Protein–RNA interactions for Protein: Q04062

RPN9, 26S proteasome regulatory subunit RPN9, yeastyeast

Known RBP Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPN9Q04062 NSR1YGR159C 1245 nt20.49■□□□□ 0.87
RPN9Q04062 YML009W-BYML009W-B 477 nt20.48■□□□□ 0.87
RPN9Q04062 NOP1YDL014W 984 nt19.95■□□□□ 0.78
RPN9Q04062 YKL036CYKL036C 393 nt18.33■□□□□ 0.52
RPN9Q04062 MDJ1YFL016C 1536 nt18.18■□□□□ 0.5
RPN9Q04062 Q0297Q0297 156 nt17.46■□□□□ 0.39
RPN9Q04062 SRX1YKL086W 384 nt17.43■□□□□ 0.38
RPN9Q04062 YJL027CYJL027C 417 nt17.07■□□□□ 0.32
RPN9Q04062 SCS3YGL126W 1143 nt16.63■□□□□ 0.25
RPN9Q04062 YCR051WYCR051W 669 nt16.46■□□□□ 0.23
RPN9Q04062 DBP2YNL112W 1641 nt16.1■□□□□ 0.17
RPN9Q04062 YOL085CYOL085C 342 nt15.88■□□□□ 0.13
RPN9Q04062 TRN1tP(UGG)A 72 nt15.81■□□□□ 0.12
RPN9Q04062 SUF9tP(UGG)F 72 nt15.81■□□□□ 0.12
RPN9Q04062 SUF8tP(UGG)H 72 nt15.81■□□□□ 0.12
RPN9Q04062 tP(UGG)LtP(UGG)L 72 nt15.81■□□□□ 0.12
RPN9Q04062 SUF7tP(UGG)M 72 nt15.81■□□□□ 0.12
RPN9Q04062 tP(UGG)N1tP(UGG)N1 72 nt15.81■□□□□ 0.12
RPN9Q04062 tP(UGG)N2tP(UGG)N2 72 nt15.81■□□□□ 0.12
RPN9Q04062 tP(UGG)O1tP(UGG)O1 72 nt15.81■□□□□ 0.12
RPN9Q04062 SUF11tP(UGG)O2 72 nt15.81■□□□□ 0.12
RPN9Q04062 RPP1BYDL130W 321 nt15.65■□□□□ 0.1
RPN9Q04062 YBR190WYBR190W 312 nt15.58■□□□□ 0.08
RPN9Q04062 PKP1YIL042C 1185 nt15.57■□□□□ 0.08
RPN9Q04062 CCC1YLR220W 969 nt15.54■□□□□ 0.08
RPN9Q04062 RTC3YHR087W 336 nt15.15■□□□□ 0.02
RPN9Q04062 RVS167YDR388W 1449 nt15.13■□□□□ 0.01
RPN9Q04062 SCJ1YMR214W 1134 nt15.02■□□□□ -0
RPN9Q04062 PET122YER153C 765 nt14.92□□□□□ -0.02
RPN9Q04062 tP(UGG)O3tP(UGG)O3 72 nt14.91□□□□□ -0.02
RPN9Q04062 ATS1YAL020C 1002 nt14.87□□□□□ -0.03
RPN9Q04062 SCR1SCR1 522 nt14.76□□□□□ -0.05
RPN9Q04062 SHR5YOL110W 714 nt14.6□□□□□ -0.07
RPN9Q04062 RRN5YLR141W 1092 nt14.48□□□□□ -0.09
RPN9Q04062 YDJ1YNL064C 1230 nt14.47□□□□□ -0.09
RPN9Q04062 SSA3YBL075C 1950 nt14.23□□□□□ -0.13
RPN9Q04062 YER088W-BYER088W-B 147 nt14.21□□□□□ -0.13
RPN9Q04062 URN1YPR152C 1398 nt14.19□□□□□ -0.14
RPN9Q04062 PUT4YOR348C 1884 nt14.18□□□□□ -0.14
RPN9Q04062 RSB1YOR049C 1065 nt14.15□□□□□ -0.14
RPN9Q04062 DEP1YAL013W 1218 nt14.11□□□□□ -0.15
RPN9Q04062 GAR1YHR089C 618 nt14.07□□□□□ -0.16
RPN9Q04062 OPI9YLR338W 858 nt14.04□□□□□ -0.16
RPN9Q04062 RPN10YHR200W 807 nt14.01□□□□□ -0.17
RPN9Q04062 YNL208WYNL208W 600 nt13.97□□□□□ -0.17
RPN9Q04062 SAH1YER043C 1350 nt13.91□□□□□ -0.18
RPN9Q04062 ARE1YCR048W 1833 nt13.9□□□□□ -0.18
RPN9Q04062 PST2YDR032C 597 nt13.79□□□□□ -0.2
RPN9Q04062 YHR049C-AYHR049C-A 297 nt13.7□□□□□ -0.22
RPN9Q04062 POA1YBR022W 534 nt13.69□□□□□ -0.22
RPN9Q04062 PUN1YLR414C 792 nt13.64□□□□□ -0.23
RPN9Q04062 TIR1YER011W 765 nt13.63□□□□□ -0.23
RPN9Q04062 YJR018WYJR018W 363 nt13.54□□□□□ -0.24
RPN9Q04062 SSA1YAL005C 1929 nt13.47□□□□□ -0.25
RPN9Q04062 PTC2YER089C 1395 nt13.43□□□□□ -0.26
RPN9Q04062 BSC6YOL137W 1494 nt13.42□□□□□ -0.26
RPN9Q04062 YJR120WYJR120W 351 nt13.34□□□□□ -0.27
RPN9Q04062 BUD23YCR047C 828 nt13.33□□□□□ -0.28
RPN9Q04062 NAB2YGL122C 1578 nt13.29□□□□□ -0.28
RPN9Q04062 RPP2BYDR382W 333 nt13.26□□□□□ -0.29
RPN9Q04062 SHU1YHL006C 453 nt13.22□□□□□ -0.29
RPN9Q04062 SRB2YHR041C 633 nt13.22□□□□□ -0.29
RPN9Q04062 YKL097CYKL097C 411 nt13.19□□□□□ -0.3
RPN9Q04062 FIS1YIL065C 468 nt13.12□□□□□ -0.31
RPN9Q04062 DAL1YIR027C 1383 nt13.11□□□□□ -0.31
RPN9Q04062 INM2YDR287W 879 nt13.11□□□□□ -0.31
RPN9Q04062 WWM1YFL010C 636 nt13□□□□□ -0.33
RPN9Q04062 BDH2YAL061W 1254 nt13□□□□□ -0.33
RPN9Q04062 FPR4YLR449W 1179 nt12.99□□□□□ -0.33
RPN9Q04062 PHO4YFR034C 939 nt12.97□□□□□ -0.33
RPN9Q04062 YGR021WYGR021W 873 nt12.97□□□□□ -0.33
RPN9Q04062 YAL037C-BYAL037C-B 975 nt12.97□□□□□ -0.33
RPN9Q04062 YBL100CYBL100C 315 nt12.93□□□□□ -0.34
RPN9Q04062 HOM6YJR139C 1080 nt12.91□□□□□ -0.34
RPN9Q04062 SPT5YML010W 3192 nt12.89□□□□□ -0.35
RPN9Q04062 YFL021C-AYFL021C-A 855 nt12.85□□□□□ -0.35
RPN9Q04062 LSM3YLR438C-A 270 nt12.85□□□□□ -0.35
RPN9Q04062 FUN26YAL022C 1554 nt12.78□□□□□ -0.36
RPN9Q04062 MNP1YGL068W 585 nt12.77□□□□□ -0.37
RPN9Q04062 YPS1YLR120C 1710 nt12.76□□□□□ -0.37
RPN9Q04062 TRM9YML014W 840 nt12.74□□□□□ -0.37
RPN9Q04062 RKM5YLR137W 1104 nt12.71□□□□□ -0.37
RPN9Q04062 YDR095CYDR095C 411 nt12.69□□□□□ -0.38
RPN9Q04062 YOR139CYOR139C 393 nt12.68□□□□□ -0.38
RPN9Q04062 CCT6YDR188W 1641 nt12.66□□□□□ -0.38
RPN9Q04062 MEP2YNL142W 1500 nt12.62□□□□□ -0.39
RPN9Q04062 YOL037CYOL037C 354 nt12.62□□□□□ -0.39
RPN9Q04062 ALF1YNL148C 765 nt12.6□□□□□ -0.39
RPN9Q04062 YHR165W-AYHR165W-A 312 nt12.58□□□□□ -0.4
RPN9Q04062 NPL3YDR432W 1245 nt12.57□□□□□ -0.4
RPN9Q04062 SUF2tP(AGG)C 72 nt12.55□□□□□ -0.4
RPN9Q04062 SUF10tP(AGG)N 72 nt12.55□□□□□ -0.4
RPN9Q04062 SIS1YNL007C 1059 nt12.46□□□□□ -0.41
RPN9Q04062 RPP2AYOL039W 321 nt12.44□□□□□ -0.42
RPN9Q04062 SSA4YER103W 1929 nt12.39□□□□□ -0.43
RPN9Q04062 PTP1YDL230W 1008 nt12.39□□□□□ -0.43
RPN9Q04062 DCW1YKL046C 1350 nt12.39□□□□□ -0.43
RPN9Q04062 YLR281CYLR281C 468 nt12.31□□□□□ -0.44
RPN9Q04062 YLR154C-GYLR154C-G 150 nt12.27□□□□□ -0.45
RPN9Q04062 EMI2YDR516C 1503 nt12.27□□□□□ -0.45
Retrieved 100 of 7,029 protein–RNA pairs in 60.8 ms