Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeastyeast

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SHP1P34223 YML009W-BYML009W-B 477 nt23.18■■□□□ 1.3
SHP1P34223 NSR1YGR159C 1245 nt22.71■■□□□ 1.23
SHP1P34223 NOP1YDL014W 984 nt22.6■■□□□ 1.21
SHP1P34223 YKL036CYKL036C 393 nt21.23■□□□□ 0.99
SHP1P34223 Q0297Q0297 156 nt19.97■□□□□ 0.79
SHP1P34223 MDJ1YFL016C 1536 nt19.92■□□□□ 0.78
SHP1P34223 YJL027CYJL027C 417 nt19.87■□□□□ 0.77
SHP1P34223 SRX1YKL086W 384 nt19.81■□□□□ 0.76
SHP1P34223 SCS3YGL126W 1143 nt19.56■□□□□ 0.72
SHP1P34223 YCR051WYCR051W 669 nt18.81■□□□□ 0.6
SHP1P34223 YOL085CYOL085C 342 nt18.42■□□□□ 0.54
SHP1P34223 PKP1YIL042C 1185 nt18.12■□□□□ 0.49
SHP1P34223 RPP1BYDL130W 321 nt17.92■□□□□ 0.46
SHP1P34223 DBP2YNL112W 1641 nt17.82■□□□□ 0.44
SHP1P34223 TRN1tP(UGG)A 72 nt17.75■□□□□ 0.43
SHP1P34223 SUF9tP(UGG)F 72 nt17.75■□□□□ 0.43
SHP1P34223 SUF8tP(UGG)H 72 nt17.75■□□□□ 0.43
SHP1P34223 tP(UGG)LtP(UGG)L 72 nt17.75■□□□□ 0.43
SHP1P34223 SUF7tP(UGG)M 72 nt17.75■□□□□ 0.43
SHP1P34223 tP(UGG)N1tP(UGG)N1 72 nt17.75■□□□□ 0.43
SHP1P34223 tP(UGG)N2tP(UGG)N2 72 nt17.75■□□□□ 0.43
SHP1P34223 tP(UGG)O1tP(UGG)O1 72 nt17.75■□□□□ 0.43
SHP1P34223 SUF11tP(UGG)O2 72 nt17.75■□□□□ 0.43
SHP1P34223 SCJ1YMR214W 1134 nt17.69■□□□□ 0.42
SHP1P34223 ATS1YAL020C 1002 nt17.57■□□□□ 0.4
SHP1P34223 CCC1YLR220W 969 nt17.53■□□□□ 0.4
SHP1P34223 PET122YER153C 765 nt17.12■□□□□ 0.33
SHP1P34223 SCR1SCR1 522 nt16.93■□□□□ 0.3
SHP1P34223 tP(UGG)O3tP(UGG)O3 72 nt16.89■□□□□ 0.29
SHP1P34223 YBR190WYBR190W 312 nt16.83■□□□□ 0.28
SHP1P34223 RVS167YDR388W 1449 nt16.65■□□□□ 0.26
SHP1P34223 RRN5YLR141W 1092 nt16.64■□□□□ 0.25
SHP1P34223 RTC3YHR087W 336 nt16.44■□□□□ 0.22
SHP1P34223 RSB1YOR049C 1065 nt16.36■□□□□ 0.21
SHP1P34223 YER088W-BYER088W-B 147 nt16.33■□□□□ 0.2
SHP1P34223 YDJ1YNL064C 1230 nt16.31■□□□□ 0.2
SHP1P34223 PST2YDR032C 597 nt16.24■□□□□ 0.19
SHP1P34223 SHR5YOL110W 714 nt16.23■□□□□ 0.19
SHP1P34223 GAR1YHR089C 618 nt15.9■□□□□ 0.14
SHP1P34223 YKL097CYKL097C 411 nt15.72■□□□□ 0.11
SHP1P34223 DEP1YAL013W 1218 nt15.68■□□□□ 0.1
SHP1P34223 URN1YPR152C 1398 nt15.57■□□□□ 0.08
SHP1P34223 SHU1YHL006C 453 nt15.52■□□□□ 0.08
SHP1P34223 YNL208WYNL208W 600 nt15.42■□□□□ 0.06
SHP1P34223 TIR1YER011W 765 nt15.36■□□□□ 0.05
SHP1P34223 RPN10YHR200W 807 nt15.33■□□□□ 0.04
SHP1P34223 OPI9YLR338W 858 nt15.28■□□□□ 0.04
SHP1P34223 YAL037C-BYAL037C-B 975 nt15.18■□□□□ 0.02
SHP1P34223 SSA1YAL005C 1929 nt15.16■□□□□ 0.02
SHP1P34223 YOR139CYOR139C 393 nt15.12■□□□□ 0.01
SHP1P34223 SAH1YER043C 1350 nt15.11■□□□□ 0.01
SHP1P34223 PUT4YOR348C 1884 nt15.1■□□□□ 0.01
SHP1P34223 SRB2YHR041C 633 nt15.06■□□□□ 0
SHP1P34223 ARE1YCR048W 1833 nt14.94□□□□□ -0.02
SHP1P34223 YJR018WYJR018W 363 nt14.86□□□□□ -0.03
SHP1P34223 YJR120WYJR120W 351 nt14.83□□□□□ -0.04
SHP1P34223 NPL3YDR432W 1245 nt14.8□□□□□ -0.04
SHP1P34223 PUN1YLR414C 792 nt14.79□□□□□ -0.04
SHP1P34223 WWM1YFL010C 636 nt14.77□□□□□ -0.05
SHP1P34223 MNP1YGL068W 585 nt14.77□□□□□ -0.05
SHP1P34223 HOM6YJR139C 1080 nt14.76□□□□□ -0.05
SHP1P34223 YGR021WYGR021W 873 nt14.72□□□□□ -0.05
SHP1P34223 YHR049C-AYHR049C-A 297 nt14.69□□□□□ -0.06
SHP1P34223 POA1YBR022W 534 nt14.61□□□□□ -0.07
SHP1P34223 SSA3YBL075C 1950 nt14.61□□□□□ -0.07
SHP1P34223 RPP2BYDR382W 333 nt14.59□□□□□ -0.07
SHP1P34223 PTC2YER089C 1395 nt14.59□□□□□ -0.07
SHP1P34223 YOL037CYOL037C 354 nt14.58□□□□□ -0.08
SHP1P34223 RKM5YLR137W 1104 nt14.53□□□□□ -0.08
SHP1P34223 tM(CAU)CtM(CAU)C 72 nt14.49□□□□□ -0.09
SHP1P34223 IMT4tM(CAU)E 72 nt14.49□□□□□ -0.09
SHP1P34223 IMT3tM(CAU)J3 72 nt14.49□□□□□ -0.09
SHP1P34223 IMT1tM(CAU)O1 72 nt14.49□□□□□ -0.09
SHP1P34223 IMT2tM(CAU)P 72 nt14.49□□□□□ -0.09
SHP1P34223 YFL021C-AYFL021C-A 855 nt14.48□□□□□ -0.09
SHP1P34223 BDH2YAL061W 1254 nt14.43□□□□□ -0.1
SHP1P34223 BUD23YCR047C 828 nt14.34□□□□□ -0.11
SHP1P34223 NAB2YGL122C 1578 nt14.33□□□□□ -0.12
SHP1P34223 LSM3YLR438C-A 270 nt14.28□□□□□ -0.12
SHP1P34223 YLR281CYLR281C 468 nt14.26□□□□□ -0.13
SHP1P34223 INM2YDR287W 879 nt14.25□□□□□ -0.13
SHP1P34223 FIS1YIL065C 468 nt14.24□□□□□ -0.13
SHP1P34223 BSC6YOL137W 1494 nt14.23□□□□□ -0.13
SHP1P34223 DAL1YIR027C 1383 nt14.22□□□□□ -0.13
SHP1P34223 PUS2YGL063W 1113 nt14.21□□□□□ -0.13
SHP1P34223 YBL100CYBL100C 315 nt14.21□□□□□ -0.13
SHP1P34223 FPR4YLR449W 1179 nt14.16□□□□□ -0.14
SHP1P34223 WHI5YOR083W 888 nt14.15□□□□□ -0.14
SHP1P34223 PHO4YFR034C 939 nt14.11□□□□□ -0.15
SHP1P34223 FUN26YAL022C 1554 nt14.07□□□□□ -0.16
SHP1P34223 TRM9YML014W 840 nt14.05□□□□□ -0.16
SHP1P34223 MOT3YMR070W 1473 nt14.05□□□□□ -0.16
SHP1P34223 YPR011CYPR011C 981 nt13.98□□□□□ -0.17
SHP1P34223 CCT6YDR188W 1641 nt13.95□□□□□ -0.18
SHP1P34223 YLR236CYLR236C 324 nt13.91□□□□□ -0.18
SHP1P34223 YLR154C-GYLR154C-G 150 nt13.88□□□□□ -0.19
SHP1P34223 DSK2YMR276W 1122 nt13.88□□□□□ -0.19
SHP1P34223 FMP45YDL222C 930 nt13.86□□□□□ -0.19
SHP1P34223 IMP2'YIL154C 1041 nt13.76□□□□□ -0.21
SHP1P34223 YCH1YGR203W 447 nt13.73□□□□□ -0.21
Retrieved 100 of 7,029 protein–RNA pairs in 13.5 ms