Protein–RNA interactions for Protein: Q9Y5E1

PCDHB9, Protocadherin beta-9, humanhuman

Predictions only

Length 797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB9Q9Y5E1 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC34.54■■■■□ 3.12
PCDHB9Q9Y5E1 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC34.02■■■■□ 3.04
PCDHB9Q9Y5E1 AL356512.1-201ENST00000607453 1739 ntBASIC33.59■■■□□ 2.97
PCDHB9Q9Y5E1 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC33.59■■■□□ 2.97
PCDHB9Q9Y5E1 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.59■■■□□ 2.97
PCDHB9Q9Y5E1 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
PCDHB9Q9Y5E1 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
PCDHB9Q9Y5E1 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC33.17■■■□□ 2.9
PCDHB9Q9Y5E1 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.01■■■□□ 2.87
PCDHB9Q9Y5E1 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.74■■■□□ 2.83
PCDHB9Q9Y5E1 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.68■■■□□ 2.82
PCDHB9Q9Y5E1 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.48■■■□□ 2.79
PCDHB9Q9Y5E1 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.47■■■□□ 2.79
PCDHB9Q9Y5E1 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.3■■■□□ 2.76
PCDHB9Q9Y5E1 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC32.21■■■□□ 2.75
PCDHB9Q9Y5E1 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.13■■■□□ 2.73
PCDHB9Q9Y5E1 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC32.12■■■□□ 2.73
PCDHB9Q9Y5E1 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC32.09■■■□□ 2.73
PCDHB9Q9Y5E1 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC32.02■■■□□ 2.72
PCDHB9Q9Y5E1 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
PCDHB9Q9Y5E1 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC31.84■■■□□ 2.69
PCDHB9Q9Y5E1 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC31.83■■■□□ 2.69
PCDHB9Q9Y5E1 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
PCDHB9Q9Y5E1 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
PCDHB9Q9Y5E1 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
PCDHB9Q9Y5E1 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
PCDHB9Q9Y5E1 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
PCDHB9Q9Y5E1 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
PCDHB9Q9Y5E1 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.24■■■□□ 2.59
PCDHB9Q9Y5E1 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC31.22■■■□□ 2.59
PCDHB9Q9Y5E1 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
PCDHB9Q9Y5E1 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.22■■■□□ 2.59
PCDHB9Q9Y5E1 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PCDHB9Q9Y5E1 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
PCDHB9Q9Y5E1 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC31.17■■■□□ 2.58
PCDHB9Q9Y5E1 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.1■■■□□ 2.57
PCDHB9Q9Y5E1 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
PCDHB9Q9Y5E1 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PCDHB9Q9Y5E1 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC30.95■■■□□ 2.55
PCDHB9Q9Y5E1 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC30.95■■■□□ 2.54
PCDHB9Q9Y5E1 INO80B-203ENST00000409917 796 ntTSL 2 BASIC30.86■■■□□ 2.53
PCDHB9Q9Y5E1 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC30.86■■■□□ 2.53
PCDHB9Q9Y5E1 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
PCDHB9Q9Y5E1 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.8■■■□□ 2.52
PCDHB9Q9Y5E1 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.73■■■□□ 2.51
PCDHB9Q9Y5E1 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
PCDHB9Q9Y5E1 ZNRF2P1-201ENST00000441407 443 ntBASIC30.71■■■□□ 2.51
PCDHB9Q9Y5E1 AC006077.2-201ENST00000623591 457 ntBASIC30.7■■■□□ 2.51
PCDHB9Q9Y5E1 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
PCDHB9Q9Y5E1 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.64■■■□□ 2.5
PCDHB9Q9Y5E1 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC30.61■■■□□ 2.49
PCDHB9Q9Y5E1 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
PCDHB9Q9Y5E1 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC30.54■■■□□ 2.48
PCDHB9Q9Y5E1 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.5■■■□□ 2.47
PCDHB9Q9Y5E1 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
PCDHB9Q9Y5E1 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.49■■■□□ 2.47
PCDHB9Q9Y5E1 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC30.43■■■□□ 2.46
PCDHB9Q9Y5E1 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
PCDHB9Q9Y5E1 AC015813.7-201ENST00000623294 581 ntBASIC30.36■■■□□ 2.45
PCDHB9Q9Y5E1 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC30.33■■■□□ 2.45
PCDHB9Q9Y5E1 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC30.29■■■□□ 2.44
PCDHB9Q9Y5E1 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
PCDHB9Q9Y5E1 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
PCDHB9Q9Y5E1 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.04■■■□□ 2.4
PCDHB9Q9Y5E1 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
PCDHB9Q9Y5E1 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
PCDHB9Q9Y5E1 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.95■■■□□ 2.38
PCDHB9Q9Y5E1 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
PCDHB9Q9Y5E1 AP002365.1-201ENST00000603448 772 ntBASIC29.93■■■□□ 2.38
PCDHB9Q9Y5E1 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
PCDHB9Q9Y5E1 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
PCDHB9Q9Y5E1 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC29.81■■■□□ 2.36
PCDHB9Q9Y5E1 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
PCDHB9Q9Y5E1 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCDHB9Q9Y5E1 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
PCDHB9Q9Y5E1 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
PCDHB9Q9Y5E1 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC29.77■■■□□ 2.36
PCDHB9Q9Y5E1 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
PCDHB9Q9Y5E1 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC29.75■■■□□ 2.35
PCDHB9Q9Y5E1 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
PCDHB9Q9Y5E1 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
PCDHB9Q9Y5E1 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
PCDHB9Q9Y5E1 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC29.66■■■□□ 2.34
PCDHB9Q9Y5E1 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC29.64■■■□□ 2.34
PCDHB9Q9Y5E1 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
PCDHB9Q9Y5E1 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC29.62■■■□□ 2.33
PCDHB9Q9Y5E1 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
PCDHB9Q9Y5E1 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
PCDHB9Q9Y5E1 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PCDHB9Q9Y5E1 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC29.56■■■□□ 2.32
PCDHB9Q9Y5E1 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC29.55■■■□□ 2.32
PCDHB9Q9Y5E1 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
PCDHB9Q9Y5E1 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC29.52■■■□□ 2.32
PCDHB9Q9Y5E1 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.51■■■□□ 2.31
PCDHB9Q9Y5E1 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC29.49■■■□□ 2.31
PCDHB9Q9Y5E1 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
PCDHB9Q9Y5E1 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC29.47■■■□□ 2.31
PCDHB9Q9Y5E1 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC29.46■■■□□ 2.31
PCDHB9Q9Y5E1 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
PCDHB9Q9Y5E1 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms