RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W MON2P48563 1636 aaPredicted RBP20.4■□□□□ 0.86
UBA4YHR111W INO80P53115 1489 aa20.37■□□□□ 0.85
UBA4YHR111W TCB3Q03640 1545 aaKnown RBP19.7■□□□□ 0.74
UBA4YHR111W SGS1P35187 1447 aa19.67■□□□□ 0.74
UBA4YHR111W SWR1Q05471 1514 aa19.59■□□□□ 0.73
UBA4YHR111W TY1B-DR4Q07793 1604 aa19.58■□□□□ 0.72
UBA4YHR111W DNA2P38859 1522 aa19.43■□□□□ 0.7
UBA4YHR111W KOG1P38873 1557 aa19.19■□□□□ 0.66
UBA4YHR111W HSL1P34244 1518 aa18.99■□□□□ 0.63
UBA4YHR111W SPT6P23615 1451 aaKnown RBP18.96■□□□□ 0.63
UBA4YHR111W SPA2P23201 1466 aaKnown RBP18.81■□□□□ 0.6
UBA4YHR111W HIR3P47171 1648 aa18.6■□□□□ 0.57
UBA4YHR111W RSE1Q04693 1361 aaKnown RBP18.5■□□□□ 0.55
UBA4YHR111W ECM5Q03214 1411 aa18.4■□□□□ 0.54
UBA4YHR111W XRN1P22147 1528 aaKnown RBP18.33■□□□□ 0.52
UBA4YHR111W THO2P53552 1597 aaKnown RBP18.31■□□□□ 0.52
UBA4YHR111W BUD4P47136 1447 aa18.31■□□□□ 0.52
UBA4YHR111W SSN2P38931 1420 aa18.3■□□□□ 0.52
UBA4YHR111W MDS3P53094 1487 aa18.09■□□□□ 0.49
UBA4YHR111W REV3P14284 1504 aa18.01■□□□□ 0.47
UBA4YHR111W PEP1P32319 1579 aa17.96■□□□□ 0.46
UBA4YHR111W ATG2P53855 1592 aa17.92■□□□□ 0.46
UBA4YHR111W SIN3P22579 1536 aa17.81■□□□□ 0.44
UBA4YHR111W TAF2P23255 1407 aa17.8■□□□□ 0.44
UBA4YHR111W MTC1P47018 478 aaKnown RBP17.75■□□□□ 0.43
UBA4YHR111W DRS1P32892 752 aaKnown RBP17.71■□□□□ 0.42
UBA4YHR111W SKI3P17883 1432 aaKnown RBP17.7■□□□□ 0.42
UBA4YHR111W SSK2P53599 1579 aa17.68■□□□□ 0.42
UBA4YHR111W BPT1P14772 1559 aa17.59■□□□□ 0.41
UBA4YHR111W ESP1Q03018 1630 aa17.56■□□□□ 0.4
UBA4YHR111W MYO2P19524 1574 aaKnown RBP17.36■□□□□ 0.37
UBA4YHR111W YPK9Q12697 1472 aa17.36■□□□□ 0.37
UBA4YHR111W UFD4P33202 1483 aa17.35■□□□□ 0.37
UBA4YHR111W SCC2Q04002 1493 aa17.31■□□□□ 0.36
UBA4YHR111W YCF1P39109 1515 aaKnown RBP17.3■□□□□ 0.36
UBA4YHR111W RPO31P04051 1460 aa17.21■□□□□ 0.35
UBA4YHR111W TY2B-LR1P0C2J3 1770 aa17.05■□□□□ 0.32
UBA4YHR111W TY2B-FP0CX63 1770 aa17.05■□□□□ 0.32
UBA4YHR111W TY2B-GR2P0CX64 1770 aa17.05■□□□□ 0.32
UBA4YHR111W TY2B-CP25384 1770 aa17.05■□□□□ 0.32
UBA4YHR111W TY2B-DR2Q03494 1770 aa17.05■□□□□ 0.32
UBA4YHR111W TY1B-DR1Q03855 1755 aa17.05■□□□□ 0.32
UBA4YHR111W TY2B-DR3Q07791 1770 aaKnown RBP17.05■□□□□ 0.32
UBA4YHR111W TY2B-OR1Q12113 1770 aa17.05■□□□□ 0.32
UBA4YHR111W TY2B-DR1Q12472 1770 aa17.05■□□□□ 0.32
UBA4YHR111W TY2B-OR2Q12501 1770 aa17.05■□□□□ 0.32
UBA4YHR111W CHD1P32657 1468 aa17.02■□□□□ 0.31
UBA4YHR111W CDC25P04821 1589 aa17.01■□□□□ 0.31
UBA4YHR111W TOP2P06786 1428 aaKnown RBP16.98■□□□□ 0.31
UBA4YHR111W RQC2Q12532 1038 aaKnown RBP16.95■□□□□ 0.3
UBA4YHR111W TY1B-BRQ12193 1756 aa16.93■□□□□ 0.3
UBA4YHR111W TY1B-GR3Q12316 1755 aa16.93■□□□□ 0.3
UBA4YHR111W TY1B-ORQ92393 1755 aa16.93■□□□□ 0.3
UBA4YHR111W POL1P13382 1468 aa16.93■□□□□ 0.3
UBA4YHR111W RKR1Q04781 1562 aa16.92■□□□□ 0.3
UBA4YHR111W DNF1P32660 1571 aa16.88■□□□□ 0.29
UBA4YHR111W PAN1P32521 1480 aa16.88■□□□□ 0.29
UBA4YHR111W ESC1Q03661 1658 aaKnown RBP16.88■□□□□ 0.29
UBA4YHR111W TY2B-BQ12491 1770 aa16.85■□□□□ 0.29
UBA4YHR111W TY1B-DR3Q99231 1755 aa16.84■□□□□ 0.29
UBA4YHR111W TY1B-HO13535 1793 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-DR5P0C2I2 1755 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-DR6P0C2I3 1755 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-LR2P0C2I5 1755 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-LR3P0C2I6 1755 aaKnown RBP16.8■□□□□ 0.28
UBA4YHR111W TY1B-PR1P0C2I9 1755 aaKnown RBP16.8■□□□□ 0.28
UBA4YHR111W TY1B-PR2P0C2J0 1756 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-PR3P0C2J1 1755 aaKnown RBP16.8■□□□□ 0.28
UBA4YHR111W TY1B-JR1P47098 1755 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-ML2Q03434 1755 aaKnown RBP16.8■□□□□ 0.28
UBA4YHR111W TY1B-ER1Q03612 1755 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-ML1Q04711 1755 aaKnown RBP16.8■□□□□ 0.28
UBA4YHR111W TY1B-GR2Q12269 1755 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-OLQ12273 1755 aa16.8■□□□□ 0.28
UBA4YHR111W TY1B-PLQ12414 1755 aaKnown RBP16.8■□□□□ 0.28
UBA4YHR111W STU1P38198 1513 aa16.8■□□□□ 0.28
UBA4YHR111W MET5P47169 1442 aa16.78■□□□□ 0.28
UBA4YHR111W MMS22Q06164 1454 aa16.78■□□□□ 0.28
UBA4YHR111W YOR1P53049 1477 aa16.77■□□□□ 0.27
UBA4YHR111W SMC4Q12267 1418 aa16.75■□□□□ 0.27
UBA4YHR111W RPA190P10964 1664 aaKnown RBP16.72■□□□□ 0.27
UBA4YHR111W TRM732Q03496 1420 aa16.63■□□□□ 0.25
UBA4YHR111W SPP41P38904 1435 aa16.63■□□□□ 0.25
UBA4YHR111W LTE1P07866 1435 aa16.55■□□□□ 0.24
UBA4YHR111W TSC11P40061 1430 aa16.5■□□□□ 0.23
UBA4YHR111W VTH1P40438 1549 aa16.48■□□□□ 0.23
UBA4YHR111W VTH2P40890 1549 aa16.48■□□□□ 0.23
UBA4YHR111W TY1B-JR2P47100 1755 aaKnown RBP16.48■□□□□ 0.23
UBA4YHR111W TY1B-ER2Q03619 1755 aa16.48■□□□□ 0.23
UBA4YHR111W TY1B-MR1Q04214 1755 aa16.48■□□□□ 0.23
UBA4YHR111W TY1B-MR2Q04670 1755 aaKnown RBP16.48■□□□□ 0.23
UBA4YHR111W TY1B-LR1Q12088 1755 aaKnown RBP16.48■□□□□ 0.23
UBA4YHR111W TY1B-NL1Q12112 1755 aa16.48■□□□□ 0.23
UBA4YHR111W TY1B-GR1Q12141 1755 aa16.48■□□□□ 0.23
UBA4YHR111W TY1B-BLQ12490 1755 aa16.48■□□□□ 0.23
UBA4YHR111W YTA7P40340 1379 aa16.47■□□□□ 0.23
UBA4YHR111W NUP159P40477 1460 aa16.45■□□□□ 0.22
UBA4YHR111W MYO4P32492 1471 aa16.43■□□□□ 0.22
UBA4YHR111W NTE1Q04958 1679 aa16.41■□□□□ 0.22
UBA4YHR111W YRF1-1P0CX20 1796 aa16.4■□□□□ 0.22
Retrieved 100 of 5,963 RNA–protein pairs in 6.1 ms