RNA–Protein interactions for RNA: ENST00000440760.5

SNX17-203, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,955 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-203ENST00000440760 NISCHQ9Y2I1 1504 aa43.68■■■■■ 4.58
SNX17-203ENST00000440760 CCDC180Q9P1Z9 1646 aa38.16■■■■□ 3.7
SNX17-203ENST00000440760 ZCCHC6Q5VYS8 1495 aaKnown RBP36.69■■■■□ 3.46
SNX17-203ENST00000440760 ABCC9O60706 1549 aa36.3■■■■□ 3.4
SNX17-203ENST00000440760 DCAF8L2P0C7V8 631 aa36.16■■■■□ 3.38
SNX17-203ENST00000440760 DCAF1Q9Y4B6 1507 aa36.03■■■■□ 3.36
SNX17-203ENST00000440760 SHROOM4Q9ULL8 1493 aa35.68■■■■□ 3.3
SNX17-203ENST00000440760 MYO15BQ96JP2 1530 aa35.63■■■■□ 3.29
SNX17-203ENST00000440760 NACADO15069 1562 aa35.53■■■■□ 3.28
SNX17-203ENST00000440760 RB1CC1Q8TDY2 1594 aa35.29■■■■□ 3.24
SNX17-203ENST00000440760 SCRIBQ14160 1630 aa35.19■■■■□ 3.22
SNX17-203ENST00000440760 UNC13AQ9UPW8 1703 aa34.72■■■■□ 3.15
SNX17-203ENST00000440760 BICRAQ9NZM4 1560 aa34.3■■■■□ 3.08
SNX17-203ENST00000440760 SUPT5HO00267 1087 aaKnown RBP34.18■■■■□ 3.06
SNX17-203ENST00000440760 PABPN1Q86U42 306 aaKnown RBP eCLIP34.18■■■■□ 3.06
SNX17-203ENST00000440760 CECR2Q9BXF3 1484 aa34.03■■■■□ 3.04
SNX17-203ENST00000440760 RSF1Q96T23 1441 aaPredicted RBP33.84■■■■□ 3.01
SNX17-203ENST00000440760 MROH2BQ7Z745 1585 aa33.81■■■■□ 3
SNX17-203ENST00000440760 BAZ1AQ9NRL2 1556 aaPredicted RBP33.73■■■□□ 2.99
SNX17-203ENST00000440760 SMARCA4P51532 1647 aa33.66■■■□□ 2.98
SNX17-203ENST00000440760 WIZO95785 1651 aa33.56■■■□□ 2.96
SNX17-203ENST00000440760 EIF4G1Q04637 1599 aaKnown RBP33.26■■■□□ 2.92
SNX17-203ENST00000440760 PEG3Q9GZU2 1588 aa33.18■■■□□ 2.9
SNX17-203ENST00000440760 TOP2AP11388 1531 aaKnown RBP33.13■■■□□ 2.89
SNX17-203ENST00000440760 ATAD2BQ9ULI0 1458 aa33.09■■■□□ 2.89
SNX17-203ENST00000440760 SMARCA2P51531 1590 aa33.04■■■□□ 2.88
SNX17-203ENST00000440760 BAZ1BQ9UIG0 1483 aaKnown RBP32.92■■■□□ 2.86
SNX17-203ENST00000440760 CC2D2AQ9P2K1 1620 aa32.83■■■□□ 2.85
SNX17-203ENST00000440760 CCDC88BA6NC98 1476 aa32.79■■■□□ 2.84
SNX17-203ENST00000440760 NCAPD3P42695 1498 aa32.77■■■□□ 2.84
SNX17-203ENST00000440760 HMGXB3Q12766 1538 aa32.77■■■□□ 2.84
SNX17-203ENST00000440760 CHIC1Q5VXU3 224 aa32.59■■■□□ 2.81
SNX17-203ENST00000440760 ABCC8Q09428 1581 aa32.16■■■□□ 2.74
SNX17-203ENST00000440760 DNAJC5BQ9UF47 199 aa32.11■■■□□ 2.73
SNX17-203ENST00000440760 TRIM41Q8WV44 630 aa32.07■■■□□ 2.72
SNX17-203ENST00000440760 CFTRP13569 1480 aa32.04■■■□□ 2.72
SNX17-203ENST00000440760 PRDM2Q13029 1718 aa31.96■■■□□ 2.71
SNX17-203ENST00000440760 CADPSQ9ULU8 1353 aa31.94■■■□□ 2.7
SNX17-203ENST00000440760 WRNQ14191 1432 aaPredicted RBP eCLIP31.86■■■□□ 2.69
SNX17-203ENST00000440760 NESP48681 1621 aa31.85■■■□□ 2.69
SNX17-203ENST00000440760 SYNJ1O43426 1573 aa31.82■■■□□ 2.68
SNX17-203ENST00000440760 LAMC3Q9Y6N6 1575 aa31.72■■■□□ 2.67
SNX17-203ENST00000440760 FANCD2Q9BXW9 1451 aa31.65■■■□□ 2.66
SNX17-203ENST00000440760 TOP2BQ02880 1626 aa31.63■■■□□ 2.65
SNX17-203ENST00000440760 CUX1P39880 1505 aa31.62■■■□□ 2.65
SNX17-203ENST00000440760 BIVM-ERCC5R4GMW8 1640 aa31.62■■■□□ 2.65
SNX17-203ENST00000440760 FAM9AQ8IZU1 332 aaPredicted RBP31.59■■■□□ 2.65
SNX17-203ENST00000440760 KIF21AQ7Z4S6 1674 aa31.48■■■□□ 2.63
SNX17-203ENST00000440760 SOGA1O94964 1423 aa31.47■■■□□ 2.63
SNX17-203ENST00000440760 CEP164Q9UPV0 1460 aa31.46■■■□□ 2.63
SNX17-203ENST00000440760 PDS5BQ9NTI5 1447 aa31.44■■■□□ 2.62
SNX17-203ENST00000440760 LOC105371045A0A1W2PR82 267 aa31.39■■■□□ 2.62
SNX17-203ENST00000440760 RUSC2Q8N2Y8 1516 aa31.39■■■□□ 2.62
SNX17-203ENST00000440760 DNMBPQ6XZF7 1577 aa31.34■■■□□ 2.61
SNX17-203ENST00000440760 TOPBP1Q92547 1522 aa31.3■■■□□ 2.6
SNX17-203ENST00000440760 URB2Q14146 1524 aaKnown RBP31.29■■■□□ 2.6
SNX17-203ENST00000440760 FGD5Q6ZNL6 1462 aa31.28■■■□□ 2.6
SNX17-203ENST00000440760 EHMT2Q96KQ7 1210 aa31.25■■■□□ 2.59
SNX17-203ENST00000440760 EEA1Q15075 1411 aa31.23■■■□□ 2.59
SNX17-203ENST00000440760 POLA1P09884 1462 aaPredicted RBP31.15■■■□□ 2.58
SNX17-203ENST00000440760 MRC2Q9UBG0 1479 aa31.11■■■□□ 2.57
SNX17-203ENST00000440760 CSRNP3Q8WYN3 585 aa31.1■■■□□ 2.57
SNX17-203ENST00000440760 ERCC6Q03468 1493 aa31.09■■■□□ 2.57
SNX17-203ENST00000440760 RAD54L2Q9Y4B4 1467 aa31.08■■■□□ 2.57
SNX17-203ENST00000440760 CUX2O14529 1486 aa31.04■■■□□ 2.56
SNX17-203ENST00000440760 KIF27Q86VH2 1401 aa31.02■■■□□ 2.56
SNX17-203ENST00000440760 WDR62O43379 1518 aa30.96■■■□□ 2.55
SNX17-203ENST00000440760 THOC2Q8NI27 1593 aaKnown RBP30.96■■■□□ 2.55
SNX17-203ENST00000440760 WDR97A6NE52 1622 aa30.96■■■□□ 2.55
SNX17-203ENST00000440760 ABCA10Q8WWZ4 1543 aa30.95■■■□□ 2.54
SNX17-203ENST00000440760 KIF21BO75037 1637 aa30.94■■■□□ 2.54
SNX17-203ENST00000440760 GOLGA3Q08378 1498 aa30.89■■■□□ 2.54
SNX17-203ENST00000440760 TARBP1Q13395 1621 aaKnown RBP30.86■■■□□ 2.53
SNX17-203ENST00000440760 RAPGEF2Q9Y4G8 1499 aa30.84■■■□□ 2.53
SNX17-203ENST00000440760 PRXQ9BXM0 1461 aa30.8■■■□□ 2.52
SNX17-203ENST00000440760 ABCA5Q8WWZ7 1642 aa30.78■■■□□ 2.52
SNX17-203ENST00000440760 IGF1RP08069 1367 aa30.76■■■□□ 2.52
SNX17-203ENST00000440760 TDRD9Q8NDG6 1382 aaKnown RBP30.76■■■□□ 2.51
SNX17-203ENST00000440760 UBTFP17480 764 aaKnown RBP30.74■■■□□ 2.51
SNX17-203ENST00000440760 ERICH3Q5RHP9 1530 aa30.73■■■□□ 2.51
SNX17-203ENST00000440760 TNIKQ9UKE5 1360 aa30.71■■■□□ 2.51
SNX17-203ENST00000440760 IFT140Q96RY7 1462 aa30.68■■■□□ 2.5
SNX17-203ENST00000440760 GAPVD1Q14C86 1478 aa30.66■■■□□ 2.5
SNX17-203ENST00000440760 CEP162Q5TB80 1403 aa30.63■■■□□ 2.49
SNX17-203ENST00000440760 ZNF608Q9ULD9 1512 aaPredicted RBP30.61■■■□□ 2.49
SNX17-203ENST00000440760 CARMIL1Q5VZK9 1371 aa30.61■■■□□ 2.49
SNX17-203ENST00000440760 PBRM1Q86U86 1689 aa30.6■■■□□ 2.49
SNX17-203ENST00000440760 AQRO60306 1485 aaKnown RBP eCLIP30.59■■■□□ 2.493e-7■■■■■ 31
SNX17-203ENST00000440760 CUL7Q14999 1698 aa30.59■■■□□ 2.49
SNX17-203ENST00000440760 EIF4G3O43432 1585 aaKnown RBP30.53■■■□□ 2.48
SNX17-203ENST00000440760 GRIN2BQ13224 1484 aa30.43■■■□□ 2.46
SNX17-203ENST00000440760 RANGAP1P46060 587 aaPredicted RBP30.42■■■□□ 2.46
SNX17-203ENST00000440760 ADAMTS12P58397 1594 aa30.39■■■□□ 2.46
SNX17-203ENST00000440760 CLIP1P30622 1438 aa30.39■■■□□ 2.46
SNX17-203ENST00000440760 SNAPC4Q5SXM2 1469 aa30.32■■■□□ 2.44
SNX17-203ENST00000440760 FHAD1B1AJZ9 1412 aa30.3■■■□□ 2.44
SNX17-203ENST00000440760 CTTNBP2Q8WZ74 1663 aa30.3■■■□□ 2.44
SNX17-203ENST00000440760 MAGI1Q96QZ7 1491 aaPredicted RBP30.18■■■□□ 2.42
SNX17-203ENST00000440760 ARAP1Q96P48 1450 aa30.17■■■□□ 2.42
SNX17-203ENST00000440760 ARHGAP35Q9NRY4 1499 aa30.16■■■□□ 2.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms