RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBA4	YHR111W	PES4	P39684	611 aa		11.9	□□□□□ -0.5
UBA4	YHR111W	PIB1	Q06651	286 aa		11.9	□□□□□ -0.5
UBA4	YHR111W	PKC1	P24583	1151 aa		11.89	□□□□□ -0.51
UBA4	YHR111W	EUG1	P32474	517 aa		11.89	□□□□□ -0.51
UBA4	YHR111W	RER2	P35196	286 aa		11.89	□□□□□ -0.51
UBA4	YHR111W	PAM1	P37304	830 aa	Known RBP	11.89	□□□□□ -0.51
UBA4	YHR111W	UBP9	P39967	754 aa		11.89	□□□□□ -0.51
UBA4	YHR111W	PSF2	P40359	213 aa		11.89	□□□□□ -0.51
UBA4	YHR111W	FOL1	P53848	824 aa		11.89	□□□□□ -0.51
UBA4	YHR111W	HDA1	P53973	706 aa		11.89	□□□□□ -0.51
UBA4	YHR111W	TPM1	P17536	199 aa	Known RBP	11.88	□□□□□ -0.51
UBA4	YHR111W	GCR2	Q01722	534 aa		11.88	□□□□□ -0.51
UBA4	YHR111W	GPB2	P39717	880 aa		11.87	□□□□□ -0.51
UBA4	YHR111W	PTK2	P47116	818 aa	Known RBP	11.87	□□□□□ -0.51
UBA4	YHR111W	ULP1	Q02724	621 aa		11.87	□□□□□ -0.51
UBA4	YHR111W	VPS30	Q02948	557 aa		11.87	□□□□□ -0.51
UBA4	YHR111W	RAD18	P10862	487 aa		11.86	□□□□□ -0.51
UBA4	YHR111W	IMP2'	P32351	346 aa		11.86	□□□□□ -0.51
UBA4	YHR111W	PAH1	P32567	862 aa		11.86	□□□□□ -0.51
UBA4	YHR111W	CIC1	P38779	376 aa	Known RBP	11.86	□□□□□ -0.51
UBA4	YHR111W	HXT17	P53631	564 aa		11.86	□□□□□ -0.51
UBA4	YHR111W	YAF9	P53930	226 aa		11.86	□□□□□ -0.51
UBA4	YHR111W	ALD6	P54115	500 aa	Known RBP	11.86	□□□□□ -0.51
UBA4	YHR111W	RPT6	Q01939	405 aa	Known RBP	11.86	□□□□□ -0.51
UBA4	YHR111W	PGA3	Q12746	312 aa	Known RBP	11.86	□□□□□ -0.51
UBA4	YHR111W	NUC1	P08466	329 aa		11.86	□□□□□ -0.51
UBA4	YHR111W	RPL8B	P29453	256 aa	Known RBP	11.86	□□□□□ -0.51
UBA4	YHR111W	VPS45	P38932	577 aa		11.86	□□□□□ -0.51
UBA4	YHR111W	MAK31	P23059	88 aa		11.85	□□□□□ -0.51
UBA4	YHR111W	AVT3	P36062	692 aa		11.85	□□□□□ -0.51
UBA4	YHR111W	YKR018C	P36114	725 aa		11.85	□□□□□ -0.51
UBA4	YHR111W	PHO88	P38264	188 aa	Predicted RBP	11.85	□□□□□ -0.51
UBA4	YHR111W	HXT13	P39924	564 aa		11.85	□□□□□ -0.51
UBA4	YHR111W	MYO5	Q04439	1219 aa	Known RBP	11.85	□□□□□ -0.51
UBA4	YHR111W	PEP3	P27801	918 aa		11.84	□□□□□ -0.51
UBA4	YHR111W	UTR4	P32626	227 aa		11.84	□□□□□ -0.51
UBA4	YHR111W	MAC1	P35192	417 aa		11.84	□□□□□ -0.51
UBA4	YHR111W	TFC6	Q06339	672 aa		11.84	□□□□□ -0.51
UBA4	YHR111W	CLF1	Q12309	687 aa	Predicted RBP	11.84	□□□□□ -0.51
UBA4	YHR111W	DLD1	P32891	587 aa		11.83	□□□□□ -0.52
UBA4	YHR111W	MXR1	P40029	184 aa		11.83	□□□□□ -0.52
UBA4	YHR111W	CSM2	P40465	213 aa		11.83	□□□□□ -0.52
UBA4	YHR111W	DUS4	Q06063	367 aa		11.83	□□□□□ -0.52
UBA4	YHR111W	ICL2	Q12031	575 aa		11.83	□□□□□ -0.52
UBA4	YHR111W	CDC19	P00549	500 aa	Known RBP	11.82	□□□□□ -0.52
UBA4	YHR111W	SAM1	P10659	382 aa	Known RBP	11.82	□□□□□ -0.52
UBA4	YHR111W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	11.82	□□□□□ -0.52	RIP-Chip
UBA4	YHR111W	EST2	Q06163	884 aa		11.82	□□□□□ -0.52
UBA4	YHR111W	ESF1	Q06344	628 aa	Known RBP	11.82	□□□□□ -0.52
UBA4	YHR111W	MET7	Q08645	548 aa		11.82	□□□□□ -0.52
UBA4	YHR111W	TGL1	P34163	548 aa		11.81	□□□□□ -0.52
UBA4	YHR111W	YGR125W	P53273	1036 aa		11.81	□□□□□ -0.52
UBA4	YHR111W	TMA64	Q04600	565 aa	Known RBP	11.81	□□□□□ -0.52
UBA4	YHR111W	SUE1	Q06524	206 aa		11.81	□□□□□ -0.52
UBA4	YHR111W	CSC1	Q06538	782 aa		11.81	□□□□□ -0.52
UBA4	YHR111W	UTP4	Q06679	776 aa	Known RBP	11.81	□□□□□ -0.52
UBA4	YHR111W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.81	□□□□□ -0.52	not detected
UBA4	YHR111W	SRP54	P20424	541 aa	Known RBP	11.8	□□□□□ -0.52
UBA4	YHR111W	ALG2	P43636	503 aa		11.8	□□□□□ -0.52
UBA4	YHR111W	VPS62	P53285	467 aa		11.8	□□□□□ -0.52
UBA4	YHR111W	MRPL32	P25348	183 aa		11.79	□□□□□ -0.52
UBA4	YHR111W	SRP40	P32583	406 aa	Predicted RBP	11.79	□□□□□ -0.52
UBA4	YHR111W	RGT1	P32862	1170 aa		11.79	□□□□□ -0.52
UBA4	YHR111W	BUL2	Q03758	920 aa	Known RBP	11.79	□□□□□ -0.52
UBA4	YHR111W	SPH1	Q06160	661 aa		11.79	□□□□□ -0.52
UBA4	YHR111W	TOM71	P38825	639 aa	Known RBP	11.78	□□□□□ -0.52
UBA4	YHR111W	LSB1	P53281	241 aa		11.78	□□□□□ -0.52
UBA4	YHR111W	MDM1	Q01846	1127 aa		11.78	□□□□□ -0.52
UBA4	YHR111W	SHP1	P34223	423 aa		11.77	□□□□□ -0.53
UBA4	YHR111W	SPO22	P40511	975 aa		11.77	□□□□□ -0.53
UBA4	YHR111W	BRE5	P53741	515 aa	Known RBP	11.77	□□□□□ -0.53
UBA4	YHR111W	YOR131C	Q12486	218 aa		11.77	□□□□□ -0.53
UBA4	YHR111W	YOR111W	Q99210	232 aa		11.77	□□□□□ -0.53
UBA4	YHR111W	LDH1	P38139	375 aa		11.76	□□□□□ -0.53
UBA4	YHR111W	DUS3	Q06053	668 aa	Known RBP	11.76	□□□□□ -0.53
UBA4	YHR111W	DSE3	Q08729	430 aa		11.76	□□□□□ -0.53
UBA4	YHR111W	SUT2	Q12286	268 aa		11.76	□□□□□ -0.53
UBA4	YHR111W	SEC20	P28791	383 aa		11.75	□□□□□ -0.53
UBA4	YHR111W	MAL31	P38156	614 aa		11.75	□□□□□ -0.53
UBA4	YHR111W	VPS29	P38759	282 aa		11.75	□□□□□ -0.53
UBA4	YHR111W	NDT80	P38830	627 aa		11.75	□□□□□ -0.53
UBA4	YHR111W	AIM9	P40053	627 aa	Known RBP	11.75	□□□□□ -0.53
UBA4	YHR111W	KRI1	P42846	591 aa	Known RBP	11.75	□□□□□ -0.53
UBA4	YHR111W	SLD5	Q03406	294 aa		11.75	□□□□□ -0.53
UBA4	YHR111W	RNR3	P21672	869 aa	Known RBP	11.74	□□□□□ -0.53
UBA4	YHR111W	SIS2	P36024	562 aa		11.74	□□□□□ -0.53
UBA4	YHR111W	MCR1	P36060	302 aa	Known RBP	11.74	□□□□□ -0.53
UBA4	YHR111W	ECM23	Q02710	187 aa		11.74	□□□□□ -0.53
UBA4	YHR111W	GUD1	Q07729	489 aa		11.74	□□□□□ -0.53
UBA4	YHR111W	ERP3	Q12403	225 aa		11.74	□□□□□ -0.53
UBA4	YHR111W	VID28	P40547	921 aa		11.73	□□□□□ -0.53
UBA4	YHR111W	AIM21	P40563	679 aa		11.73	□□□□□ -0.53
UBA4	YHR111W	YJR107W	P47145	328 aa		11.73	□□□□□ -0.53
UBA4	YHR111W	FMS1	P50264	508 aa		11.73	□□□□□ -0.53
UBA4	YHR111W	MSC6	Q08818	692 aa	Known RBP	11.73	□□□□□ -0.53
UBA4	YHR111W	RKM4	Q12504	494 aa		11.73	□□□□□ -0.53
UBA4	YHR111W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	11.72	□□□□□ -0.53	not detected
UBA4	YHR111W	AKR1	P39010	764 aa		11.72	□□□□□ -0.53
UBA4	YHR111W	TPM2	P40414	161 aa		11.72	□□□□□ -0.53
UBA4	YHR111W	VIP1	Q06685	1146 aa	Known RBP	11.72	□□□□□ -0.53

Retrieved 100 of 5,963 RNA–protein pairs in 55.9 ms