Protein–RNA interactions for Protein: Q04673

SSL1, General transcription and DNA repair factor IIH subunit SSL1, yeastyeast

Predicted RBP Predictions only

Length 461 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL1Q04673 YML009W-BYML009W-B 477 nt20.16■□□□□ 0.82
SSL1Q04673 NSR1YGR159C 1245 nt20.1■□□□□ 0.81
SSL1Q04673 NOP1YDL014W 984 nt19.59■□□□□ 0.73
SSL1Q04673 YKL036CYKL036C 393 nt18.05■□□□□ 0.48
SSL1Q04673 MDJ1YFL016C 1536 nt17.87■□□□□ 0.45
SSL1Q04673 Q0297Q0297 156 nt17.16■□□□□ 0.34
SSL1Q04673 SRX1YKL086W 384 nt17.14■□□□□ 0.33
SSL1Q04673 YJL027CYJL027C 417 nt16.83■□□□□ 0.28
SSL1Q04673 SCS3YGL126W 1143 nt16.4■□□□□ 0.22
SSL1Q04673 YCR051WYCR051W 669 nt16.22■□□□□ 0.19
SSL1Q04673 DBP2YNL112W 1641 nt15.82■□□□□ 0.12
SSL1Q04673 YOL085CYOL085C 342 nt15.64■□□□□ 0.09
SSL1Q04673 TRN1tP(UGG)A 72 nt15.52■□□□□ 0.08
SSL1Q04673 SUF9tP(UGG)F 72 nt15.52■□□□□ 0.08
SSL1Q04673 SUF8tP(UGG)H 72 nt15.52■□□□□ 0.08
SSL1Q04673 tP(UGG)LtP(UGG)L 72 nt15.52■□□□□ 0.08
SSL1Q04673 SUF7tP(UGG)M 72 nt15.52■□□□□ 0.08
SSL1Q04673 tP(UGG)N1tP(UGG)N1 72 nt15.52■□□□□ 0.08
SSL1Q04673 tP(UGG)N2tP(UGG)N2 72 nt15.52■□□□□ 0.08
SSL1Q04673 tP(UGG)O1tP(UGG)O1 72 nt15.52■□□□□ 0.08
SSL1Q04673 SUF11tP(UGG)O2 72 nt15.52■□□□□ 0.08
SSL1Q04673 RPP1BYDL130W 321 nt15.39■□□□□ 0.05
SSL1Q04673 PKP1YIL042C 1185 nt15.39■□□□□ 0.05
SSL1Q04673 CCC1YLR220W 969 nt15.33■□□□□ 0.04
SSL1Q04673 YBR190WYBR190W 312 nt15.26■□□□□ 0.03
SSL1Q04673 RTC3YHR087W 336 nt14.89□□□□□ -0.03
SSL1Q04673 SCJ1YMR214W 1134 nt14.87□□□□□ -0.03
SSL1Q04673 RVS167YDR388W 1449 nt14.83□□□□□ -0.03
SSL1Q04673 PET122YER153C 765 nt14.71□□□□□ -0.05
SSL1Q04673 tP(UGG)O3tP(UGG)O3 72 nt14.66□□□□□ -0.06
SSL1Q04673 ATS1YAL020C 1002 nt14.66□□□□□ -0.06
SSL1Q04673 SCR1SCR1 522 nt14.52□□□□□ -0.09
SSL1Q04673 SHR5YOL110W 714 nt14.33□□□□□ -0.12
SSL1Q04673 RRN5YLR141W 1092 nt14.27□□□□□ -0.13
SSL1Q04673 YDJ1YNL064C 1230 nt14.2□□□□□ -0.14
SSL1Q04673 YER088W-BYER088W-B 147 nt14□□□□□ -0.17
SSL1Q04673 RSB1YOR049C 1065 nt13.95□□□□□ -0.18
SSL1Q04673 URN1YPR152C 1398 nt13.95□□□□□ -0.18
SSL1Q04673 DEP1YAL013W 1218 nt13.91□□□□□ -0.18
SSL1Q04673 PUT4YOR348C 1884 nt13.89□□□□□ -0.19
SSL1Q04673 GAR1YHR089C 618 nt13.86□□□□□ -0.19
SSL1Q04673 OPI9YLR338W 858 nt13.76□□□□□ -0.21
SSL1Q04673 RPN10YHR200W 807 nt13.72□□□□□ -0.21
SSL1Q04673 YNL208WYNL208W 600 nt13.71□□□□□ -0.21
SSL1Q04673 SAH1YER043C 1350 nt13.67□□□□□ -0.22
SSL1Q04673 ARE1YCR048W 1833 nt13.63□□□□□ -0.23
SSL1Q04673 PST2YDR032C 597 nt13.6□□□□□ -0.23
SSL1Q04673 YHR049C-AYHR049C-A 297 nt13.44□□□□□ -0.26
SSL1Q04673 POA1YBR022W 534 nt13.44□□□□□ -0.26
SSL1Q04673 TIR1YER011W 765 nt13.41□□□□□ -0.26
SSL1Q04673 PUN1YLR414C 792 nt13.35□□□□□ -0.27
SSL1Q04673 YJR018WYJR018W 363 nt13.3□□□□□ -0.28
SSL1Q04673 SSA1YAL005C 1929 nt13.26□□□□□ -0.29
SSL1Q04673 PTC2YER089C 1395 nt13.2□□□□□ -0.3
SSL1Q04673 BSC6YOL137W 1494 nt13.16□□□□□ -0.3
SSL1Q04673 YJR120WYJR120W 351 nt13.11□□□□□ -0.31
SSL1Q04673 BUD23YCR047C 828 nt13.1□□□□□ -0.31
SSL1Q04673 SHU1YHL006C 453 nt13.05□□□□□ -0.32
SSL1Q04673 SRB2YHR041C 633 nt13.05□□□□□ -0.32
SSL1Q04673 YKL097CYKL097C 411 nt13.04□□□□□ -0.32
SSL1Q04673 NAB2YGL122C 1578 nt13.03□□□□□ -0.32
SSL1Q04673 RPP2BYDR382W 333 nt13.01□□□□□ -0.33
SSL1Q04673 SSA3YBL075C 1950 nt13□□□□□ -0.33
SSL1Q04673 FIS1YIL065C 468 nt12.86□□□□□ -0.35
SSL1Q04673 DAL1YIR027C 1383 nt12.84□□□□□ -0.35
SSL1Q04673 YAL037C-BYAL037C-B 975 nt12.84□□□□□ -0.35
SSL1Q04673 INM2YDR287W 879 nt12.83□□□□□ -0.36
SSL1Q04673 WWM1YFL010C 636 nt12.81□□□□□ -0.36
SSL1Q04673 FPR4YLR449W 1179 nt12.79□□□□□ -0.36
SSL1Q04673 BDH2YAL061W 1254 nt12.77□□□□□ -0.37
SSL1Q04673 PHO4YFR034C 939 nt12.73□□□□□ -0.37
SSL1Q04673 YGR021WYGR021W 873 nt12.73□□□□□ -0.37
SSL1Q04673 HOM6YJR139C 1080 nt12.7□□□□□ -0.38
SSL1Q04673 YBL100CYBL100C 315 nt12.7□□□□□ -0.38
SSL1Q04673 YFL021C-AYFL021C-A 855 nt12.62□□□□□ -0.39
SSL1Q04673 MNP1YGL068W 585 nt12.61□□□□□ -0.39
SSL1Q04673 SPT5YML010W 3192 nt12.6□□□□□ -0.39
SSL1Q04673 LSM3YLR438C-A 270 nt12.6□□□□□ -0.39
SSL1Q04673 Q0182Q0182 405 nt12.58□□□□□ -0.4
SSL1Q04673 FUN26YAL022C 1554 nt12.56□□□□□ -0.4
SSL1Q04673 YOR139CYOR139C 393 nt12.53□□□□□ -0.4
SSL1Q04673 RKM5YLR137W 1104 nt12.51□□□□□ -0.41
SSL1Q04673 TRM9YML014W 840 nt12.51□□□□□ -0.41
SSL1Q04673 YPS1YLR120C 1710 nt12.5□□□□□ -0.41
SSL1Q04673 YDR095CYDR095C 411 nt12.42□□□□□ -0.42
SSL1Q04673 CCT6YDR188W 1641 nt12.41□□□□□ -0.42
SSL1Q04673 NPL3YDR432W 1245 nt12.41□□□□□ -0.42
SSL1Q04673 YOL037CYOL037C 354 nt12.39□□□□□ -0.43
SSL1Q04673 MOT3YMR070W 1473 nt12.36□□□□□ -0.43
SSL1Q04673 ALF1YNL148C 765 nt12.36□□□□□ -0.43
SSL1Q04673 MEP2YNL142W 1500 nt12.36□□□□□ -0.43
SSL1Q04673 YHR165W-AYHR165W-A 312 nt12.34□□□□□ -0.43
SSL1Q04673 SUF2tP(AGG)C 72 nt12.29□□□□□ -0.44
SSL1Q04673 SUF10tP(AGG)N 72 nt12.29□□□□□ -0.44
SSL1Q04673 SIS1YNL007C 1059 nt12.21□□□□□ -0.45
SSL1Q04673 RPP2AYOL039W 321 nt12.18□□□□□ -0.46
SSL1Q04673 DCW1YKL046C 1350 nt12.17□□□□□ -0.46
SSL1Q04673 PTP1YDL230W 1008 nt12.16□□□□□ -0.46
SSL1Q04673 YLR281CYLR281C 468 nt12.12□□□□□ -0.47
SSL1Q04673 SSA4YER103W 1929 nt12.11□□□□□ -0.47
Retrieved 100 of 7,029 protein–RNA pairs in 16.4 ms