Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC31■■■□□ 2.55
COL12A1Q99715 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC30.8■■■□□ 2.52
COL12A1Q99715 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
COL12A1Q99715 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL12A1Q99715 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL12A1Q99715 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
COL12A1Q99715 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
COL12A1Q99715 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC29.56■■■□□ 2.32
COL12A1Q99715 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
COL12A1Q99715 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC29.53■■■□□ 2.32
COL12A1Q99715 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC29.52■■■□□ 2.32
COL12A1Q99715 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
COL12A1Q99715 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC29.25■■■□□ 2.27
COL12A1Q99715 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC29.19■■■□□ 2.26
COL12A1Q99715 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
COL12A1Q99715 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
COL12A1Q99715 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC29.03■■■□□ 2.24
COL12A1Q99715 AC006077.2-201ENST00000623591 457 ntBASIC28.8■■■□□ 2.2
COL12A1Q99715 AL356512.1-201ENST00000607453 1739 ntBASIC28.75■■■□□ 2.19
COL12A1Q99715 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC28.72■■■□□ 2.19
COL12A1Q99715 ZNRF2P1-201ENST00000441407 443 ntBASIC28.66■■■□□ 2.18
COL12A1Q99715 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL12A1Q99715 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL12A1Q99715 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC28.57■■■□□ 2.16
COL12A1Q99715 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL12A1Q99715 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL12A1Q99715 INO80B-203ENST00000409917 796 ntTSL 2 BASIC28.56■■■□□ 2.16
COL12A1Q99715 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC28.44■■■□□ 2.14
COL12A1Q99715 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
COL12A1Q99715 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC28.33■■■□□ 2.13
COL12A1Q99715 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC28.13■■■□□ 2.09
COL12A1Q99715 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC28.1■■■□□ 2.09
COL12A1Q99715 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
COL12A1Q99715 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC28.04■■■□□ 2.08
COL12A1Q99715 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC27.94■■■□□ 2.06
COL12A1Q99715 AP002365.1-201ENST00000603448 772 ntBASIC27.91■■■□□ 2.06
COL12A1Q99715 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC27.85■■■□□ 2.05
COL12A1Q99715 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC27.85■■■□□ 2.05
COL12A1Q99715 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC27.85■■■□□ 2.05
COL12A1Q99715 AC015813.7-201ENST00000623294 581 ntBASIC27.84■■■□□ 2.05
COL12A1Q99715 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC27.83■■■□□ 2.05
COL12A1Q99715 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC27.81■■■□□ 2.04
COL12A1Q99715 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC27.74■■■□□ 2.03
COL12A1Q99715 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC27.64■■■□□ 2.02
COL12A1Q99715 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC27.61■■■□□ 2.01
COL12A1Q99715 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
COL12A1Q99715 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC27.6■■■□□ 2.01
COL12A1Q99715 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
COL12A1Q99715 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
COL12A1Q99715 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC27.38■■□□□ 1.97
COL12A1Q99715 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
COL12A1Q99715 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC27.33■■□□□ 1.97
COL12A1Q99715 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC27.32■■□□□ 1.96
COL12A1Q99715 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC27.32■■□□□ 1.96
COL12A1Q99715 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC27.31■■□□□ 1.96
COL12A1Q99715 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC27.29■■□□□ 1.96
COL12A1Q99715 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
COL12A1Q99715 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL12A1Q99715 HES6-203ENST00000409160 1600 ntTSL 2 BASIC27.23■■□□□ 1.95
COL12A1Q99715 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC27.22■■□□□ 1.95
COL12A1Q99715 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC27.21■■□□□ 1.95
COL12A1Q99715 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC27.21■■□□□ 1.95
COL12A1Q99715 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC27.2■■□□□ 1.95
COL12A1Q99715 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC27.19■■□□□ 1.94
COL12A1Q99715 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
COL12A1Q99715 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC27.15■■□□□ 1.94
COL12A1Q99715 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
COL12A1Q99715 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC27.1■■□□□ 1.93
COL12A1Q99715 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC27.09■■□□□ 1.93
COL12A1Q99715 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
COL12A1Q99715 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
COL12A1Q99715 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
COL12A1Q99715 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
COL12A1Q99715 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC27■■□□□ 1.91
COL12A1Q99715 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
COL12A1Q99715 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.96■■□□□ 1.91
COL12A1Q99715 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.96■■□□□ 1.91
COL12A1Q99715 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.96■■□□□ 1.91
COL12A1Q99715 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.95■■□□□ 1.91
COL12A1Q99715 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC26.95■■□□□ 1.9
COL12A1Q99715 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
COL12A1Q99715 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.94■■□□□ 1.9
COL12A1Q99715 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.93■■□□□ 1.9
COL12A1Q99715 RPS2P35-201ENST00000443417 897 ntBASIC26.93■■□□□ 1.9
COL12A1Q99715 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
COL12A1Q99715 DYNLL1-208ENST00000550178 581 ntBASIC26.92■■□□□ 1.9
COL12A1Q99715 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.92■■□□□ 1.9
COL12A1Q99715 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC26.88■■□□□ 1.89
COL12A1Q99715 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
COL12A1Q99715 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
COL12A1Q99715 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC26.79■■□□□ 1.88
COL12A1Q99715 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
COL12A1Q99715 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
COL12A1Q99715 RARRES2P7-201ENST00000567349 469 ntBASIC26.75■■□□□ 1.87
COL12A1Q99715 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.74■■□□□ 1.87
COL12A1Q99715 AC136428.2-201ENST00000563187 214 ntBASIC26.68■■□□□ 1.86
COL12A1Q99715 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL12A1Q99715 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
COL12A1Q99715 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
COL12A1Q99715 SUZ12P1-203ENST00000578195 985 ntBASIC26.61■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms