RNA–Protein interactions for RNA: YKR053C

YSR3, Transcript of Dihydrosphingosine 1-phosphate phosphatase, yeast

Gene YSR3, Length 1,215 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YSR3	YKR053C	UBP9	P39967	754 aa		11.82	□□□□□ -0.52
YSR3	YKR053C	PAH1	P32567	862 aa		11.81	□□□□□ -0.52
YSR3	YKR053C	RER2	P35196	286 aa		11.81	□□□□□ -0.52
YSR3	YKR053C	YKR018C	P36114	725 aa		11.81	□□□□□ -0.52
YSR3	YKR053C	BRN1	P38170	754 aa		11.81	□□□□□ -0.52
YSR3	YKR053C	FOL1	P53848	824 aa		11.81	□□□□□ -0.52
YSR3	YKR053C	ALD6	P54115	500 aa	Known RBP	11.81	□□□□□ -0.52
YSR3	YKR053C	ULP1	Q02724	621 aa		11.81	□□□□□ -0.52
YSR3	YKR053C	CLF1	Q12309	687 aa	Predicted RBP	11.81	□□□□□ -0.52
YSR3	YKR053C	ACE2	P21192	770 aa		11.8	□□□□□ -0.52
YSR3	YKR053C	MXR1	P40029	184 aa		11.8	□□□□□ -0.52
YSR3	YKR053C	GCR2	Q01722	534 aa		11.8	□□□□□ -0.52
YSR3	YKR053C	RPT6	Q01939	405 aa	Known RBP	11.8	□□□□□ -0.52
YSR3	YKR053C	VPS30	Q02948	557 aa		11.8	□□□□□ -0.52
YSR3	YKR053C	ICL2	Q12031	575 aa		11.8	□□□□□ -0.52
YSR3	YKR053C	RAD18	P10862	487 aa		11.79	□□□□□ -0.52
YSR3	YKR053C	MAC1	P35192	417 aa		11.79	□□□□□ -0.52
YSR3	YKR053C	NUC1	P08466	329 aa		11.78	□□□□□ -0.52
YSR3	YKR053C	RPL8B	P29453	256 aa	Known RBP	11.78	□□□□□ -0.52
YSR3	YKR053C	PAM1	P37304	830 aa	Known RBP	11.78	□□□□□ -0.52
YSR3	YKR053C	PHO88	P38264	188 aa	Predicted RBP	11.78	□□□□□ -0.52
YSR3	YKR053C	VPS45	P38932	577 aa		11.78	□□□□□ -0.52
YSR3	YKR053C	HDA1	P53973	706 aa		11.78	□□□□□ -0.52
YSR3	YKR053C	MYO5	Q04439	1219 aa	Known RBP	11.78	□□□□□ -0.52
YSR3	YKR053C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.78	□□□□□ -0.52	not detected
YSR3	YKR053C	CDC19	P00549	500 aa	Known RBP	11.77	□□□□□ -0.53
YSR3	YKR053C	MAK31	P23059	88 aa		11.77	□□□□□ -0.53
YSR3	YKR053C	PEP3	P27801	918 aa		11.77	□□□□□ -0.53
YSR3	YKR053C	PTK2	P47116	818 aa	Known RBP	11.77	□□□□□ -0.53
YSR3	YKR053C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	11.76	□□□□□ -0.53	not detected
YSR3	YKR053C	IMP2'	P32351	346 aa		11.76	□□□□□ -0.53
YSR3	YKR053C	UTR4	P32626	227 aa		11.76	□□□□□ -0.53
YSR3	YKR053C	CIC1	P38779	376 aa	Known RBP	11.76	□□□□□ -0.53
YSR3	YKR053C	ALG2	P43636	503 aa		11.76	□□□□□ -0.53
YSR3	YKR053C	YGR125W	P53273	1036 aa		11.76	□□□□□ -0.53
YSR3	YKR053C	TFC6	Q06339	672 aa		11.76	□□□□□ -0.53
YSR3	YKR053C	MET7	Q08645	548 aa		11.76	□□□□□ -0.53
YSR3	YKR053C	RGT1	P32862	1170 aa		11.75	□□□□□ -0.53
YSR3	YKR053C	HXT17	P53631	564 aa		11.75	□□□□□ -0.53
YSR3	YKR053C	CSC1	Q06538	782 aa		11.75	□□□□□ -0.53
YSR3	YKR053C	TGL1	P34163	548 aa		11.74	□□□□□ -0.53
YSR3	YKR053C	VPS62	P53285	467 aa		11.74	□□□□□ -0.53
YSR3	YKR053C	DUS4	Q06063	367 aa		11.74	□□□□□ -0.53
YSR3	YKR053C	EST2	Q06163	884 aa		11.74	□□□□□ -0.53
YSR3	YKR053C	SEC20	P28791	383 aa		11.73	□□□□□ -0.53
YSR3	YKR053C	DLD1	P32891	587 aa		11.73	□□□□□ -0.53
YSR3	YKR053C	TOM71	P38825	639 aa	Known RBP	11.73	□□□□□ -0.53
YSR3	YKR053C	HXT13	P39924	564 aa		11.73	□□□□□ -0.53
YSR3	YKR053C	CSM2	P40465	213 aa		11.73	□□□□□ -0.53
YSR3	YKR053C	SPO22	P40511	975 aa		11.73	□□□□□ -0.53
YSR3	YKR053C	LSB1	P53281	241 aa		11.73	□□□□□ -0.53
YSR3	YKR053C	SPH1	Q06160	661 aa		11.73	□□□□□ -0.53
YSR3	YKR053C	UTP4	Q06679	776 aa	Known RBP	11.73	□□□□□ -0.53
YSR3	YKR053C	SRP54	P20424	541 aa	Known RBP	11.72	□□□□□ -0.53
YSR3	YKR053C	TMA64	Q04600	565 aa	Known RBP	11.72	□□□□□ -0.53
YSR3	YKR053C	PGA3	Q12746	312 aa	Known RBP	11.72	□□□□□ -0.53
YSR3	YKR053C	SAM1	P10659	382 aa	Known RBP	11.71	□□□□□ -0.53
YSR3	YKR053C	SRP40	P32583	406 aa	Predicted RBP	11.71	□□□□□ -0.53
YSR3	YKR053C	AIM21	P40563	679 aa		11.71	□□□□□ -0.53
YSR3	YKR053C	PRY3	P47033	881 aa		11.71	□□□□□ -0.53
YSR3	YKR053C	ESF1	Q06344	628 aa	Known RBP	11.71	□□□□□ -0.53
YSR3	YKR053C	LDH1	P38139	375 aa		11.7	□□□□□ -0.54
YSR3	YKR053C	VPS29	P38759	282 aa		11.7	□□□□□ -0.54
YSR3	YKR053C	MDM1	Q01846	1127 aa		11.7	□□□□□ -0.54
YSR3	YKR053C	GUD1	Q07729	489 aa		11.7	□□□□□ -0.54
YSR3	YKR053C	YOR131C	Q12486	218 aa		11.7	□□□□□ -0.54
YSR3	YKR053C	YOR111W	Q99210	232 aa		11.7	□□□□□ -0.54
YSR3	YKR053C	SIS2	P36024	562 aa		11.69	□□□□□ -0.54
YSR3	YKR053C	MAL31	P38156	614 aa		11.69	□□□□□ -0.54
YSR3	YKR053C	BUL2	Q03758	920 aa	Known RBP	11.69	□□□□□ -0.54
YSR3	YKR053C	SUE1	Q06524	206 aa		11.69	□□□□□ -0.54
YSR3	YKR053C	DSE3	Q08729	430 aa		11.69	□□□□□ -0.54
YSR3	YKR053C	SUT2	Q12286	268 aa		11.69	□□□□□ -0.54
YSR3	YKR053C	RNR3	P21672	869 aa	Known RBP	11.68	□□□□□ -0.54
YSR3	YKR053C	MCR1	P36060	302 aa	Known RBP	11.68	□□□□□ -0.54
YSR3	YKR053C	DUS3	Q06053	668 aa	Known RBP	11.68	□□□□□ -0.54
YSR3	YKR053C	SHP1	P34223	423 aa		11.67	□□□□□ -0.54
YSR3	YKR053C	AIM9	P40053	627 aa	Known RBP	11.67	□□□□□ -0.54
YSR3	YKR053C	YJR107W	P47145	328 aa		11.67	□□□□□ -0.54
YSR3	YKR053C	BRE5	P53741	515 aa	Known RBP	11.67	□□□□□ -0.54
YSR3	YKR053C	ECM23	Q02710	187 aa		11.67	□□□□□ -0.54
YSR3	YKR053C	MDM20	Q12387	796 aa	Known RBP	11.67	□□□□□ -0.54
YSR3	YKR053C	TPM2	P40414	161 aa		11.66	□□□□□ -0.54
YSR3	YKR053C	FMS1	P50264	508 aa		11.66	□□□□□ -0.54
YSR3	YKR053C	ISW2	Q08773	1120 aa		11.66	□□□□□ -0.54
YSR3	YKR053C	TY1B-A	O13527	1196 aa	Known RBP	11.65	□□□□□ -0.54
YSR3	YKR053C	RPL8A	P17076	256 aa	Known RBP	11.65	□□□□□ -0.54
YSR3	YKR053C	AFG3	P39925	761 aa		11.65	□□□□□ -0.54
YSR3	YKR053C	VPS53	P47061	822 aa		11.65	□□□□□ -0.54
YSR3	YKR053C	LIF1	P53150	421 aa		11.65	□□□□□ -0.54
YSR3	YKR053C	SLD5	Q03406	294 aa		11.65	□□□□□ -0.54
YSR3	YKR053C	ECM30	Q06673	1274 aa		11.65	□□□□□ -0.54
YSR3	YKR053C	VIP1	Q06685	1146 aa	Known RBP	11.65	□□□□□ -0.54
YSR3	YKR053C	ERP3	Q12403	225 aa		11.65	□□□□□ -0.54
YSR3	YKR053C	TKL1	P23254	680 aa	Known RBP	11.64	□□□□□ -0.55
YSR3	YKR053C	MCM4	P30665	933 aa	Known RBP	11.64	□□□□□ -0.55
YSR3	YKR053C	BCS1	P32839	456 aa		11.64	□□□□□ -0.55
YSR3	YKR053C	SEC8	P32855	1065 aa		11.64	□□□□□ -0.55
YSR3	YKR053C	KSP1	P38691	1029 aa	Known RBP	11.64	□□□□□ -0.55
YSR3	YKR053C	ISA1	Q07821	250 aa	Predicted RBP	11.64	□□□□□ -0.55

Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms