RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C VHS2P40463 436 aa4.29□□□□□ -1.72
NPL4YBR170C SNG1P46950 547 aa4.29□□□□□ -1.72
NPL4YBR170C SHE4P51534 789 aa4.29□□□□□ -1.72
NPL4YBR170C PDR16P53860 351 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C EAF7P53911 425 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C PRO2P54885 456 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C SNU56Q03782 492 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C DIS3Q08162 1001 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C MTR10Q99189 972 aa4.29□□□□□ -1.72
NPL4YBR170C RPN13O13563 156 aa4.29□□□□□ -1.72
NPL4YBR170C SNF3P10870 884 aa4.29□□□□□ -1.72
NPL4YBR170C SGV1P23293 657 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C MRPL4P36517 319 aa4.29□□□□□ -1.72
NPL4YBR170C TIF4631P39935 952 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C YEL020CP39994 560 aa4.29□□□□□ -1.72
NPL4YBR170C PCL7P40186 285 aa4.29□□□□□ -1.72
NPL4YBR170C YIL060WP40519 144 aa4.29□□□□□ -1.72
NPL4YBR170C RPN9Q04062 393 aaKnown RBP4.29□□□□□ -1.72
NPL4YBR170C SPH1Q06160 661 aa4.29□□□□□ -1.72
NPL4YBR170C YOR365CQ08844 703 aa4.29□□□□□ -1.72
NPL4YBR170C RKM1Q08961 583 aaPredicted RBP4.29□□□□□ -1.72
NPL4YBR170C UBX3Q12229 455 aa4.29□□□□□ -1.72
NPL4YBR170C RRD2Q12461 358 aa4.29□□□□□ -1.72
NPL4YBR170C TFB5Q3E7C1 72 aaPredicted RBP4.29□□□□□ -1.72
NPL4YBR170C KRE2P27809 442 aa4.28□□□□□ -1.72
NPL4YBR170C YKL023WP36103 277 aaKnown RBP4.28□□□□□ -1.72
NPL4YBR170C ASC1P38011 319 aaKnown RBP4.28□□□□□ -1.72
NPL4YBR170C VHC1P38329 1120 aa4.28□□□□□ -1.72
NPL4YBR170C EPL1P43572 832 aa4.28□□□□□ -1.72
NPL4YBR170C DUG3P53871 357 aa4.28□□□□□ -1.72
NPL4YBR170C OCA2P53949 197 aa4.28□□□□□ -1.72
NPL4YBR170C MGR3Q04472 501 aa4.28□□□□□ -1.72
NPL4YBR170C YDR061WQ12298 539 aa4.28□□□□□ -1.72
NPL4YBR170C TY1B-AO13527 1196 aaKnown RBP4.27□□□□□ -1.73
NPL4YBR170C CAR1P00812 333 aaKnown RBP4.27□□□□□ -1.73
NPL4YBR170C RAD52P06778 471 aaKnown RBP4.27□□□□□ -1.73
NPL4YBR170C ATP10P18496 279 aa4.27□□□□□ -1.73
NPL4YBR170C BEM1P29366 551 aa4.27□□□□□ -1.73
NPL4YBR170C BNA4P38169 460 aa4.27□□□□□ -1.73
NPL4YBR170C APD1P38281 316 aa4.27□□□□□ -1.73
NPL4YBR170C OSW5P40219 148 aa4.27□□□□□ -1.73
NPL4YBR170C RPS0BP46654 252 aaKnown RBP4.27□□□□□ -1.73
NPL4YBR170C CUE3P53137 624 aaKnown RBP4.27□□□□□ -1.73
NPL4YBR170C RMD9P53140 646 aaKnown RBP4.27□□□□□ -1.73
NPL4YBR170C ZPR1P53303 486 aaKnown RBP4.27□□□□□ -1.73
NPL4YBR170C MDM30Q05930 598 aa4.27□□□□□ -1.73
NPL4YBR170C BSP1Q06604 576 aa4.27□□□□□ -1.73
NPL4YBR170C HER1Q12276 1246 aa4.27□□□□□ -1.73
NPL4YBR170C YLR111WQ12528 110 aa4.27□□□□□ -1.73
NPL4YBR170C FAA1P30624 700 aaKnown RBP4.26□□□□□ -1.73
NPL4YBR170C SIN4P32259 974 aa4.26□□□□□ -1.73
NPL4YBR170C SUR1P33300 382 aa4.26□□□□□ -1.73
NPL4YBR170C MSN2P33748 704 aa4.26□□□□□ -1.73
NPL4YBR170C ROT2P38138 954 aa4.26□□□□□ -1.73
NPL4YBR170C VPS41P38959 992 aa4.26□□□□□ -1.73
NPL4YBR170C PAC2P39937 518 aa4.26□□□□□ -1.73
NPL4YBR170C HXT9P40885 567 aa4.26□□□□□ -1.73
NPL4YBR170C BUD32P53323 261 aa4.26□□□□□ -1.73
NPL4YBR170C YVH1Q02256 364 aaKnown RBP4.26□□□□□ -1.73
NPL4YBR170C MSL5Q12186 476 aaKnown RBP RIP-Chip data4.26□□□□□ -1.73not detected
NPL4YBR170C PUF2Q12221 1075 aaKnown RBP RIP-Chip data4.26□□□□□ -1.73not detected
NPL4YBR170C BRR1Q99177 341 aaPredicted RBP4.26□□□□□ -1.73
NPL4YBR170C PEP5P12868 1029 aa4.26□□□□□ -1.73
NPL4YBR170C SEC63P14906 663 aa4.26□□□□□ -1.73
NPL4YBR170C RHB1P25378 209 aa4.26□□□□□ -1.73
NPL4YBR170C DUG2P38149 878 aa4.26□□□□□ -1.73
NPL4YBR170C RFC3P38629 340 aa4.26□□□□□ -1.73
NPL4YBR170C YIL089WP40500 205 aa4.26□□□□□ -1.73
NPL4YBR170C TFG2P41896 400 aaPredicted RBP4.26□□□□□ -1.73
NPL4YBR170C PKP2P53170 491 aa4.26□□□□□ -1.73
NPL4YBR170C SMM1P53720 384 aaKnown RBP4.26□□□□□ -1.73
NPL4YBR170C SHR3Q02774 210 aa4.26□□□□□ -1.73
NPL4YBR170C SWF1Q04629 336 aa4.26□□□□□ -1.73
NPL4YBR170C YFH1Q07540 174 aa4.26□□□□□ -1.73
NPL4YBR170C NOP6Q07623 225 aaKnown RBP4.26□□□□□ -1.73
NPL4YBR170C MLH2Q07980 695 aa4.26□□□□□ -1.73
NPL4YBR170C RPC40P07703 335 aaKnown RBP4.25□□□□□ -1.73
NPL4YBR170C CRM1P30822 1084 aaKnown RBP4.25□□□□□ -1.73
NPL4YBR170C PCH2P38126 564 aa4.25□□□□□ -1.73
NPL4YBR170C SYG1P40528 902 aa4.25□□□□□ -1.73
NPL4YBR170C YJR154WP47181 346 aa4.25□□□□□ -1.73
NPL4YBR170C YNL143CP53908 130 aa4.25□□□□□ -1.73
NPL4YBR170C AQR1P53943 586 aa4.25□□□□□ -1.73
NPL4YBR170C FMP30Q02883 468 aa4.25□□□□□ -1.73
NPL4YBR170C TPO3Q06451 622 aa4.25□□□□□ -1.73
NPL4YBR170C NDL1Q06568 189 aa4.25□□□□□ -1.73
NPL4YBR170C POS5Q06892 414 aa4.25□□□□□ -1.73
NPL4YBR170C RTC5Q12108 567 aaKnown RBP4.25□□□□□ -1.73
NPL4YBR170C MDY2Q12285 212 aa4.25□□□□□ -1.73
NPL4YBR170C INO80P53115 1489 aa4.25□□□□□ -1.73
NPL4YBR170C COX3P00420 269 aa4.24□□□□□ -1.73
NPL4YBR170C PMR1P13586 950 aa4.24□□□□□ -1.73
NPL4YBR170C TAL1P15019 335 aaKnown RBP4.24□□□□□ -1.73
NPL4YBR170C TYR1P20049 452 aa4.24□□□□□ -1.73
NPL4YBR170C UBA1P22515 1024 aaKnown RBP4.24□□□□□ -1.73
NPL4YBR170C RIM1P32445 135 aaKnown RBP4.24□□□□□ -1.73
NPL4YBR170C ATP11P32453 318 aa4.24□□□□□ -1.73
NPL4YBR170C PRP21P32524 280 aaPredicted RBP4.24□□□□□ -1.73
NPL4YBR170C PCA1P38360 1216 aa4.24□□□□□ -1.73
NPL4YBR170C YER130CP39959 443 aa4.24□□□□□ -1.73
Retrieved 100 of 5,963 RNA–protein pairs in 22.6 ms