RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	GDE1	Q02979	1223 aa		1.01	□□□□□ -2.25
NIP1	YMR309C	DUS3	Q06053	668 aa	Known RBP	1.01	□□□□□ -2.25
NIP1	YMR309C	JIP5	Q06214	492 aa	Predicted RBP	1.01	□□□□□ -2.25
NIP1	YMR309C	ARO10	Q06408	635 aa		1.01	□□□□□ -2.25
NIP1	YMR309C	MET3	P08536	511 aa		1	□□□□□ -2.25
NIP1	YMR309C	HCA4	P20448	770 aa	Known RBP	1	□□□□□ -2.25
NIP1	YMR309C	SEC21	P32074	935 aa	Known RBP	1	□□□□□ -2.25
NIP1	YMR309C	CDC12	P32468	407 aa	Known RBP	1	□□□□□ -2.25
NIP1	YMR309C	ABD1	P32783	436 aa	Predicted RBP	1	□□□□□ -2.25
NIP1	YMR309C	YKR078W	P36158	585 aa	Known RBP	1	□□□□□ -2.25
NIP1	YMR309C	ELO3	P40319	345 aa		1	□□□□□ -2.25
NIP1	YMR309C	GYP7	P48365	746 aa		1	□□□□□ -2.25
NIP1	YMR309C	YKE2	P52553	114 aa		1	□□□□□ -2.25
NIP1	YMR309C	RAI1	P53063	387 aa	Known RBP	1	□□□□□ -2.25
NIP1	YMR309C	SFB2	P53953	876 aa		1	□□□□□ -2.25
NIP1	YMR309C	VPS30	Q02948	557 aa		1	□□□□□ -2.25
NIP1	YMR309C	DLT1	Q04216	342 aa		1	□□□□□ -2.25
NIP1	YMR309C	PEX19	Q07418	342 aa		1	□□□□□ -2.25
NIP1	YMR309C	TRM11	Q12463	433 aa		1	□□□□□ -2.25
NIP1	YMR309C	YIL166C	P40445	542 aa		1	□□□□□ -2.25
NIP1	YMR309C	SDP1	P40479	209 aa		1	□□□□□ -2.25
NIP1	YMR309C	FAA4	P47912	694 aa	Known RBP	1	□□□□□ -2.25
NIP1	YMR309C	TPO2	P53283	614 aa		1	□□□□□ -2.25
NIP1	YMR309C	RRP15	Q06511	250 aa	Predicted RBP	1	□□□□□ -2.25
NIP1	YMR309C	NOP8	Q08287	484 aa	Predicted RBP	1	□□□□□ -2.25
NIP1	YMR309C	TUB3	P09734	445 aa	Known RBP	0.99	□□□□□ -2.25
NIP1	YMR309C	CDC43	P18898	376 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	PRI2	P20457	528 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	RFA1	P22336	621 aa	Known RBP	0.99	□□□□□ -2.25
NIP1	YMR309C	ADY2	P25613	283 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	YUR1	P26725	428 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	AAR2	P32357	355 aa	Predicted RBP	0.99	□□□□□ -2.25
NIP1	YMR309C	CTF8	P38877	133 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	MBP1	P39678	833 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	MET10	P39692	1035 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	THI7	Q05998	598 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	ESC2	Q06340	456 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	YDR306C	Q06640	478 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	ADE8	P04161	214 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	MET6	P05694	767 aa	Known RBP	0.99	□□□□□ -2.25
NIP1	YMR309C	CAF20	P12962	161 aa	Known RBP	0.99	□□□□□ -2.25
NIP1	YMR309C	SBA1	P28707	216 aa	Known RBP	0.99	□□□□□ -2.25
NIP1	YMR309C	RGT1	P32862	1170 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	STE13	P33894	931 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	YRO2	P38079	344 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	YBR053C	P38235	358 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	TSL1	P38427	1098 aa	Known RBP	0.99	□□□□□ -2.25
NIP1	YMR309C	MUP1	P50276	574 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	RIA1	P53893	1110 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	SVF1	Q05515	481 aa		0.99	□□□□□ -2.25
NIP1	YMR309C	NOT3	P06102	836 aa	Known RBP	0.98	□□□□□ -2.25
NIP1	YMR309C	KIN3	P22209	435 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	SCT1	P32784	759 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	SSL1	Q04673	461 aa	Predicted RBP	0.98	□□□□□ -2.25
NIP1	YMR309C	RPS9A	O13516	197 aa	Known RBP	0.98	□□□□□ -2.25
NIP1	YMR309C	AGP1	P25376	633 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	DMC1	P25453	334 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	CDC48	P25694	835 aa	Known RBP	0.98	□□□□□ -2.25
NIP1	YMR309C	MRP8	P35719	219 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	VBA5	P36172	582 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	PCL5	P38794	229 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	VAC8	P39968	578 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	0.98	□□□□□ -2.25	not detected
NIP1	YMR309C	YJL163C	P46996	555 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	AMA1	P50082	593 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	PUS2	P53167	370 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	YGR053C	P53234	283 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	APM1	Q00776	475 aa	Predicted RBP	0.98	□□□□□ -2.25
NIP1	YMR309C	TDA5	Q06417	326 aa	Known RBP	0.98	□□□□□ -2.25
NIP1	YMR309C	OPI10	Q08202	246 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	SWM1	Q12379	170 aa		0.98	□□□□□ -2.25
NIP1	YMR309C	RPP1	P38786	293 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	FKH2	P41813	862 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	MRPS35	P53292	345 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	VPS16	Q03308	798 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	SGO1	Q08490	590 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	TAF3	Q12297	353 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	PRP9	P19736	530 aa	Known RBP	0.97	□□□□□ -2.25
NIP1	YMR309C	PRP4	P20053	465 aa	Known RBP	0.97	□□□□□ -2.25
NIP1	YMR309C	CDC11	P32458	415 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	PBY1	P38254	753 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	YIL108W	P40483	696 aa	Known RBP	0.97	□□□□□ -2.25
NIP1	YMR309C	CEP3	P40969	608 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	SNU71	P53207	620 aa	Known RBP	0.97	□□□□□ -2.25
NIP1	YMR309C	DAM1	P53267	343 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	ALD6	P54115	500 aa	Known RBP	0.97	□□□□□ -2.25
NIP1	YMR309C	CRR1	Q05790	422 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	MRI1	Q06489	411 aa	Known RBP	0.97	□□□□□ -2.25
NIP1	YMR309C	PIN2	Q12057	282 aa		0.97	□□□□□ -2.25
NIP1	YMR309C	WRS1	Q12109	432 aa	Known RBP	0.97	□□□□□ -2.25
NIP1	YMR309C	RPN13	O13563	156 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	NPP1	P25353	742 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	RPD3	P32561	433 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	ORC2	P32833	620 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	AFR1	P33304	620 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	YEL020C	P39994	560 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	FMP52	P40008	231 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	YIR042C	P40586	236 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	ALR2	P43553	858 aa		0.96	□□□□□ -2.26
NIP1	YMR309C	GAT1	P43574	510 aa		0.96	□□□□□ -2.26

Retrieved 100 of 5,963 RNA–protein pairs in 28.5 ms