Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC23.35■■□□□ 1.33
CPSF4LA6NMK7 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
CPSF4LA6NMK7 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 AC135983.2-203ENST00000454486 1613 ntBASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CPSF4LA6NMK7 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CPSF4LA6NMK7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.33■■□□□ 1.33
CPSF4LA6NMK7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CPSF4LA6NMK7 AP002414.2-202ENST00000590929 1450 ntBASIC23.32■■□□□ 1.32
CPSF4LA6NMK7 EI24-212ENST00000615917 1407 ntTSL 2 BASIC23.32■■□□□ 1.32
CPSF4LA6NMK7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CPSF4LA6NMK7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
CPSF4LA6NMK7 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 MEST-211ENST00000437945 1455 ntTSL 5 BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 WHAMMP2-203ENST00000563942 1603 ntBASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 MIR3665-201ENST00000578708 105 ntBASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC23.31■■□□□ 1.32
CPSF4LA6NMK7 SHF-208ENST00000560734 1731 ntTSL 3 BASIC23.3■■□□□ 1.32
CPSF4LA6NMK7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CPSF4LA6NMK7 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC23.3■■□□□ 1.32
CPSF4LA6NMK7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CPSF4LA6NMK7 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CPSF4LA6NMK7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CPSF4LA6NMK7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC23.26■■□□□ 1.31
CPSF4LA6NMK7 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC23.26■■□□□ 1.31
CPSF4LA6NMK7 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC23.26■■□□□ 1.31
CPSF4LA6NMK7 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.26■■□□□ 1.31
CPSF4LA6NMK7 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 LINC00273-201ENST00000539813 1452 ntBASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC23.25■■□□□ 1.31
CPSF4LA6NMK7 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 AP006261.1-201ENST00000584783 668 ntBASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
CPSF4LA6NMK7 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CPSF4LA6NMK7 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CPSF4LA6NMK7 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC23.22■■□□□ 1.31
CPSF4LA6NMK7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC23.21■■□□□ 1.31
CPSF4LA6NMK7 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4LA6NMK7 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4LA6NMK7 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CPSF4LA6NMK7 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC23.19■■□□□ 1.3
CPSF4LA6NMK7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CPSF4LA6NMK7 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CPSF4LA6NMK7 CIB2-204ENST00000557846 934 ntTSL 3 BASIC23.18■■□□□ 1.3
CPSF4LA6NMK7 NRG1-221ENST00000614767 762 ntTSL 5 BASIC23.18■■□□□ 1.3
CPSF4LA6NMK7 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 AC087741.3-201ENST00000624270 1347 ntBASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC23.17■■□□□ 1.3
CPSF4LA6NMK7 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CPSF4LA6NMK7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 AL162393.1-201ENST00000437852 946 ntBASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 AC018358.1-201ENST00000631079 1402 ntBASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC23.15■■□□□ 1.3
CPSF4LA6NMK7 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC23.14■■□□□ 1.3
CPSF4LA6NMK7 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC23.14■■□□□ 1.29
CPSF4LA6NMK7 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CPSF4LA6NMK7 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.13■■□□□ 1.29
CPSF4LA6NMK7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms