RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 NISCHQ9Y2I1 1504 aa36.34■■■■□ 3.41
SNX17-204ENST00000453453 CCDC180Q9P1Z9 1646 aa31.99■■■□□ 2.71
SNX17-204ENST00000453453 ZCCHC6Q5VYS8 1495 aaKnown RBP30.46■■■□□ 2.47
SNX17-204ENST00000453453 ABCC9O60706 1549 aa30.43■■■□□ 2.46
SNX17-204ENST00000453453 DCAF1Q9Y4B6 1507 aa30.11■■■□□ 2.41
SNX17-204ENST00000453453 DCAF8L2P0C7V8 631 aa30.06■■■□□ 2.4
SNX17-204ENST00000453453 MYO15BQ96JP2 1530 aa29.91■■■□□ 2.38
SNX17-204ENST00000453453 NACADO15069 1562 aa29.84■■■□□ 2.37
SNX17-204ENST00000453453 RB1CC1Q8TDY2 1594 aa29.69■■■□□ 2.34
SNX17-204ENST00000453453 SHROOM4Q9ULL8 1493 aa29.28■■■□□ 2.28
SNX17-204ENST00000453453 SCRIBQ14160 1630 aa29.26■■■□□ 2.27
SNX17-204ENST00000453453 UNC13AQ9UPW8 1703 aa29.03■■■□□ 2.24
SNX17-204ENST00000453453 BICRAQ9NZM4 1560 aa28.69■■■□□ 2.18
SNX17-204ENST00000453453 PABPN1Q86U42 306 aaKnown RBP eCLIP28.55■■■□□ 2.16
SNX17-204ENST00000453453 CECR2Q9BXF3 1484 aa28.18■■■□□ 2.1
SNX17-204ENST00000453453 BAZ1AQ9NRL2 1556 aaPredicted RBP28.14■■■□□ 2.1
SNX17-204ENST00000453453 SMARCA4P51532 1647 aa28.05■■■□□ 2.08
SNX17-204ENST00000453453 MROH2BQ7Z745 1585 aa28.02■■■□□ 2.08
SNX17-204ENST00000453453 SUPT5HO00267 1087 aaKnown RBP28■■■□□ 2.07
SNX17-204ENST00000453453 RSF1Q96T23 1441 aaPredicted RBP28■■■□□ 2.07
SNX17-204ENST00000453453 EIF4G1Q04637 1599 aaKnown RBP27.9■■■□□ 2.06
SNX17-204ENST00000453453 WIZO95785 1651 aa27.8■■■□□ 2.04
SNX17-204ENST00000453453 PEG3Q9GZU2 1588 aa27.72■■■□□ 2.03
SNX17-204ENST00000453453 SMARCA2P51531 1590 aa27.7■■■□□ 2.02
SNX17-204ENST00000453453 ATAD2BQ9ULI0 1458 aa27.63■■■□□ 2.01
SNX17-204ENST00000453453 CC2D2AQ9P2K1 1620 aa27.57■■■□□ 2
SNX17-204ENST00000453453 TOP2AP11388 1531 aaKnown RBP27.55■■■□□ 2
SNX17-204ENST00000453453 BAZ1BQ9UIG0 1483 aaKnown RBP27.51■■□□□ 1.99
SNX17-204ENST00000453453 NCAPD3P42695 1498 aa27.48■■□□□ 1.99
SNX17-204ENST00000453453 HMGXB3Q12766 1538 aa27.47■■□□□ 1.99
SNX17-204ENST00000453453 CCDC88BA6NC98 1476 aa27.19■■□□□ 1.94
SNX17-204ENST00000453453 DNAJC5BQ9UF47 199 aa27.12■■□□□ 1.93
SNX17-204ENST00000453453 CFTRP13569 1480 aa26.76■■□□□ 1.87
SNX17-204ENST00000453453 PRDM2Q13029 1718 aa26.75■■□□□ 1.87
SNX17-204ENST00000453453 CADPSQ9ULU8 1353 aa26.73■■□□□ 1.87
SNX17-204ENST00000453453 LAMC3Q9Y6N6 1575 aa26.67■■□□□ 1.86
SNX17-204ENST00000453453 CHIC1Q5VXU3 224 aa26.6■■□□□ 1.85
SNX17-204ENST00000453453 NESP48681 1621 aa26.56■■□□□ 1.84
SNX17-204ENST00000453453 ABCC8Q09428 1581 aa26.49■■□□□ 1.83
SNX17-204ENST00000453453 PDS5BQ9NTI5 1447 aa26.45■■□□□ 1.83
SNX17-204ENST00000453453 FANCD2Q9BXW9 1451 aa26.45■■□□□ 1.82
SNX17-204ENST00000453453 TRIM41Q8WV44 630 aa26.42■■□□□ 1.82
SNX17-204ENST00000453453 WRNQ14191 1432 aaPredicted RBP eCLIP26.42■■□□□ 1.82
SNX17-204ENST00000453453 CEP164Q9UPV0 1460 aa26.36■■□□□ 1.81
SNX17-204ENST00000453453 KIF21AQ7Z4S6 1674 aa26.35■■□□□ 1.81
SNX17-204ENST00000453453 SYNJ1O43426 1573 aa26.3■■□□□ 1.8
SNX17-204ENST00000453453 BIVM-ERCC5R4GMW8 1640 aa26.28■■□□□ 1.8
SNX17-204ENST00000453453 TOP2BQ02880 1626 aa26.27■■□□□ 1.8
SNX17-204ENST00000453453 CUX1P39880 1505 aa26.24■■□□□ 1.79
SNX17-204ENST00000453453 ERCC6Q03468 1493 aa26.21■■□□□ 1.79
SNX17-204ENST00000453453 DNMBPQ6XZF7 1577 aa26.2■■□□□ 1.78
SNX17-204ENST00000453453 MRC2Q9UBG0 1479 aa26.13■■□□□ 1.77
SNX17-204ENST00000453453 TOPBP1Q92547 1522 aa26.13■■□□□ 1.77
SNX17-204ENST00000453453 URB2Q14146 1524 aaKnown RBP26.12■■□□□ 1.77
SNX17-204ENST00000453453 FGD5Q6ZNL6 1462 aa26.04■■□□□ 1.76
SNX17-204ENST00000453453 THOC2Q8NI27 1593 aaKnown RBP26■■□□□ 1.75
SNX17-204ENST00000453453 WDR62O43379 1518 aa26■■□□□ 1.75
SNX17-204ENST00000453453 POLA1P09884 1462 aaPredicted RBP25.96■■□□□ 1.75
SNX17-204ENST00000453453 EEA1Q15075 1411 aa25.9■■□□□ 1.74
SNX17-204ENST00000453453 SOGA1O94964 1423 aa25.88■■□□□ 1.73
SNX17-204ENST00000453453 FAM9AQ8IZU1 332 aaPredicted RBP25.85■■□□□ 1.73
SNX17-204ENST00000453453 RAD54L2Q9Y4B4 1467 aa25.83■■□□□ 1.73
SNX17-204ENST00000453453 ABCA10Q8WWZ4 1543 aa25.81■■□□□ 1.72
SNX17-204ENST00000453453 KIF27Q86VH2 1401 aa25.81■■□□□ 1.72
SNX17-204ENST00000453453 WDR97A6NE52 1622 aa25.8■■□□□ 1.72
SNX17-204ENST00000453453 CUX2O14529 1486 aa25.8■■□□□ 1.72
SNX17-204ENST00000453453 RUSC2Q8N2Y8 1516 aa25.78■■□□□ 1.72
SNX17-204ENST00000453453 TARBP1Q13395 1621 aaKnown RBP25.77■■□□□ 1.72
SNX17-204ENST00000453453 IFT140Q96RY7 1462 aa25.76■■□□□ 1.71
SNX17-204ENST00000453453 CSRNP3Q8WYN3 585 aa25.7■■□□□ 1.71
SNX17-204ENST00000453453 ABCA5Q8WWZ7 1642 aa25.65■■□□□ 1.7
SNX17-204ENST00000453453 TDRD9Q8NDG6 1382 aaKnown RBP25.6■■□□□ 1.69
SNX17-204ENST00000453453 GAPVD1Q14C86 1478 aa25.6■■□□□ 1.69
SNX17-204ENST00000453453 KIF21BO75037 1637 aa25.57■■□□□ 1.68
SNX17-204ENST00000453453 PBRM1Q86U86 1689 aa25.55■■□□□ 1.68
SNX17-204ENST00000453453 ERICH3Q5RHP9 1530 aa25.54■■□□□ 1.68
SNX17-204ENST00000453453 EIF4G3O43432 1585 aaKnown RBP25.53■■□□□ 1.68
SNX17-204ENST00000453453 ZNF608Q9ULD9 1512 aaPredicted RBP25.53■■□□□ 1.68
SNX17-204ENST00000453453 IGF1RP08069 1367 aa25.53■■□□□ 1.68
SNX17-204ENST00000453453 CUL7Q14999 1698 aa25.52■■□□□ 1.68
SNX17-204ENST00000453453 AQRO60306 1485 aaKnown RBP eCLIP25.51■■□□□ 1.673e-7■■■■■ 31
SNX17-204ENST00000453453 LOC105371045A0A1W2PR82 267 aa25.51■■□□□ 1.67
SNX17-204ENST00000453453 GOLGA3Q08378 1498 aa25.5■■□□□ 1.67
SNX17-204ENST00000453453 PRXQ9BXM0 1461 aa25.49■■□□□ 1.67
SNX17-204ENST00000453453 GRIN2BQ13224 1484 aa25.47■■□□□ 1.67
SNX17-204ENST00000453453 EHMT2Q96KQ7 1210 aa25.45■■□□□ 1.67
SNX17-204ENST00000453453 CARMIL1Q5VZK9 1371 aa25.44■■□□□ 1.66
SNX17-204ENST00000453453 RAPGEF2Q9Y4G8 1499 aa25.41■■□□□ 1.66
SNX17-204ENST00000453453 HRCP23327 699 aa25.38■■□□□ 1.65
SNX17-204ENST00000453453 UBTFP17480 764 aaKnown RBP25.36■■□□□ 1.65
SNX17-204ENST00000453453 ADAMTS12P58397 1594 aa25.36■■□□□ 1.65
SNX17-204ENST00000453453 FHAD1B1AJZ9 1412 aa25.33■■□□□ 1.65
SNX17-204ENST00000453453 MAGI1Q96QZ7 1491 aaPredicted RBP25.33■■□□□ 1.64
SNX17-204ENST00000453453 SNAPC4Q5SXM2 1469 aa25.32■■□□□ 1.64
SNX17-204ENST00000453453 TNIKQ9UKE5 1360 aa25.3■■□□□ 1.64
SNX17-204ENST00000453453 SYNJ2O15056 1496 aa25.21■■□□□ 1.63
SNX17-204ENST00000453453 CTTNBP2Q8WZ74 1663 aa25.19■■□□□ 1.62
SNX17-204ENST00000453453 GRIN2AQ12879 1464 aa25.15■■□□□ 1.62
SNX17-204ENST00000453453 CHMP7Q8WUX9 453 aaPredicted RBP25.14■■□□□ 1.61
SNX17-204ENST00000453453 CEP162Q5TB80 1403 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms