Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TNRC6A-216ENST00000569098 587 ntTSL 56.18□□□□□ -1.421e-6■■□□□ 11.6
DDX55Q8NHQ9 RBPMS-212ENST00000520971 315 ntTSL 25.62□□□□□ -1.515e-8■■□□□ 11.6
DDX55Q8NHQ9 MESD-202ENST00000422879 1392 ntTSL 220.3■□□□□ 0.846e-18■■□□□ 11.6
DDX55Q8NHQ9 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.156e-18■■□□□ 11.6
DDX55Q8NHQ9 MESD-206ENST00000561312 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.216e-18■■□□□ 11.6
DDX55Q8NHQ9 MESD-203ENST00000559537 539 ntTSL 413.1□□□□□ -0.316e-18■■□□□ 11.6
DDX55Q8NHQ9 MESD-204ENST00000560189 936 ntTSL 512.34□□□□□ -0.436e-18■■□□□ 11.6
DDX55Q8NHQ9 MESD-205ENST00000560244 981 ntTSL 511.77□□□□□ -0.536e-18■■□□□ 11.6
DDX55Q8NHQ9 MESD-207ENST00000619987 3978 ntTSL 1 (best)11.65□□□□□ -0.546e-18■■□□□ 11.6
DDX55Q8NHQ9 TRIM28-206ENST00000595974 665 ntTSL 319.8■□□□□ 0.762e-7■■□□□ 11.6
DDX55Q8NHQ9 COX7A2L-205ENST00000464443 895 ntTSL 322.79■■□□□ 1.242e-25■■□□□ 11.6
DDX55Q8NHQ9 COX7A2L-208ENST00000607768 614 ntTSL 311.68□□□□□ -0.542e-25■■□□□ 11.6
DDX55Q8NHQ9 ADH5-206ENST00000507102 570 ntTSL 27.43□□□□□ -1.222e-6■■□□□ 11.6
DDX55Q8NHQ9 ADH5-202ENST00000502386 545 ntTSL 56.82□□□□□ -1.322e-6■■□□□ 11.6
DDX55Q8NHQ9 GPX3-205ENST00000520597 632 ntTSL 219.76■□□□□ 0.752e-17■■□□□ 11.6
DDX55Q8NHQ9 TMEM214-205ENST00000434544 834 ntTSL 220.3■□□□□ 0.846e-8■■□□□ 11.6
DDX55Q8NHQ9 TMEM214-210ENST00000469445 900 ntTSL 213.67□□□□□ -0.226e-8■■□□□ 11.6
DDX55Q8NHQ9 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.253e-9■■□□□ 11.6
DDX55Q8NHQ9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.8■■■□□ 2.681e-7■■□□□ 11.6
DDX55Q8NHQ9 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.241e-7■■□□□ 11.6
DDX55Q8NHQ9 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC16.04■□□□□ 0.161e-7■■□□□ 11.6
DDX55Q8NHQ9 UBE2A-210ENST00000630695 1771 ntTSL 4 BASIC14.48□□□□□ -0.091e-7■■□□□ 11.6
DDX55Q8NHQ9 UBE2A-211ENST00000631185 1435 ntTSL 5 BASIC14.32□□□□□ -0.121e-7■■□□□ 11.6
DDX55Q8NHQ9 UBE2A-208ENST00000628734 600 ntTSL 24.38□□□□□ -1.711e-7■■□□□ 11.6
DDX55Q8NHQ9 UBE2A-203ENST00000371569 2643 ntTSL 1 (best)2.1□□□□□ -2.071e-7■■□□□ 11.6
DDX55Q8NHQ9 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC14.23□□□□□ -0.132e-7■■□□□ 11.6
DDX55Q8NHQ9 ERBB2-201ENST00000269571 4545 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.32e-7■■□□□ 11.6
DDX55Q8NHQ9 ERBB2-206ENST00000578373 4523 ntTSL 1 (best)12.82□□□□□ -0.362e-7■■□□□ 11.6
DDX55Q8NHQ9 ERBB2-204ENST00000541774 4341 ntTSL 5 BASIC12.3□□□□□ -0.442e-7■■□□□ 11.6
DDX55Q8NHQ9 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.98e-15■■□□□ 11.6
DDX55Q8NHQ9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.422e-13■■□□□ 11.6
DDX55Q8NHQ9 ATP5D-203ENST00000588538 1393 ntTSL 1 (best)23.37■■□□□ 1.332e-13■■□□□ 11.6
DDX55Q8NHQ9 ATP5D-205ENST00000590265 1144 ntTSL 1 (best)22.38■■□□□ 1.172e-13■■□□□ 11.6
DDX55Q8NHQ9 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC22.38■■□□□ 1.172e-13■■□□□ 11.6
DDX55Q8NHQ9 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.582e-13■■□□□ 11.6
DDX55Q8NHQ9 LRP1-211ENST00000556356 5114 ntTSL 216.1■□□□□ 0.175e-7■■□□□ 11.5
DDX55Q8NHQ9 APOC4-APOC2-201ENST00000585685 1829 ntTSL 517.78■□□□□ 0.449e-7■■□□□ 11.5
DDX55Q8NHQ9 APOC2-201ENST00000252490 727 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.019e-7■■□□□ 11.5
DDX55Q8NHQ9 APOC4-APOC2-202ENST00000589057 680 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.199e-7■■□□□ 11.5
DDX55Q8NHQ9 APOC2-202ENST00000585786 880 ntTSL 2 BASIC10.34□□□□□ -0.759e-7■■□□□ 11.5
DDX55Q8NHQ9 APOC2-204ENST00000591597 447 ntTSL 5 BASIC10.34□□□□□ -0.759e-7■■□□□ 11.5
DDX55Q8NHQ9 APOC2-205ENST00000592257 444 ntTSL 3 BASIC7.92□□□□□ -1.149e-7■■□□□ 11.5
DDX55Q8NHQ9 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC6.72□□□□□ -1.339e-7■■□□□ 11.5
DDX55Q8NHQ9 LAMA5-203ENST00000370691 3160 ntTSL 1 (best)14.81□□□□□ -0.042e-7■■□□□ 11.5
DDX55Q8NHQ9 LGALS3BP-207ENST00000587311 1905 ntTSL 219.62■□□□□ 0.733e-9■■□□□ 11.5
DDX55Q8NHQ9 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.613e-9■■□□□ 11.5
DDX55Q8NHQ9 LGALS3BP-204ENST00000586720 1736 ntTSL 518.7■□□□□ 0.583e-9■■□□□ 11.5
DDX55Q8NHQ9 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC18.5■□□□□ 0.553e-9■■□□□ 11.5
DDX55Q8NHQ9 LGALS3BP-205ENST00000587251 2091 ntTSL 518■□□□□ 0.473e-9■■□□□ 11.5
DDX55Q8NHQ9 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.453e-9■■□□□ 11.5
DDX55Q8NHQ9 TUBA1C-203ENST00000548470 1105 ntTSL 214.13□□□□□ -0.153e-9■■□□□ 11.5
DDX55Q8NHQ9 LGALS3BP-201ENST00000262776 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.283e-9■■□□□ 11.5
DDX55Q8NHQ9 TUBA1C-209ENST00000552448 1800 ntTSL 311.81□□□□□ -0.523e-9■■□□□ 11.5
DDX55Q8NHQ9 TUBA1C-210ENST00000639419 1075 ntTSL 5 BASIC11.4□□□□□ -0.583e-9■■□□□ 11.5
DDX55Q8NHQ9 TUBA1C-202ENST00000541364 1695 ntTSL 2 BASIC11.04□□□□□ -0.643e-9■■□□□ 11.5
DDX55Q8NHQ9 PLD1-208ENST00000463281 694 ntTSL 45.16□□□□□ -1.581e-7■■□□□ 11.5
DDX55Q8NHQ9 MYL6-204ENST00000546630 544 ntTSL 1 (best)17.5■□□□□ 0.391e-19■■□□□ 11.5
DDX55Q8NHQ9 BRI3-203ENST00000473967 819 ntTSL 518.32■□□□□ 0.524e-10■■□□□ 11.5
DDX55Q8NHQ9 BRI3-206ENST00000491463 567 ntTSL 413.18□□□□□ -0.34e-10■■□□□ 11.5
DDX55Q8NHQ9 NCL-207ENST00000461347 3967 ntTSL 215.32■□□□□ 0.041e-27■■□□□ 11.5
DDX55Q8NHQ9 HSPA9-202ENST00000501917 275 ntTSL 33.66□□□□□ -1.827e-20■■□□□ 11.5
DDX55Q8NHQ9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.665e-39■■□□□ 11.5
DDX55Q8NHQ9 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.115e-39■■□□□ 11.5
DDX55Q8NHQ9 FAM178B-202ENST00000470789 722 ntTSL 1 (best)13.85□□□□□ -0.195e-39■■□□□ 11.5
DDX55Q8NHQ9 HNRNPA3-203ENST00000432457 643 ntTSL 311.52□□□□□ -0.573e-8■■□□□ 11.5
DDX55Q8NHQ9 HNRNPA3-205ENST00000483137 627 ntTSL 210.72□□□□□ -0.693e-8■■□□□ 11.5
DDX55Q8NHQ9 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.22e-7■■□□□ 11.5
DDX55Q8NHQ9 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC25.34■■□□□ 1.654e-7■■□□□ 11.5
DDX55Q8NHQ9 SNX17-203ENST00000440760 1955 ntTSL 1 (best)21.82■■□□□ 1.089e-8■■□□□ 11.5
DDX55Q8NHQ9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.019e-8■■□□□ 11.5
DDX55Q8NHQ9 SNX17-202ENST00000427123 2007 ntTSL 220.74■□□□□ 0.919e-8■■□□□ 11.5
DDX55Q8NHQ9 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.22■□□□□ 0.679e-8■■□□□ 11.5
DDX55Q8NHQ9 SNX17-204ENST00000453453 1638 ntTSL 1 (best)18.18■□□□□ 0.59e-8■■□□□ 11.5
DDX55Q8NHQ9 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.788e-21■■□□□ 11.5
DDX55Q8NHQ9 RPL21-202ENST00000311549 815 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.288e-21■■□□□ 11.5
DDX55Q8NHQ9 RPL21-201ENST00000272274 616 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.398e-21■■□□□ 11.5
DDX55Q8NHQ9 RPL21-204ENST00000326092 641 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.478e-21■■□□□ 11.5
DDX55Q8NHQ9 RPL21-208ENST00000483765 453 ntTSL 36.22□□□□□ -1.418e-21■■□□□ 11.5
DDX55Q8NHQ9 RPL21-205ENST00000461690 681 ntTSL 55.39□□□□□ -1.558e-21■■□□□ 11.5
DDX55Q8NHQ9 INO80E-214ENST00000620599 515 ntTSL 2 BASIC24.9■■□□□ 1.582e-7■■□□□ 11.5
DDX55Q8NHQ9 INO80E-212ENST00000568043 482 ntTSL 223.15■■□□□ 1.32e-7■■□□□ 11.5
DDX55Q8NHQ9 INO80E-202ENST00000380503 435 ntTSL 219.69■□□□□ 0.742e-7■■□□□ 11.5
DDX55Q8NHQ9 INO80E-206ENST00000563040 563 ntTSL 319.69■□□□□ 0.742e-7■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-220ENST00000622587 802 ntTSL 522.67■■□□□ 1.222e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.172e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-215ENST00000546172 869 ntTSL 522.06■■□□□ 1.122e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-212ENST00000540530 1707 ntTSL 220.47■□□□□ 0.872e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.47■□□□□ 0.872e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-213ENST00000543289 3356 ntTSL 219.29■□□□□ 0.682e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.98■□□□□ 0.632e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-205ENST00000534853 745 ntTSL 518.97■□□□□ 0.632e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-214ENST00000545446 3089 ntTSL 214.96□□□□□ -0.022e-8■■□□□ 11.5
DDX55Q8NHQ9 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC14.7□□□□□ -0.062e-8■■□□□ 11.5
DDX55Q8NHQ9 MPDU1-210ENST00000572836 1523 ntTSL 221.99■■□□□ 1.111e-6■■□□□ 11.5
DDX55Q8NHQ9 MPDU1-216ENST00000577088 1645 ntTSL 219.24■□□□□ 0.671e-6■■□□□ 11.5
DDX55Q8NHQ9 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.461e-6■■□□□ 11.5
DDX55Q8NHQ9 MPDU1-227ENST00000585217 438 ntTSL 314.87□□□□□ -0.031e-6■■□□□ 11.5
DDX55Q8NHQ9 MPDU1-203ENST00000396501 1125 ntTSL 2 BASIC14.84□□□□□ -0.031e-6■■□□□ 11.5
DDX55Q8NHQ9 MPDU1-212ENST00000574558 900 ntTSL 312.2□□□□□ -0.461e-6■■□□□ 11.5
DDX55Q8NHQ9 MPDU1-204ENST00000423172 888 ntTSL 2 BASIC10.93□□□□□ -0.661e-6■■□□□ 11.5
Retrieved 100 of 15,504 protein–RNA pairs in 145.8 ms