RNA–Protein interactions for RNA: ENST00000397109.7

SEC13-208, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best) BASIC

Gene SEC13, Length 1,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-208ENST00000397109 NISCHQ9Y2I1 1504 aa35.54■■■■□ 3.28
SEC13-208ENST00000397109 CCDC180Q9P1Z9 1646 aa31.66■■■□□ 2.66
SEC13-208ENST00000397109 ABCC9O60706 1549 aa31.14■■■□□ 2.58
SEC13-208ENST00000397109 RB1CC1Q8TDY2 1594 aa29.91■■■□□ 2.38
SEC13-208ENST00000397109 NACADO15069 1562 aa29.84■■■□□ 2.37
SEC13-208ENST00000397109 DCAF8L2P0C7V8 631 aa29.8■■■□□ 2.36
SEC13-208ENST00000397109 MYO15BQ96JP2 1530 aa29.62■■■□□ 2.33
SEC13-208ENST00000397109 ZCCHC6Q5VYS8 1495 aaKnown RBP29.54■■■□□ 2.32
SEC13-208ENST00000397109 DCAF1Q9Y4B6 1507 aa29.41■■■□□ 2.3
SEC13-208ENST00000397109 UNC13AQ9UPW8 1703 aa29.16■■■□□ 2.26
SEC13-208ENST00000397109 PABPN1Q86U42 306 aaKnown RBP eCLIP29.09■■■□□ 2.25
SEC13-208ENST00000397109 BICRAQ9NZM4 1560 aa28.96■■■□□ 2.23
SEC13-208ENST00000397109 SCRIBQ14160 1630 aa28.84■■■□□ 2.21
SEC13-208ENST00000397109 DNAJC5BQ9UF47 199 aa28.74■■■□□ 2.19
SEC13-208ENST00000397109 SHROOM4Q9ULL8 1493 aa28.72■■■□□ 2.19
SEC13-208ENST00000397109 EIF4G1Q04637 1599 aaKnown RBP28.23■■■□□ 2.11
SEC13-208ENST00000397109 CC2D2AQ9P2K1 1620 aa28.15■■■□□ 2.1
SEC13-208ENST00000397109 CECR2Q9BXF3 1484 aa28.02■■■□□ 2.08
SEC13-208ENST00000397109 SMARCA4P51532 1647 aa27.59■■■□□ 2.01
SEC13-208ENST00000397109 BAZ1AQ9NRL2 1556 aaPredicted RBP27.56■■■□□ 2
SEC13-208ENST00000397109 NCAPD3P42695 1498 aa27.54■■■□□ 2
SEC13-208ENST00000397109 ATAD2BQ9ULI0 1458 aa27.51■■□□□ 1.99
SEC13-208ENST00000397109 SMARCA2P51531 1590 aa27.49■■□□□ 1.99
SEC13-208ENST00000397109 HMGXB3Q12766 1538 aa27.37■■□□□ 1.97
SEC13-208ENST00000397109 MROH2BQ7Z745 1585 aa27.35■■□□□ 1.97
SEC13-208ENST00000397109 PEG3Q9GZU2 1588 aa27.34■■□□□ 1.97
SEC13-208ENST00000397109 BAZ1BQ9UIG0 1483 aaKnown RBP27.27■■□□□ 1.96
SEC13-208ENST00000397109 WIZO95785 1651 aa27.04■■□□□ 1.92
SEC13-208ENST00000397109 RSF1Q96T23 1441 aaPredicted RBP27■■□□□ 1.91
SEC13-208ENST00000397109 ERCC6Q03468 1493 aa26.89■■□□□ 1.9
SEC13-208ENST00000397109 NESP48681 1621 aa26.87■■□□□ 1.89
SEC13-208ENST00000397109 LAMC3Q9Y6N6 1575 aa26.84■■□□□ 1.89
SEC13-208ENST00000397109 TOP2AP11388 1531 aaKnown RBP26.77■■□□□ 1.88
SEC13-208ENST00000397109 CADPSQ9ULU8 1353 aa26.74■■□□□ 1.87
SEC13-208ENST00000397109 PDS5BQ9NTI5 1447 aa26.7■■□□□ 1.86
SEC13-208ENST00000397109 CUX2O14529 1486 aa26.68■■□□□ 1.86
SEC13-208ENST00000397109 KIF21AQ7Z4S6 1674 aa26.54■■□□□ 1.84
SEC13-208ENST00000397109 CFTRP13569 1480 aa26.53■■□□□ 1.84
SEC13-208ENST00000397109 THOC2Q8NI27 1593 aaKnown RBP26.5■■□□□ 1.83
SEC13-208ENST00000397109 CCDC88BA6NC98 1476 aa26.47■■□□□ 1.83
SEC13-208ENST00000397109 FANCD2Q9BXW9 1451 aa26.41■■□□□ 1.82
SEC13-208ENST00000397109 CEP164Q9UPV0 1460 aa26.4■■□□□ 1.82
SEC13-208ENST00000397109 MRC2Q9UBG0 1479 aa26.39■■□□□ 1.82
SEC13-208ENST00000397109 WDR62O43379 1518 aa26.29■■□□□ 1.8
SEC13-208ENST00000397109 PRDM2Q13029 1718 aa26.27■■□□□ 1.8
SEC13-208ENST00000397109 SUPT5HO00267 1087 aaKnown RBP26.2■■□□□ 1.78
SEC13-208ENST00000397109 URB2Q14146 1524 aaKnown RBP26.13■■□□□ 1.77
SEC13-208ENST00000397109 DNAJC5Q9H3Z4 198 aa26.1■■□□□ 1.77
SEC13-208ENST00000397109 ABCC8Q09428 1581 aa26■■□□□ 1.75
SEC13-208ENST00000397109 TOPBP1Q92547 1522 aa25.95■■□□□ 1.75
SEC13-208ENST00000397109 DNMBPQ6XZF7 1577 aa25.91■■□□□ 1.74
SEC13-208ENST00000397109 IFT140Q96RY7 1462 aa25.87■■□□□ 1.73
SEC13-208ENST00000397109 POLA1P09884 1462 aaPredicted RBP25.72■■□□□ 1.71
SEC13-208ENST00000397109 ZNF608Q9ULD9 1512 aaPredicted RBP25.71■■□□□ 1.71
SEC13-208ENST00000397109 CUX1P39880 1505 aa25.67■■□□□ 1.7
SEC13-208ENST00000397109 TARBP1Q13395 1621 aaKnown RBP25.66■■□□□ 1.7
SEC13-208ENST00000397109 SOGA1O94964 1423 aa25.65■■□□□ 1.7
SEC13-208ENST00000397109 FGD5Q6ZNL6 1462 aa25.63■■□□□ 1.69
SEC13-208ENST00000397109 RAD54L2Q9Y4B4 1467 aa25.6■■□□□ 1.69
SEC13-208ENST00000397109 EIF4G3O43432 1585 aaKnown RBP25.59■■□□□ 1.69
SEC13-208ENST00000397109 OSCARQ8IYS5 282 aa25.59■■□□□ 1.69
SEC13-208ENST00000397109 AQRO60306 1485 aaKnown RBP eCLIP25.57■■□□□ 1.682e-7■■■■□ 26.6
SEC13-208ENST00000397109 WDR97A6NE52 1622 aa25.51■■□□□ 1.67
SEC13-208ENST00000397109 TDRD9Q8NDG6 1382 aaKnown RBP25.51■■□□□ 1.67
SEC13-208ENST00000397109 WRNQ14191 1432 aaPredicted RBP eCLIP25.48■■□□□ 1.67
SEC13-208ENST00000397109 TOP2BQ02880 1626 aa25.42■■□□□ 1.66
SEC13-208ENST00000397109 BIVM-ERCC5R4GMW8 1640 aa25.41■■□□□ 1.66
SEC13-208ENST00000397109 ABCA10Q8WWZ4 1543 aa25.4■■□□□ 1.66
SEC13-208ENST00000397109 GRIN2BQ13224 1484 aa25.37■■□□□ 1.65
SEC13-208ENST00000397109 SYNJ1O43426 1573 aa25.37■■□□□ 1.65
SEC13-208ENST00000397109 GAPVD1Q14C86 1478 aa25.34■■□□□ 1.65
SEC13-208ENST00000397109 FBLN2P98095 1184 aa25.34■■□□□ 1.65
SEC13-208ENST00000397109 SNAPC4Q5SXM2 1469 aa25.32■■□□□ 1.64
SEC13-208ENST00000397109 MAGI1Q96QZ7 1491 aaPredicted RBP25.32■■□□□ 1.64
SEC13-208ENST00000397109 CHD1O14646 1710 aa25.3■■□□□ 1.64
SEC13-208ENST00000397109 ABCA5Q8WWZ7 1642 aa25.26■■□□□ 1.63
SEC13-208ENST00000397109 CHMP7Q8WUX9 453 aaPredicted RBP25.26■■□□□ 1.63
SEC13-208ENST00000397109 PBRM1Q86U86 1689 aa25.24■■□□□ 1.63
SEC13-208ENST00000397109 SYNJ2O15056 1496 aa25.21■■□□□ 1.63
SEC13-208ENST00000397109 TRIM41Q8WV44 630 aa25.13■■□□□ 1.61
SEC13-208ENST00000397109 RIMBP3CA6NJZ7 1639 aa25.1■■□□□ 1.61
SEC13-208ENST00000397109 RIMBP3BA6NNM3 1639 aa25.1■■□□□ 1.61
SEC13-208ENST00000397109 RIMBP3Q9UFD9 1639 aa25.1■■□□□ 1.61
SEC13-208ENST00000397109 ARHGEF11O15085 1522 aa25.09■■□□□ 1.61
SEC13-208ENST00000397109 ERICH3Q5RHP9 1530 aa25.09■■□□□ 1.61
SEC13-208ENST00000397109 FHAD1B1AJZ9 1412 aa25.05■■□□□ 1.6
SEC13-208ENST00000397109 ADAMTS12P58397 1594 aa25.04■■□□□ 1.6
SEC13-208ENST00000397109 CLASP1Q7Z460 1538 aa25.04■■□□□ 1.6
SEC13-208ENST00000397109 GRIN2AQ12879 1464 aa25.02■■□□□ 1.6
SEC13-208ENST00000397109 KIF27Q86VH2 1401 aa24.98■■□□□ 1.59
SEC13-208ENST00000397109 CYB5RLQ6IPT4 315 aa24.92■■□□□ 1.58
SEC13-208ENST00000397109 NUP160Q12769 1436 aa24.92■■□□□ 1.58
SEC13-208ENST00000397109 IGF1RP08069 1367 aa24.9■■□□□ 1.58
SEC13-208ENST00000397109 ARAP1Q96P48 1450 aa24.88■■□□□ 1.57
SEC13-208ENST00000397109 CEP170Q5SW79 1584 aa24.87■■□□□ 1.57
SEC13-208ENST00000397109 CUL7Q14999 1698 aa24.81■■□□□ 1.56
SEC13-208ENST00000397109 CARMIL1Q5VZK9 1371 aa24.76■■□□□ 1.55
SEC13-208ENST00000397109 SHROOM2Q13796 1616 aa24.72■■□□□ 1.55
SEC13-208ENST00000397109 JPH4Q96JJ6 628 aa24.71■■□□□ 1.55
SEC13-208ENST00000397109 RUSC2Q8N2Y8 1516 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms