RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP49YGL172W MON2P48563 1636 aaPredicted RBP12.83□□□□□ -0.36
NUP49YGL172W INO80P53115 1489 aa12.82□□□□□ -0.36
NUP49YGL172W SGS1P35187 1447 aa12.71□□□□□ -0.37
NUP49YGL172W TCB3Q03640 1545 aaKnown RBP12.58□□□□□ -0.4
NUP49YGL172W TY1B-DR4Q07793 1604 aa12.48□□□□□ -0.41
NUP49YGL172W SWR1Q05471 1514 aa12.4□□□□□ -0.42
NUP49YGL172W DRS1P32892 752 aaKnown RBP12.3□□□□□ -0.44
NUP49YGL172W DNA2P38859 1522 aa12.23□□□□□ -0.45
NUP49YGL172W HSL1P34244 1518 aa12.17□□□□□ -0.46
NUP49YGL172W SPT6P23615 1451 aaKnown RBP12.15□□□□□ -0.46
NUP49YGL172W KOG1P38873 1557 aa12.11□□□□□ -0.47
NUP49YGL172W SPA2P23201 1466 aaKnown RBP12.07□□□□□ -0.48
NUP49YGL172W MTC1P47018 478 aaKnown RBP11.98□□□□□ -0.49
NUP49YGL172W SSN2P38931 1420 aa11.93□□□□□ -0.5
NUP49YGL172W HIR3P47171 1648 aa11.93□□□□□ -0.5
NUP49YGL172W XRN1P22147 1528 aaKnown RBP11.79□□□□□ -0.52
NUP49YGL172W ECM5Q03214 1411 aa11.7□□□□□ -0.54
NUP49YGL172W BUD4P47136 1447 aa11.67□□□□□ -0.54
NUP49YGL172W THO2P53552 1597 aaKnown RBP11.66□□□□□ -0.54
NUP49YGL172W REV3P14284 1504 aa11.59□□□□□ -0.55
NUP49YGL172W RSE1Q04693 1361 aaKnown RBP11.57□□□□□ -0.56
NUP49YGL172W MDS3P53094 1487 aa11.51□□□□□ -0.57
NUP49YGL172W TAF2P23255 1407 aa11.48□□□□□ -0.57
NUP49YGL172W SIN3P22579 1536 aa11.47□□□□□ -0.57
NUP49YGL172W ATG2P53855 1592 aa11.46□□□□□ -0.58
NUP49YGL172W PEP1P32319 1579 aa11.43□□□□□ -0.58
NUP49YGL172W SSK2P53599 1579 aa11.39□□□□□ -0.59
NUP49YGL172W SKI3P17883 1432 aaKnown RBP11.37□□□□□ -0.59
NUP49YGL172W ESP1Q03018 1630 aa11.32□□□□□ -0.6
NUP49YGL172W MYO2P19524 1574 aaKnown RBP11.22□□□□□ -0.61
NUP49YGL172W BPT1P14772 1559 aa11.18□□□□□ -0.62
NUP49YGL172W YPK9Q12697 1472 aa11.16□□□□□ -0.62
NUP49YGL172W UFD4P33202 1483 aa11.11□□□□□ -0.63
NUP49YGL172W SCC2Q04002 1493 aa11.11□□□□□ -0.63
NUP49YGL172W TFA1P36100 482 aa11.05□□□□□ -0.64
NUP49YGL172W BFR2Q06631 534 aaKnown RBP11.05□□□□□ -0.64
NUP49YGL172W RPO31P04051 1460 aa11.04□□□□□ -0.64
NUP49YGL172W YCF1P39109 1515 aaKnown RBP11□□□□□ -0.65
NUP49YGL172W FAP1P53971 965 aa10.97□□□□□ -0.65
NUP49YGL172W POL1P13382 1468 aa10.96□□□□□ -0.66
NUP49YGL172W TY2B-LR1P0C2J3 1770 aa10.94□□□□□ -0.66
NUP49YGL172W TY2B-FP0CX63 1770 aa10.94□□□□□ -0.66
NUP49YGL172W TY2B-GR2P0CX64 1770 aa10.94□□□□□ -0.66
NUP49YGL172W TY2B-CP25384 1770 aa10.94□□□□□ -0.66
NUP49YGL172W TY2B-DR2Q03494 1770 aa10.94□□□□□ -0.66
NUP49YGL172W TY1B-DR1Q03855 1755 aa10.94□□□□□ -0.66
NUP49YGL172W TY2B-DR3Q07791 1770 aaKnown RBP10.94□□□□□ -0.66
NUP49YGL172W TY2B-OR1Q12113 1770 aa10.94□□□□□ -0.66
NUP49YGL172W TY2B-DR1Q12472 1770 aa10.94□□□□□ -0.66
NUP49YGL172W TY2B-OR2Q12501 1770 aa10.94□□□□□ -0.66
NUP49YGL172W RKR1Q04781 1562 aa10.94□□□□□ -0.66
NUP49YGL172W TOP2P06786 1428 aaKnown RBP10.93□□□□□ -0.66
NUP49YGL172W STU1P38198 1513 aa10.91□□□□□ -0.66
NUP49YGL172W RQC2Q12532 1038 aaKnown RBP10.9□□□□□ -0.66
NUP49YGL172W CDC25P04821 1589 aa10.87□□□□□ -0.67
NUP49YGL172W CHD1P32657 1468 aa10.87□□□□□ -0.67
NUP49YGL172W YOR1P53049 1477 aa10.84□□□□□ -0.67
NUP49YGL172W TY1B-BRQ12193 1756 aa10.83□□□□□ -0.68
NUP49YGL172W TY1B-GR3Q12316 1755 aa10.83□□□□□ -0.68
NUP49YGL172W TY1B-ORQ92393 1755 aa10.83□□□□□ -0.68
NUP49YGL172W TY2B-BQ12491 1770 aa10.82□□□□□ -0.68
NUP49YGL172W TY1B-DR3Q99231 1755 aa10.82□□□□□ -0.68
NUP49YGL172W SMC4Q12267 1418 aa10.81□□□□□ -0.68
NUP49YGL172W PAN1P32521 1480 aa10.79□□□□□ -0.68
NUP49YGL172W ESC1Q03661 1658 aaKnown RBP10.77□□□□□ -0.68
NUP49YGL172W TY1B-HO13535 1793 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-DR5P0C2I2 1755 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-DR6P0C2I3 1755 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-LR2P0C2I5 1755 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-LR3P0C2I6 1755 aaKnown RBP10.77□□□□□ -0.69
NUP49YGL172W TY1B-PR1P0C2I9 1755 aaKnown RBP10.77□□□□□ -0.69
NUP49YGL172W TY1B-PR2P0C2J0 1756 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-PR3P0C2J1 1755 aaKnown RBP10.77□□□□□ -0.69
NUP49YGL172W TY1B-JR1P47098 1755 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-ML2Q03434 1755 aaKnown RBP10.77□□□□□ -0.69
NUP49YGL172W TY1B-ER1Q03612 1755 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-ML1Q04711 1755 aaKnown RBP10.77□□□□□ -0.69
NUP49YGL172W TY1B-GR2Q12269 1755 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-OLQ12273 1755 aa10.77□□□□□ -0.69
NUP49YGL172W TY1B-PLQ12414 1755 aaKnown RBP10.77□□□□□ -0.69
NUP49YGL172W MMS22Q06164 1454 aa10.77□□□□□ -0.69
NUP49YGL172W DNF1P32660 1571 aa10.76□□□□□ -0.69
NUP49YGL172W YTA7P40340 1379 aa10.72□□□□□ -0.69
NUP49YGL172W SPP41P38904 1435 aa10.7□□□□□ -0.7
NUP49YGL172W RPA190P10964 1664 aaKnown RBP10.68□□□□□ -0.7
NUP49YGL172W MYO4P32492 1471 aa10.66□□□□□ -0.7
NUP49YGL172W TRM732Q03496 1420 aa10.66□□□□□ -0.7
NUP49YGL172W TSC11P40061 1430 aa10.62□□□□□ -0.71
NUP49YGL172W MET5P47169 1442 aa10.62□□□□□ -0.71
NUP49YGL172W VTH1P40438 1549 aa10.62□□□□□ -0.71
NUP49YGL172W VTH2P40890 1549 aa10.62□□□□□ -0.71
NUP49YGL172W TY1B-JR2P47100 1755 aaKnown RBP10.58□□□□□ -0.72
NUP49YGL172W TY1B-ER2Q03619 1755 aa10.58□□□□□ -0.72
NUP49YGL172W TY1B-MR1Q04214 1755 aa10.58□□□□□ -0.72
NUP49YGL172W TY1B-MR2Q04670 1755 aaKnown RBP10.58□□□□□ -0.72
NUP49YGL172W TY1B-LR1Q12088 1755 aaKnown RBP10.58□□□□□ -0.72
NUP49YGL172W TY1B-NL1Q12112 1755 aa10.58□□□□□ -0.72
NUP49YGL172W TY1B-GR1Q12141 1755 aa10.58□□□□□ -0.72
NUP49YGL172W TY1B-BLQ12490 1755 aa10.58□□□□□ -0.72
NUP49YGL172W NTE1Q04958 1679 aa10.54□□□□□ -0.72
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms