RNA–Protein interactions for RNA: ENST00000537606.5

SNX17-210, Transcript of sorting nexin 17, humanhuman

TSL 2 BASIC

Gene SNX17, Length 2,400 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-210ENST00000537606 NISCHQ9Y2I1 1504 aa38.12■■■■□ 3.69
SNX17-210ENST00000537606 CCDC180Q9P1Z9 1646 aa32.77■■■□□ 2.84
SNX17-210ENST00000537606 ZCCHC6Q5VYS8 1495 aaKnown RBP32.09■■■□□ 2.73
SNX17-210ENST00000537606 SHROOM4Q9ULL8 1493 aa31.94■■■□□ 2.7
SNX17-210ENST00000537606 DCAF8L2P0C7V8 631 aa31.87■■■□□ 2.69
SNX17-210ENST00000537606 DCAF1Q9Y4B6 1507 aa31.29■■■□□ 2.6
SNX17-210ENST00000537606 ABCC9O60706 1549 aa31.03■■■□□ 2.56
SNX17-210ENST00000537606 SUPT5HO00267 1087 aaKnown RBP30.97■■■□□ 2.55
SNX17-210ENST00000537606 MYO15BQ96JP2 1530 aa30.67■■■□□ 2.5
SNX17-210ENST00000537606 SCRIBQ14160 1630 aa30.58■■■□□ 2.49
SNX17-210ENST00000537606 NACADO15069 1562 aa30.49■■■□□ 2.47
SNX17-210ENST00000537606 RB1CC1Q8TDY2 1594 aa30.16■■■□□ 2.42
SNX17-210ENST00000537606 RSF1Q96T23 1441 aaPredicted RBP29.87■■■□□ 2.37
SNX17-210ENST00000537606 CECR2Q9BXF3 1484 aa29.79■■■□□ 2.36
SNX17-210ENST00000537606 CHIC1Q5VXU3 224 aa29.73■■■□□ 2.35
SNX17-210ENST00000537606 UNC13AQ9UPW8 1703 aa29.66■■■□□ 2.34
SNX17-210ENST00000537606 MROH2BQ7Z745 1585 aa29.6■■■□□ 2.33
SNX17-210ENST00000537606 PABPN1Q86U42 306 aaKnown RBP eCLIP29.53■■■□□ 2.32
SNX17-210ENST00000537606 WIZO95785 1651 aa29.39■■■□□ 2.3
SNX17-210ENST00000537606 BICRAQ9NZM4 1560 aa29.35■■■□□ 2.29
SNX17-210ENST00000537606 BAZ1AQ9NRL2 1556 aaPredicted RBP29.34■■■□□ 2.29
SNX17-210ENST00000537606 SMARCA4P51532 1647 aa29.19■■■□□ 2.26
SNX17-210ENST00000537606 TOP2AP11388 1531 aaKnown RBP28.92■■■□□ 2.22
SNX17-210ENST00000537606 TRIM41Q8WV44 630 aa28.92■■■□□ 2.22
SNX17-210ENST00000537606 LOC105371045A0A1W2PR82 267 aa28.83■■■□□ 2.21
SNX17-210ENST00000537606 CCDC88BA6NC98 1476 aa28.8■■■□□ 2.2
SNX17-210ENST00000537606 SMARCA2P51531 1590 aa28.74■■■□□ 2.19
SNX17-210ENST00000537606 PEG3Q9GZU2 1588 aa28.67■■■□□ 2.18
SNX17-210ENST00000537606 FAM9AQ8IZU1 332 aaPredicted RBP28.65■■■□□ 2.18
SNX17-210ENST00000537606 ATAD2BQ9ULI0 1458 aa28.64■■■□□ 2.18
SNX17-210ENST00000537606 EIF4G1Q04637 1599 aaKnown RBP28.62■■■□□ 2.17
SNX17-210ENST00000537606 BAZ1BQ9UIG0 1483 aaKnown RBP28.52■■■□□ 2.16
SNX17-210ENST00000537606 ABCC8Q09428 1581 aa28.46■■■□□ 2.15
SNX17-210ENST00000537606 EHMT2Q96KQ7 1210 aa28.43■■■□□ 2.14
SNX17-210ENST00000537606 NCAPD3P42695 1498 aa28.23■■■□□ 2.11
SNX17-210ENST00000537606 HMGXB3Q12766 1538 aa28.14■■■□□ 2.09
SNX17-210ENST00000537606 WRNQ14191 1432 aaPredicted RBP eCLIP28.09■■■□□ 2.09
SNX17-210ENST00000537606 PCGF6Q9BYE7 350 aa28.09■■■□□ 2.09
SNX17-210ENST00000537606 SOGA1O94964 1423 aa28.05■■■□□ 2.08
SNX17-210ENST00000537606 SYNJ1O43426 1573 aa27.96■■■□□ 2.07
SNX17-210ENST00000537606 RUSC2Q8N2Y8 1516 aa27.96■■■□□ 2.07
SNX17-210ENST00000537606 CC2D2AQ9P2K1 1620 aa27.93■■■□□ 2.06
SNX17-210ENST00000537606 CSRNP3Q8WYN3 585 aa27.84■■■□□ 2.05
SNX17-210ENST00000537606 CFTRP13569 1480 aa27.78■■■□□ 2.04
SNX17-210ENST00000537606 EEA1Q15075 1411 aa27.76■■■□□ 2.03
SNX17-210ENST00000537606 HRCP23327 699 aa27.71■■■□□ 2.03
SNX17-210ENST00000537606 TOP2BQ02880 1626 aa27.68■■■□□ 2.02
SNX17-210ENST00000537606 UBTFP17480 764 aaKnown RBP27.67■■■□□ 2.02
SNX17-210ENST00000537606 TRIM26Q12899 539 aaPredicted RBP27.66■■■□□ 2.02
SNX17-210ENST00000537606 CADPSQ9ULU8 1353 aa27.64■■■□□ 2.02
SNX17-210ENST00000537606 CUX1P39880 1505 aa27.6■■■□□ 2.01
SNX17-210ENST00000537606 BIVM-ERCC5R4GMW8 1640 aa27.59■■■□□ 2.01
SNX17-210ENST00000537606 PPARGC1BQ86YN6 1023 aaKnown RBP27.58■■■□□ 2.01
SNX17-210ENST00000537606 TNIKQ9UKE5 1360 aa27.56■■■□□ 2
SNX17-210ENST00000537606 CEP162Q5TB80 1403 aa27.54■■■□□ 2
SNX17-210ENST00000537606 GOLGA3Q08378 1498 aa27.54■■■□□ 2
SNX17-210ENST00000537606 DNAJC5BQ9UF47 199 aa27.48■■□□□ 1.99
SNX17-210ENST00000537606 PRDM2Q13029 1718 aa27.47■■□□□ 1.99
SNX17-210ENST00000537606 CEP164Q9UPV0 1460 aa27.46■■□□□ 1.99
SNX17-210ENST00000537606 NESP48681 1621 aa27.41■■□□□ 1.98
SNX17-210ENST00000537606 KIF21BO75037 1637 aa27.4■■□□□ 1.98
SNX17-210ENST00000537606 RAPGEF2Q9Y4G8 1499 aa27.4■■□□□ 1.98
SNX17-210ENST00000537606 FANCD2Q9BXW9 1451 aa27.36■■□□□ 1.97
SNX17-210ENST00000537606 RANGAP1P46060 587 aaPredicted RBP27.33■■□□□ 1.97
SNX17-210ENST00000537606 KIF27Q86VH2 1401 aa27.3■■□□□ 1.96
SNX17-210ENST00000537606 TTBK1Q5TCY1 1321 aaPredicted RBP27.3■■□□□ 1.96
SNX17-210ENST00000537606 FGD5Q6ZNL6 1462 aa27.24■■□□□ 1.95
SNX17-210ENST00000537606 PRXQ9BXM0 1461 aa27.21■■□□□ 1.95
SNX17-210ENST00000537606 CLIP1P30622 1438 aa27.2■■□□□ 1.95
SNX17-210ENST00000537606 CUX2O14529 1486 aa27.2■■□□□ 1.94
SNX17-210ENST00000537606 LAMC3Q9Y6N6 1575 aa27.13■■□□□ 1.93
SNX17-210ENST00000537606 ERICH3Q5RHP9 1530 aa27.11■■□□□ 1.93
SNX17-210ENST00000537606 TOPBP1Q92547 1522 aa27.09■■□□□ 1.93
SNX17-210ENST00000537606 IGF1RP08069 1367 aa27.08■■□□□ 1.93
SNX17-210ENST00000537606 DNMBPQ6XZF7 1577 aa27.08■■□□□ 1.93
SNX17-210ENST00000537606 RAD54L2Q9Y4B4 1467 aa27.07■■□□□ 1.92
SNX17-210ENST00000537606 POLA1P09884 1462 aaPredicted RBP27.02■■□□□ 1.92
SNX17-210ENST00000537606 PDS5BQ9NTI5 1447 aa27■■□□□ 1.91
SNX17-210ENST00000537606 URB2Q14146 1524 aaKnown RBP26.99■■□□□ 1.91
SNX17-210ENST00000537606 VPS8Q8N3P4 1428 aa26.97■■□□□ 1.91
SNX17-210ENST00000537606 CARMIL1Q5VZK9 1371 aa26.96■■□□□ 1.91
SNX17-210ENST00000537606 KIF21AQ7Z4S6 1674 aa26.91■■□□□ 1.9
SNX17-210ENST00000537606 ABCA10Q8WWZ4 1543 aa26.9■■□□□ 1.9
SNX17-210ENST00000537606 APLP2Q06481 763 aa26.86■■□□□ 1.89
SNX17-210ENST00000537606 ARAP1Q96P48 1450 aa26.85■■□□□ 1.89
SNX17-210ENST00000537606 TDRD9Q8NDG6 1382 aaKnown RBP26.81■■□□□ 1.88
SNX17-210ENST00000537606 ARHGAP35Q9NRY4 1499 aa26.76■■□□□ 1.87
SNX17-210ENST00000537606 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.75■■□□□ 1.87
SNX17-210ENST00000537606 ZEB1P37275 1124 aaPredicted RBP26.74■■□□□ 1.87
SNX17-210ENST00000537606 WDR97A6NE52 1622 aa26.69■■□□□ 1.86
SNX17-210ENST00000537606 GAPVD1Q14C86 1478 aa26.65■■□□□ 1.86
SNX17-210ENST00000537606 P3H3Q8IVL6 736 aa26.65■■□□□ 1.86
SNX17-210ENST00000537606 KANK4Q5T7N3 995 aaPredicted RBP26.64■■□□□ 1.85
SNX17-210ENST00000537606 MRC2Q9UBG0 1479 aa26.62■■□□□ 1.85
SNX17-210ENST00000537606 ABCA5Q8WWZ7 1642 aa26.61■■□□□ 1.85
SNX17-210ENST00000537606 CCER1Q8TC90 406 aaPredicted RBP26.6■■□□□ 1.85
SNX17-210ENST00000537606 CUL7Q14999 1698 aa26.6■■□□□ 1.85
SNX17-210ENST00000537606 TARBP1Q13395 1621 aaKnown RBP26.58■■□□□ 1.85
SNX17-210ENST00000537606 HNRNPUL2Q1KMD3 747 aaKnown RBP26.58■■□□□ 1.85
SNX17-210ENST00000537606 AQRO60306 1485 aaKnown RBP eCLIP26.53■■□□□ 1.843e-7■■■■■ 31
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms