Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC29.62■■■□□ 2.331e-7■■□□□ 13.5
NIP7Q9Y221 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.311e-7■■□□□ 13.5
NIP7Q9Y221 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.215e-6■■□□□ 13.5
NIP7Q9Y221 AJUBA-205ENST00000553736 751 ntTSL 226.54■■□□□ 1.845e-6■■□□□ 13.5
NIP7Q9Y221 AHNAK-208ENST00000533365 584 ntAPPRIS ALT2 TSL 524.72■■□□□ 1.555e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.435e-6■■□□□ 13.5
NIP7Q9Y221 SLC2A1-202ENST00000415851 578 ntTSL 223.61■■□□□ 1.371e-7■■□□□ 13.5
NIP7Q9Y221 SLC2A1-206ENST00000625233 1031 ntTSL 223.37■■□□□ 1.331e-7■■□□□ 13.5
NIP7Q9Y221 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC22.93■■□□□ 1.265e-6■■□□□ 13.5
NIP7Q9Y221 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.63■■□□□ 1.055e-6■■□□□ 13.5
NIP7Q9Y221 SLC2A1-201ENST00000372500 533 ntTSL 320.81■□□□□ 0.921e-7■■□□□ 13.5
NIP7Q9Y221 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.915e-6■■□□□ 13.5
NIP7Q9Y221 CRLF1-204ENST00000596360 413 ntTSL 220.73■□□□□ 0.911e-7■■□□□ 13.5
NIP7Q9Y221 SERPINF1-205ENST00000571360 478 ntTSL 320.56■□□□□ 0.882e-6■■□□□ 13.5
NIP7Q9Y221 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.785e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.755e-6■■□□□ 13.5
NIP7Q9Y221 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.75e-6■■□□□ 13.5
NIP7Q9Y221 SLC2A1-205ENST00000475162 598 ntTSL 518.78■□□□□ 0.61e-7■■□□□ 13.5
NIP7Q9Y221 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.585e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-205ENST00000572105 1168 ntTSL 517.99■□□□□ 0.475e-6■■□□□ 13.5
NIP7Q9Y221 SLC2A1-208ENST00000630287 2398 ntTSL 517.76■□□□□ 0.431e-7■■□□□ 13.5
NIP7Q9Y221 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.411e-7■■□□□ 13.5
NIP7Q9Y221 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.365e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-213ENST00000576214 1024 ntTSL 516.7■□□□□ 0.265e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-215ENST00000576917 1958 ntTSL 516.18■□□□□ 0.185e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-216ENST00000615544 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.145e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-214ENST00000576544 1720 ntTSL 515.82■□□□□ 0.125e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.095e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-212ENST00000576209 1698 ntTSL 1 (best)15.38■□□□□ 0.055e-6■■□□□ 13.5
NIP7Q9Y221 SREBF2-202ENST00000424354 5699 ntTSL 1 (best)15.31■□□□□ 0.045e-6■■□□□ 13.5
NIP7Q9Y221 ACTG1-207ENST00000574671 1678 ntTSL 1 (best)14.4□□□□□ -0.15e-6■■□□□ 13.5
NIP7Q9Y221 LRP1-207ENST00000554174 2175 ntTSL 1 (best) BASIC14.32□□□□□ -0.125e-6■■□□□ 13.5
NIP7Q9Y221 FLNB-203ENST00000419752 2002 ntTSL 5 BASIC14□□□□□ -0.171e-7■■□□□ 13.5
NIP7Q9Y221 SLC2A1-203ENST00000426263 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.241e-7■■□□□ 13.5
NIP7Q9Y221 AL132780.3-201ENST00000555074 835 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.255e-6■■□□□ 13.5
NIP7Q9Y221 LRP1-202ENST00000338962 2169 ntTSL 1 (best) BASIC13.38□□□□□ -0.275e-6■■□□□ 13.5
NIP7Q9Y221 DHFR-205ENST00000511032 1474 ntTSL 2 BASIC13.09□□□□□ -0.311e-7■■□□□ 13.5
NIP7Q9Y221 SELENOP-214ENST00000514985 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.375e-6■■□□□ 13.5
NIP7Q9Y221 FLNB-211ENST00000484981 932 ntTSL 512.57□□□□□ -0.41e-7■■□□□ 13.5
NIP7Q9Y221 PCK1-201ENST00000319441 4341 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.454e-6■■□□□ 13.5
NIP7Q9Y221 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.471e-7■■□□□ 13.5
NIP7Q9Y221 DHFR-202ENST00000504396 1447 ntTSL 2 BASIC12.09□□□□□ -0.471e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-204ENST00000429972 9430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.481e-7■■□□□ 13.5
NIP7Q9Y221 PCK1-202ENST00000467047 5074 ntTSL 1 (best)12.03□□□□□ -0.484e-6■■□□□ 13.5
NIP7Q9Y221 DHFR-206ENST00000513048 994 ntTSL 1 (best)11.63□□□□□ -0.551e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-202ENST00000358537 9391 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.571e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-210ENST00000481470 6497 ntTSL 1 (best)11.46□□□□□ -0.581e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-214ENST00000493452 7402 ntTSL 1 (best) BASIC10.96□□□□□ -0.661e-7■■□□□ 13.5
NIP7Q9Y221 FLNB-212ENST00000490882 8079 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.71e-7■■□□□ 13.5
NIP7Q9Y221 SELENOP-210ENST00000512980 4175 ntTSL 27.78□□□□□ -1.165e-6■■□□□ 13.5
NIP7Q9Y221 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.95□□□□□ -1.465e-6■■□□□ 13.5
NIP7Q9Y221 DHFR-204ENST00000508282 545 ntTSL 33.77□□□□□ -1.811e-7■■□□□ 13.5
NIP7Q9Y221 DHFR-207ENST00000513314 582 ntTSL 32.9□□□□□ -1.951e-7■■□□□ 13.5
NIP7Q9Y221 DDX39B-206ENST00000419338 928 ntTSL 518.81■□□□□ 0.65e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-208ENST00000428098 817 ntTSL 316.25■□□□□ 0.195e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-212ENST00000456662 932 ntTSL 516.25■□□□□ 0.195e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-210ENST00000431908 914 ntTSL 515.7■□□□□ 0.15e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-201ENST00000376177 1529 ntTSL 5 BASIC14.74□□□□□ -0.055e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-220ENST00000482195 1232 ntTSL 213.75□□□□□ -0.215e-52■■□□□ 13.4
NIP7Q9Y221 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.285e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.345e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-219ENST00000481456 5158 ntTSL 212.76□□□□□ -0.375e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.425e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-215ENST00000462256 4027 ntTSL 211.61□□□□□ -0.555e-52■■□□□ 13.4
NIP7Q9Y221 DDX39B-207ENST00000427214 1005 ntTSL 58.74□□□□□ -1.015e-52■■□□□ 13.4
NIP7Q9Y221 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC9.08□□□□□ -0.962e-44■■□□□ 13.4
NIP7Q9Y221 ALB-209ENST00000503124 1741 ntTSL 5 BASIC7.3□□□□□ -1.242e-44■■□□□ 13.4
NIP7Q9Y221 ALB-211ENST00000505649 1509 ntTSL 56.87□□□□□ -1.312e-44■■□□□ 13.4
NIP7Q9Y221 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.61□□□□□ -1.352e-44■■□□□ 13.4
NIP7Q9Y221 ALB-205ENST00000476441 1604 ntTSL 56.61□□□□□ -1.352e-44■■□□□ 13.4
NIP7Q9Y221 ALB-216ENST00000511370 1519 ntTSL 56.6□□□□□ -1.352e-44■■□□□ 13.4
NIP7Q9Y221 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.38□□□□□ -1.392e-44■■□□□ 13.4
NIP7Q9Y221 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.2□□□□□ -1.422e-44■■□□□ 13.4
NIP7Q9Y221 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.04□□□□□ -1.442e-44■■□□□ 13.4
NIP7Q9Y221 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.512e-44■■□□□ 13.4
NIP7Q9Y221 ALB-206ENST00000484992 693 ntTSL 23.06□□□□□ -1.922e-44■■□□□ 13.4
NIP7Q9Y221 RPS3-205ENST00000525933 1307 ntTSL 514.06□□□□□ -0.164e-58■■□□□ 13.4
NIP7Q9Y221 RPS3-204ENST00000525690 421 ntTSL 312.49□□□□□ -0.414e-58■■□□□ 13.4
NIP7Q9Y221 RPS3-215ENST00000530170 531 ntTSL 510.59□□□□□ -0.714e-58■■□□□ 13.4
NIP7Q9Y221 SNORD15B-201ENST00000384714 146 ntBASIC3.94□□□□□ -1.784e-58■■□□□ 13.4
NIP7Q9Y221 SNX5-206ENST00000469704 696 ntTSL 334.78■■■■□ 3.161e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.071e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-204ENST00000431277 840 ntTSL 520.74■□□□□ 0.911e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-203ENST00000419004 778 ntTSL 519.65■□□□□ 0.741e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-214ENST00000490175 2025 ntTSL 1 (best)19.08■□□□□ 0.641e-323■■□□□ 13.3
NIP7Q9Y221 OVOL2-204ENST00000486776 550 ntTSL 318.37■□□□□ 0.531e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.531e-323■■□□□ 13.3
NIP7Q9Y221 SNORD17-201ENST00000390930 237 ntBASIC4.5□□□□□ -1.691e-323■■□□□ 13.3
NIP7Q9Y221 SNX5-207ENST00000474883 695 ntTSL 54.36□□□□□ -1.711e-323■■□□□ 13.3
NIP7Q9Y221 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.561e-8■■□□□ 13
NIP7Q9Y221 LRP5-206ENST00000529993 5103 ntTSL 1 (best)17.25■□□□□ 0.351e-8■■□□□ 13
NIP7Q9Y221 TAF1D-207ENST00000527169 1127 ntTSL 522.47■■□□□ 1.192e-50■■□□□ 13
NIP7Q9Y221 TAF1D-205ENST00000526015 1735 ntTSL 1 (best)21.12■□□□□ 0.972e-50■■□□□ 13
NIP7Q9Y221 TAF1D-201ENST00000323981 2540 ntTSL 215.54■□□□□ 0.082e-50■■□□□ 13
NIP7Q9Y221 TAF1D-204ENST00000525928 1710 ntTSL 29.16□□□□□ -0.942e-50■■□□□ 13
NIP7Q9Y221 TAF1D-222ENST00000546088 1728 ntTSL 38.26□□□□□ -1.092e-50■■□□□ 13
NIP7Q9Y221 TAF1D-210ENST00000529435 1011 ntTSL 57.25□□□□□ -1.252e-50■■□□□ 13
NIP7Q9Y221 TAF1D-215ENST00000530769 4358 ntTSL 25.93□□□□□ -1.462e-50■■□□□ 13
NIP7Q9Y221 TAF1D-214ENST00000530089 1429 ntTSL 33.83□□□□□ -1.82e-50■■□□□ 13
NIP7Q9Y221 TAF1D-212ENST00000529794 1123 ntTSL 23.51□□□□□ -1.852e-50■■□□□ 13
Retrieved 100 of 1,619 protein–RNA pairs in 69.7 ms