Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.39■□□□□ 0.218e-7■■□□□ 14.4
YBX3P16989 ZMIZ1-202ENST00000446377 6686 ntTSL 5 BASIC13.16□□□□□ -0.38e-7■■□□□ 14.4
YBX3P16989 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.522e-7■■□□□ 14.4
YBX3P16989 ARID1A-212ENST00000636219 7058 ntAPPRIS ALT2 TSL 511.23□□□□□ -0.612e-7■■□□□ 14.4
YBX3P16989 PRC1-206ENST00000555455 830 ntTSL 316.19■□□□□ 0.181e-28■■□□□ 14.4
YBX3P16989 PRC1-201ENST00000361188 4087 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.451e-28■■□□□ 14.4
YBX3P16989 PRC1-202ENST00000394249 3034 ntTSL 1 (best) BASIC11.49□□□□□ -0.571e-28■■□□□ 14.4
YBX3P16989 PRC1-210ENST00000556972 728 ntTSL 59.55□□□□□ -0.881e-28■■□□□ 14.4
YBX3P16989 ZNF197-206ENST00000412641 546 ntTSL 216.24■□□□□ 0.191e-8■■□□□ 14.4
YBX3P16989 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.13■□□□□ 0.171e-8■■□□□ 14.4
YBX3P16989 ZNF197-204ENST00000383745 2935 ntTSL 1 (best) BASIC13.43□□□□□ -0.261e-8■■□□□ 14.4
YBX3P16989 ZNF197-201ENST00000334075 2320 ntTSL 1 (best)13.33□□□□□ -0.281e-8■■□□□ 14.4
YBX3P16989 ZNF197-202ENST00000344387 3275 ntAPPRIS P1 TSL 1 (best) BASIC10.89□□□□□ -0.671e-8■■□□□ 14.4
YBX3P16989 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC24.64■■□□□ 1.532e-6■■□□□ 14.4
YBX3P16989 DAXX-207ENST00000468536 817 ntTSL 219.22■□□□□ 0.673e-6■■□□□ 14.4
YBX3P16989 PSME1-209ENST00000561142 865 ntTSL 518.45■□□□□ 0.542e-6■■□□□ 14.4
YBX3P16989 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC17.93■□□□□ 0.462e-6■■□□□ 14.4
YBX3P16989 CDK16-214ENST00000520141 498 ntTSL 317.93■□□□□ 0.462e-6■■□□□ 14.4
YBX3P16989 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.74■□□□□ 0.432e-6■■□□□ 14.4
YBX3P16989 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.93■□□□□ 0.32e-6■■□□□ 14.4
YBX3P16989 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.133e-6■■□□□ 14.4
YBX3P16989 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC15.61■□□□□ 0.093e-6■■□□□ 14.4
YBX3P16989 CDK16-206ENST00000462827 664 ntTSL 514.97□□□□□ -0.012e-6■■□□□ 14.4
YBX3P16989 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.062e-6■■□□□ 14.4
YBX3P16989 CDK16-207ENST00000493213 866 ntTSL 314.28□□□□□ -0.122e-6■■□□□ 14.4
YBX3P16989 HTRA2-207ENST00000482205 564 ntTSL 214.09□□□□□ -0.151e-10■■□□□ 14.4
YBX3P16989 DAXX-202ENST00000374542 2613 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.183e-6■■□□□ 14.4
YBX3P16989 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.213e-6■■□□□ 14.4
YBX3P16989 HTRA2-205ENST00000465521 745 ntTSL 213.28□□□□□ -0.281e-10■■□□□ 14.4
YBX3P16989 PPHLN1-205ENST00000395568 2170 ntTSL 1 (best) BASIC11.95□□□□□ -0.52e-6■■□□□ 14.4
YBX3P16989 PPHLN1-224ENST00000613154 1863 ntAPPRIS ALT1 TSL 5 BASIC11.6□□□□□ -0.552e-6■■□□□ 14.4
YBX3P16989 PPHLN1-203ENST00000337898 1465 ntTSL 2 BASIC11.19□□□□□ -0.622e-6■■□□□ 14.4
YBX3P16989 DAXX-208ENST00000477162 847 ntTSL 510.37□□□□□ -0.753e-6■■□□□ 14.4
YBX3P16989 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC9.57□□□□□ -0.882e-6■■□□□ 14.4
YBX3P16989 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC7.21□□□□□ -1.252e-6■■□□□ 14.4
YBX3P16989 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC7.18□□□□□ -1.262e-6■■□□□ 14.4
YBX3P16989 MTPN-201ENST00000393085 3738 ntAPPRIS P1 TSL 1 (best) BASIC8.32□□□□□ -1.082e-16■■□□□ 14.4
YBX3P16989 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC24.93■■□□□ 1.582e-7■■□□□ 14.4
YBX3P16989 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC23.47■■□□□ 1.352e-7■■□□□ 14.4
YBX3P16989 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.182e-7■■□□□ 14.4
YBX3P16989 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.982e-7■■□□□ 14.4
YBX3P16989 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.97■□□□□ 0.792e-7■■□□□ 14.4
YBX3P16989 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.722e-7■■□□□ 14.4
YBX3P16989 ABHD14B-207ENST00000487005 1998 ntTSL 219.01■□□□□ 0.632e-7■■□□□ 14.4
YBX3P16989 PCBP4-213ENST00000489595 539 ntTSL 416.68■□□□□ 0.262e-7■■□□□ 14.4
YBX3P16989 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.15■□□□□ 0.182e-7■■□□□ 14.4
YBX3P16989 DANCR-205ENST00000623036 748 ntTSL 5 BASIC15.09■□□□□ 0.011e-6■■□□□ 14.4
YBX3P16989 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC27.33■■□□□ 1.971e-8■■□□□ 14.4
YBX3P16989 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC25.91■■□□□ 1.741e-8■■□□□ 14.4
YBX3P16989 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC22.22■■□□□ 1.151e-8■■□□□ 14.4
YBX3P16989 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC21.22■□□□□ 0.991e-8■■□□□ 14.4
YBX3P16989 CAPZB-207ENST00000459967 579 ntTSL 319.7■□□□□ 0.741e-8■■□□□ 14.4
YBX3P16989 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.711e-8■■□□□ 14.4
YBX3P16989 COPS6-204ENST00000426712 716 ntTSL 312.33□□□□□ -0.447e-7■■□□□ 14.4
YBX3P16989 SMAD6-202ENST00000557916 1401 ntTSL 1 (best)32.32■■■□□ 2.767e-7■■□□□ 14.4
YBX3P16989 SMAD6-204ENST00000559931 573 ntTSL 317.79■□□□□ 0.447e-7■■□□□ 14.4
YBX3P16989 MPI-217ENST00000567177 1068 ntTSL 320.46■□□□□ 0.873e-6■■□□□ 14.4
YBX3P16989 UBB-208ENST00000578706 500 ntTSL 39.46□□□□□ -0.91e-36■■□□□ 14.4
YBX3P16989 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.68■■□□□ 1.221e-6■■□□□ 14.4
YBX3P16989 STAG2-215ENST00000469481 989 ntTSL 319.78■□□□□ 0.766e-8■■□□□ 14.4
YBX3P16989 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.66e-8■■□□□ 14.4
YBX3P16989 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.646e-8■■□□□ 14.4
YBX3P16989 PTDSS1-205ENST00000518776 766 ntTSL 312.09□□□□□ -0.471e-8■■□□□ 14.4
YBX3P16989 TRAPPC1-205ENST00000572656 409 ntTSL 213.74□□□□□ -0.214e-7■■□□□ 14.4
YBX3P16989 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.172e-6■■□□□ 14.4
YBX3P16989 EPB41L1-212ENST00000441639 5967 ntTSL 5 BASIC12.66□□□□□ -0.382e-6■■□□□ 14.4
YBX3P16989 EPB41L1-205ENST00000373946 6327 ntAPPRIS ALT1 TSL 1 (best) BASIC11.02□□□□□ -0.642e-6■■□□□ 14.4
YBX3P16989 VTI1B-201ENST00000216456 1103 ntTSL 1 (best)30.06■■■□□ 2.41e-6■■□□□ 14.4
YBX3P16989 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.141e-6■■□□□ 14.4
YBX3P16989 ATP5A1-205ENST00000586592 2214 ntTSL 224.17■■□□□ 1.463e-10■■□□□ 14.4
YBX3P16989 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC23.37■■□□□ 1.333e-10■■□□□ 14.4
YBX3P16989 ATP5A1-211ENST00000590156 1931 ntTSL 218.06■□□□□ 0.483e-10■■□□□ 14.4
YBX3P16989 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.453e-10■■□□□ 14.4
YBX3P16989 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC17.59■□□□□ 0.413e-10■■□□□ 14.4
YBX3P16989 ATP5A1-202ENST00000398752 5818 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.763e-10■■□□□ 14.4
YBX3P16989 SEC13-218ENST00000490283 740 ntTSL 223.07■■□□□ 1.282e-11■■□□□ 14.4
YBX3P16989 SEC13-215ENST00000477547 1313 ntTSL 219.73■□□□□ 0.759e-10■■□□□ 14.4
YBX3P16989 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.689e-10■■□□□ 14.4
YBX3P16989 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC19.05■□□□□ 0.649e-10■■□□□ 14.4
YBX3P16989 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC17.69■□□□□ 0.429e-10■■□□□ 14.4
YBX3P16989 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.419e-10■■□□□ 14.4
YBX3P16989 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC15.13■□□□□ 0.019e-10■■□□□ 14.4
YBX3P16989 SEC13-214ENST00000476597 614 ntTSL 214.5□□□□□ -0.092e-11■■□□□ 14.4
YBX3P16989 SEC13-216ENST00000479868 2374 ntTSL 1 (best)13.98□□□□□ -0.178e-12■■□□□ 14.4
YBX3P16989 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.375e-9■■□□□ 14.4
YBX3P16989 GTF3A-202ENST00000419181 1191 ntTSL 1 (best)26.68■■□□□ 1.862e-8■■□□□ 14.4
YBX3P16989 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.562e-8■■□□□ 14.4
YBX3P16989 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.252e-8■■□□□ 14.4
YBX3P16989 C1QBP-203ENST00000573204 911 ntTSL 212.46□□□□□ -0.416e-10■■□□□ 14.4
YBX3P16989 C1QBP-205ENST00000573421 330 ntTSL 23.74□□□□□ -1.816e-10■■□□□ 14.4
YBX3P16989 HDLBP-234ENST00000471294 490 ntTSL 414.61□□□□□ -0.072e-8■■□□□ 14.4
YBX3P16989 HDLBP-228ENST00000459788 563 ntTSL 213.33□□□□□ -0.282e-8■■□□□ 14.4
YBX3P16989 KARS-204ENST00000564578 1942 ntTSL 515.62■□□□□ 0.095e-8■■□□□ 14.4
YBX3P16989 KARS-209ENST00000568378 459 ntTSL 5 BASIC14.21□□□□□ -0.135e-8■■□□□ 14.4
YBX3P16989 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC14.2□□□□□ -0.145e-8■■□□□ 14.4
YBX3P16989 KARS-202ENST00000319410 2421 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.435e-8■■□□□ 14.4
YBX3P16989 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.042e-7■■□□□ 14.4
YBX3P16989 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.282e-7■■□□□ 14.4
YBX3P16989 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.372e-7■■□□□ 14.4
YBX3P16989 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.528e-7■■□□□ 14.4
Retrieved 100 of 29,075 protein–RNA pairs in 545.8 ms