Protein–RNA interactions for Protein: P18898

CDC43, Geranylgeranyl transferase type-1 subunit beta, yeastyeast

Predictions only

Length 376 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC43P18898 NSR1YGR159C 1245 nt14.1□□□□□ -0.15
CDC43P18898 YML009W-BYML009W-B 477 nt13.63□□□□□ -0.23
CDC43P18898 NOP1YDL014W 984 nt13.2□□□□□ -0.3
CDC43P18898 MDJ1YFL016C 1536 nt12.76□□□□□ -0.37
CDC43P18898 SSA3YBL075C 1950 nt12.29□□□□□ -0.44
CDC43P18898 YJL027CYJL027C 417 nt11.81□□□□□ -0.52
CDC43P18898 YKL036CYKL036C 393 nt11.73□□□□□ -0.53
CDC43P18898 SRX1YKL086W 384 nt11.53□□□□□ -0.56
CDC43P18898 Q0297Q0297 156 nt11.43□□□□□ -0.58
CDC43P18898 DBP2YNL112W 1641 nt11.19□□□□□ -0.62
CDC43P18898 YBR190WYBR190W 312 nt11.14□□□□□ -0.63
CDC43P18898 YCR051WYCR051W 669 nt10.81□□□□□ -0.68
CDC43P18898 PUT4YOR348C 1884 nt10.76□□□□□ -0.69
CDC43P18898 RTC3YHR087W 336 nt10.75□□□□□ -0.69
CDC43P18898 Q0182Q0182 405 nt10.74□□□□□ -0.69
CDC43P18898 TRN1tP(UGG)A 72 nt10.65□□□□□ -0.7
CDC43P18898 SUF9tP(UGG)F 72 nt10.65□□□□□ -0.7
CDC43P18898 SUF8tP(UGG)H 72 nt10.65□□□□□ -0.7
CDC43P18898 tP(UGG)LtP(UGG)L 72 nt10.65□□□□□ -0.7
CDC43P18898 SUF7tP(UGG)M 72 nt10.65□□□□□ -0.7
CDC43P18898 tP(UGG)N1tP(UGG)N1 72 nt10.65□□□□□ -0.7
CDC43P18898 tP(UGG)N2tP(UGG)N2 72 nt10.65□□□□□ -0.7
CDC43P18898 tP(UGG)O1tP(UGG)O1 72 nt10.65□□□□□ -0.7
CDC43P18898 SUF11tP(UGG)O2 72 nt10.65□□□□□ -0.7
CDC43P18898 SPT5YML010W 3192 nt10.64□□□□□ -0.71
CDC43P18898 SSA4YER103W 1929 nt10.58□□□□□ -0.72
CDC43P18898 CCC1YLR220W 969 nt10.45□□□□□ -0.74
CDC43P18898 RVS167YDR388W 1449 nt10.43□□□□□ -0.74
CDC43P18898 MOT3YMR070W 1473 nt10.39□□□□□ -0.75
CDC43P18898 SCS3YGL126W 1143 nt10.39□□□□□ -0.75
CDC43P18898 BDF1YLR399C 2061 nt10.35□□□□□ -0.75
CDC43P18898 ARE1YCR048W 1833 nt10.28□□□□□ -0.76
CDC43P18898 PAC11YDR488C 1602 nt10.28□□□□□ -0.76
CDC43P18898 POA1YBR022W 534 nt10.25□□□□□ -0.77
CDC43P18898 BSC6YOL137W 1494 nt10.24□□□□□ -0.77
CDC43P18898 RPP1BYDL130W 321 nt10.22□□□□□ -0.77
CDC43P18898 SCJ1YMR214W 1134 nt10.2□□□□□ -0.78
CDC43P18898 NVJ2YPR091C 2313 nt10.2□□□□□ -0.78
CDC43P18898 TAT1YBR069C 1860 nt10.19□□□□□ -0.78
CDC43P18898 YOL085CYOL085C 342 nt10.17□□□□□ -0.78
CDC43P18898 YHR049C-AYHR049C-A 297 nt10.09□□□□□ -0.79
CDC43P18898 SHR5YOL110W 714 nt9.98□□□□□ -0.81
CDC43P18898 PKP1YIL042C 1185 nt9.95□□□□□ -0.82
CDC43P18898 FPS1YLL043W 2010 nt9.95□□□□□ -0.82
CDC43P18898 URN1YPR152C 1398 nt9.94□□□□□ -0.82
CDC43P18898 OPI9YLR338W 858 nt9.94□□□□□ -0.82
CDC43P18898 tP(UGG)O3tP(UGG)O3 72 nt9.92□□□□□ -0.82
CDC43P18898 SAH1YER043C 1350 nt9.91□□□□□ -0.82
CDC43P18898 PET122YER153C 765 nt9.75□□□□□ -0.85
CDC43P18898 RPN10YHR200W 807 nt9.74□□□□□ -0.85
CDC43P18898 MEP2YNL142W 1500 nt9.73□□□□□ -0.85
CDC43P18898 DEP1YAL013W 1218 nt9.72□□□□□ -0.85
CDC43P18898 BUD23YCR047C 828 nt9.7□□□□□ -0.86
CDC43P18898 YDJ1YNL064C 1230 nt9.68□□□□□ -0.86
CDC43P18898 PUN1YLR414C 792 nt9.65□□□□□ -0.86
CDC43P18898 YJL225CYJL225C 5277 nt9.64□□□□□ -0.87
CDC43P18898 YNL208WYNL208W 600 nt9.64□□□□□ -0.87
CDC43P18898 RDN37-1RDN37-1 5354 nt9.6□□□□□ -0.87
CDC43P18898 RDN37-2RDN37-2 5354 nt9.6□□□□□ -0.87
CDC43P18898 SCR1SCR1 522 nt9.58□□□□□ -0.88
CDC43P18898 YBR220CYBR220C 1683 nt9.58□□□□□ -0.88
CDC43P18898 DCW1YKL046C 1350 nt9.56□□□□□ -0.88
CDC43P18898 PTC2YER089C 1395 nt9.54□□□□□ -0.88
CDC43P18898 NAB2YGL122C 1578 nt9.54□□□□□ -0.88
CDC43P18898 SSA1YAL005C 1929 nt9.52□□□□□ -0.88
CDC43P18898 UME6YDR207C 2511 nt9.49□□□□□ -0.89
CDC43P18898 YJR018WYJR018W 363 nt9.48□□□□□ -0.89
CDC43P18898 GUT2YIL155C 1950 nt9.48□□□□□ -0.89
CDC43P18898 RRN5YLR141W 1092 nt9.45□□□□□ -0.9
CDC43P18898 PCH2YBR186W 1695 nt9.45□□□□□ -0.9
CDC43P18898 GAR1YHR089C 618 nt9.4□□□□□ -0.9
CDC43P18898 EMI2YDR516C 1503 nt9.37□□□□□ -0.91
CDC43P18898 PIB2YGL023C 1908 nt9.37□□□□□ -0.91
CDC43P18898 FIS1YIL065C 468 nt9.37□□□□□ -0.91
CDC43P18898 NME1NME1 340 nt9.32□□□□□ -0.92
CDC43P18898 SDH1YKL148C 1923 nt9.32□□□□□ -0.92
CDC43P18898 DAL1YIR027C 1383 nt9.3□□□□□ -0.92
CDC43P18898 SEC11YIR022W 504 nt9.3□□□□□ -0.92
CDC43P18898 YPS1YLR120C 1710 nt9.3□□□□□ -0.92
CDC43P18898 YMR090WYMR090W 684 nt9.29□□□□□ -0.92
CDC43P18898 YER088W-BYER088W-B 147 nt9.27□□□□□ -0.93
CDC43P18898 INM2YDR287W 879 nt9.26□□□□□ -0.93
CDC43P18898 YDL221WYDL221W 552 nt9.25□□□□□ -0.93
CDC43P18898 YGR139WYGR139W 339 nt9.24□□□□□ -0.93
CDC43P18898 ATS1YAL020C 1002 nt9.21□□□□□ -0.94
CDC43P18898 YJR120WYJR120W 351 nt9.2□□□□□ -0.94
CDC43P18898 PHO4YFR034C 939 nt9.19□□□□□ -0.94
CDC43P18898 RPP2BYDR382W 333 nt9.17□□□□□ -0.94
CDC43P18898 TIR1YER011W 765 nt9.16□□□□□ -0.94
CDC43P18898 FPR4YLR449W 1179 nt9.16□□□□□ -0.94
CDC43P18898 YHR165W-AYHR165W-A 312 nt9.15□□□□□ -0.94
CDC43P18898 YDR095CYDR095C 411 nt9.11□□□□□ -0.95
CDC43P18898 CAC2YML102W 1407 nt9.1□□□□□ -0.95
CDC43P18898 SCC4YER147C 1875 nt9.1□□□□□ -0.95
CDC43P18898 RTF1YGL244W 1677 nt9.09□□□□□ -0.95
CDC43P18898 RSB1YOR049C 1065 nt9.08□□□□□ -0.96
CDC43P18898 BOR1YNL275W 1731 nt9.08□□□□□ -0.96
CDC43P18898 MCH5YOR306C 1566 nt9.04□□□□□ -0.96
CDC43P18898 PTP1YDL230W 1008 nt9.04□□□□□ -0.96
CDC43P18898 PTK1YKL198C 1989 nt9.03□□□□□ -0.96
Retrieved 100 of 7,029 protein–RNA pairs in 28.5 ms