RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C MTC1P47018 478 aaKnown RBP14.69□□□□□ -0.06
NPL4YBR170C FAP1P53971 965 aa14.1□□□□□ -0.15
NPL4YBR170C PRY3P47033 881 aa13.25□□□□□ -0.29
NPL4YBR170C DRS1P32892 752 aaKnown RBP12.98□□□□□ -0.33
NPL4YBR170C AAD16Q02895 342 aa12.84□□□□□ -0.35
NPL4YBR170C PRI1P10363 409 aa12.78□□□□□ -0.36
NPL4YBR170C HAA1Q12753 694 aaKnown RBP12.42□□□□□ -0.42
NPL4YBR170C ISW2Q08773 1120 aa12.4□□□□□ -0.43
NPL4YBR170C YCK3P39962 524 aa12.36□□□□□ -0.43
NPL4YBR170C RPG1P38249 964 aaKnown RBP12.23□□□□□ -0.45
NPL4YBR170C TSR3Q12094 313 aaKnown RBP12.03□□□□□ -0.48
NPL4YBR170C MRPL32P25348 183 aa11.64□□□□□ -0.55
NPL4YBR170C DIP2Q12220 943 aaPredicted RBP11.64□□□□□ -0.55
NPL4YBR170C RSE1Q04693 1361 aaKnown RBP11.49□□□□□ -0.57
NPL4YBR170C YGL015CP33199 130 aa11.37□□□□□ -0.59
NPL4YBR170C REB1P21538 810 aa11.21□□□□□ -0.61
NPL4YBR170C RPL17AP05740 184 aaKnown RBP11.15□□□□□ -0.62
NPL4YBR170C RPL17BP46990 184 aaKnown RBP11.15□□□□□ -0.62
NPL4YBR170C AVT3P36062 692 aa10.97□□□□□ -0.65
NPL4YBR170C CDC27P38042 758 aa10.83□□□□□ -0.68
NPL4YBR170C BUD31P25337 157 aaPredicted RBP10.71□□□□□ -0.69
NPL4YBR170C UBP10P53874 792 aaPredicted RBP10.7□□□□□ -0.7
NPL4YBR170C YKR023WP36119 530 aaKnown RBP10.61□□□□□ -0.71
NPL4YBR170C MAP2P38174 421 aaKnown RBP10.61□□□□□ -0.71
NPL4YBR170C SPT21P35209 758 aa10.57□□□□□ -0.72
NPL4YBR170C BFR2Q06631 534 aaKnown RBP10.45□□□□□ -0.74
NPL4YBR170C TFC8Q12308 588 aa10.43□□□□□ -0.74
NPL4YBR170C HOP09932 586 aa10.42□□□□□ -0.74
NPL4YBR170C DCD1P06773 312 aa10.37□□□□□ -0.75
NPL4YBR170C TIF4632P39936 914 aaKnown RBP10.31□□□□□ -0.76
NPL4YBR170C SCY1P53009 804 aa10.28□□□□□ -0.76
NPL4YBR170C SLX5P32828 619 aaKnown RBP10.23□□□□□ -0.77
NPL4YBR170C TGL3P40308 642 aa10.23□□□□□ -0.77
NPL4YBR170C UBP9P39967 754 aa10.21□□□□□ -0.78
NPL4YBR170C SIS1P25294 352 aaKnown RBP10.18□□□□□ -0.78
NPL4YBR170C RIM101P33400 625 aa10.06□□□□□ -0.8
NPL4YBR170C TFA1P36100 482 aa10.05□□□□□ -0.8
NPL4YBR170C BCH2P36122 765 aa10.05□□□□□ -0.8
NPL4YBR170C EPS1P40557 701 aa9.76□□□□□ -0.85
NPL4YBR170C BDF1P35817 686 aa9.73□□□□□ -0.85
NPL4YBR170C MST1P07236 462 aa9.68□□□□□ -0.86
NPL4YBR170C YOR238WQ08634 303 aa9.66□□□□□ -0.86
NPL4YBR170C OXP1P28273 1286 aa9.65□□□□□ -0.86
NPL4YBR170C YBL029C-AQ3E756 94 aa9.65□□□□□ -0.87
NPL4YBR170C PTP3P40048 928 aa9.64□□□□□ -0.87
NPL4YBR170C YIL055CP40523 627 aaKnown RBP9.63□□□□□ -0.87
NPL4YBR170C NSR1P27476 414 aaKnown RBP RIP-Chip data9.56□□□□□ -0.88not detected
NPL4YBR170C BBC1P47068 1157 aa9.53□□□□□ -0.88
NPL4YBR170C VNX1P42839 908 aa9.51□□□□□ -0.89
NPL4YBR170C YAP5P40574 245 aa9.49□□□□□ -0.89
NPL4YBR170C SPP1Q03012 353 aa9.47□□□□□ -0.89
NPL4YBR170C RSM7P47150 247 aa9.45□□□□□ -0.9
NPL4YBR170C WSC3Q12215 556 aa9.42□□□□□ -0.9
NPL4YBR170C AI2P03876 854 aa9.41□□□□□ -0.9
NPL4YBR170C GTT3P39996 337 aa9.34□□□□□ -0.91
NPL4YBR170C YJL171CP46992 396 aa9.34□□□□□ -0.91
NPL4YBR170C YAH1Q12184 172 aaKnown RBP9.33□□□□□ -0.92
NPL4YBR170C TIF11P38912 153 aaKnown RBP9.32□□□□□ -0.92
NPL4YBR170C AIR2Q12476 344 aaKnown RBP9.29□□□□□ -0.92
NPL4YBR170C FKH1P40466 484 aa9.28□□□□□ -0.92
NPL4YBR170C LDB19Q12502 818 aa9.17□□□□□ -0.94
NPL4YBR170C ULI1P43604 169 aa9.17□□□□□ -0.94
NPL4YBR170C RQC2Q12532 1038 aaKnown RBP9.17□□□□□ -0.94
NPL4YBR170C BMT6Q12291 365 aa9.13□□□□□ -0.95
NPL4YBR170C YLR271WQ06152 274 aa9.11□□□□□ -0.95
NPL4YBR170C PIB1Q06651 286 aa9.11□□□□□ -0.95
NPL4YBR170C IOC2Q12072 812 aa9.11□□□□□ -0.95
NPL4YBR170C PSD2P53037 1138 aaKnown RBP9.07□□□□□ -0.96
NPL4YBR170C MSB4Q12317 492 aa9.07□□□□□ -0.96
NPL4YBR170C EAP1P36041 632 aaKnown RBP9.05□□□□□ -0.96
NPL4YBR170C MRM1P25270 412 aa9.03□□□□□ -0.96
NPL4YBR170C RTG1P32607 177 aa8.95□□□□□ -0.98
NPL4YBR170C YOL036WQ08206 761 aa8.94□□□□□ -0.98
NPL4YBR170C SET4P42948 560 aa8.94□□□□□ -0.98
NPL4YBR170C ARP8Q12386 881 aaKnown RBP RIP-Chip data8.94□□□□□ -0.98not detected
NPL4YBR170C NCR1Q12200 1170 aa8.92□□□□□ -0.98
NPL4YBR170C TRP5P00931 707 aaKnown RBP8.91□□□□□ -0.98
NPL4YBR170C YMR1P47147 688 aaKnown RBP RIP-Chip data8.91□□□□□ -0.98not detected
NPL4YBR170C YNL035CP53962 389 aaKnown RBP8.88□□□□□ -0.99
NPL4YBR170C SEC61P32915 480 aa8.87□□□□□ -0.99
NPL4YBR170C DBP1P24784 617 aaKnown RBP8.86□□□□□ -0.99
NPL4YBR170C SSP1P38871 571 aa8.85□□□□□ -0.99
NPL4YBR170C TFG1P41895 735 aaPredicted RBP8.83□□□□□ -1
NPL4YBR170C RTG3P38165 486 aa8.82□□□□□ -1
NPL4YBR170C VPS29P38759 282 aa8.82□□□□□ -1
NPL4YBR170C VMA1P17255 1071 aaKnown RBP8.81□□□□□ -1
NPL4YBR170C YFR006WP43590 535 aa8.8□□□□□ -1
NPL4YBR170C SAM3Q08986 587 aa8.79□□□□□ -1
NPL4YBR170C STS1P38637 319 aa8.74□□□□□ -1.01
NPL4YBR170C CST9Q06032 482 aa8.74□□□□□ -1.01
NPL4YBR170C MGA2P40578 1113 aa8.73□□□□□ -1.01
NPL4YBR170C ABP1P15891 592 aaKnown RBP8.71□□□□□ -1.01
NPL4YBR170C JIP4Q03361 876 aa8.71□□□□□ -1.01
NPL4YBR170C SAP30P38429 201 aa8.7□□□□□ -1.02
NPL4YBR170C BCK2P33306 851 aa8.66□□□□□ -1.02
NPL4YBR170C DAN4P47179 1161 aa8.66□□□□□ -1.02
NPL4YBR170C YDL129WQ07555 291 aa8.66□□□□□ -1.02
NPL4YBR170C GYP5Q12344 894 aa8.66□□□□□ -1.02
NPL4YBR170C CHL1P22516 861 aaPredicted RBP8.65□□□□□ -1.03
NPL4YBR170C HTA1P04911 132 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 5,963 RNA–protein pairs in 26.7 ms