RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 NISCHQ9Y2I1 1504 aa31.59■■■□□ 2.65
GTF3A-209ENST00000640289 CCDC180Q9P1Z9 1646 aa27.89■■■□□ 2.06
GTF3A-209ENST00000640289 ABCC9O60706 1549 aa27.16■■□□□ 1.94
GTF3A-209ENST00000640289 ZCCHC6Q5VYS8 1495 aaKnown RBP26.38■■□□□ 1.81
GTF3A-209ENST00000640289 DCAF8L2P0C7V8 631 aa26.37■■□□□ 1.81
GTF3A-209ENST00000640289 NACADO15069 1562 aa26.19■■□□□ 1.78
GTF3A-209ENST00000640289 RB1CC1Q8TDY2 1594 aa26.16■■□□□ 1.78
GTF3A-209ENST00000640289 MYO15BQ96JP2 1530 aa26.11■■□□□ 1.77
GTF3A-209ENST00000640289 DCAF1Q9Y4B6 1507 aa26.1■■□□□ 1.77
GTF3A-209ENST00000640289 SCRIBQ14160 1630 aa25.57■■□□□ 1.68
GTF3A-209ENST00000640289 UNC13AQ9UPW8 1703 aa25.55■■□□□ 1.68
GTF3A-209ENST00000640289 PABPN1Q86U42 306 aaKnown RBP eCLIP25.47■■□□□ 1.67
GTF3A-209ENST00000640289 BICRAQ9NZM4 1560 aa25.4■■□□□ 1.66
GTF3A-209ENST00000640289 SHROOM4Q9ULL8 1493 aa25.22■■□□□ 1.63
GTF3A-209ENST00000640289 DNAJC5BQ9UF47 199 aa24.73■■□□□ 1.55
GTF3A-209ENST00000640289 EIF4G1Q04637 1599 aaKnown RBP24.71■■□□□ 1.55
GTF3A-209ENST00000640289 CECR2Q9BXF3 1484 aa24.64■■□□□ 1.54
GTF3A-209ENST00000640289 CC2D2AQ9P2K1 1620 aa24.54■■□□□ 1.52
GTF3A-209ENST00000640289 SMARCA4P51532 1647 aa24.45■■□□□ 1.5
GTF3A-209ENST00000640289 BAZ1AQ9NRL2 1556 aaPredicted RBP24.45■■□□□ 1.5
GTF3A-209ENST00000640289 MROH2BQ7Z745 1585 aa24.39■■□□□ 1.5
GTF3A-209ENST00000640289 ATAD2BQ9ULI0 1458 aa24.27■■□□□ 1.48
GTF3A-209ENST00000640289 SMARCA2P51531 1590 aa24.21■■□□□ 1.47
GTF3A-209ENST00000640289 RSF1Q96T23 1441 aaPredicted RBP24.2■■□□□ 1.46
GTF3A-209ENST00000640289 NCAPD3P42695 1498 aa24.19■■□□□ 1.46
GTF3A-209ENST00000640289 PEG3Q9GZU2 1588 aa24.18■■□□□ 1.46
GTF3A-209ENST00000640289 WIZO95785 1651 aa24.12■■□□□ 1.45
GTF3A-209ENST00000640289 HMGXB3Q12766 1538 aa24.09■■□□□ 1.45
GTF3A-209ENST00000640289 BAZ1BQ9UIG0 1483 aaKnown RBP24.08■■□□□ 1.45
GTF3A-209ENST00000640289 TOP2AP11388 1531 aaKnown RBP23.86■■□□□ 1.41
GTF3A-209ENST00000640289 SUPT5HO00267 1087 aaKnown RBP23.85■■□□□ 1.41
GTF3A-209ENST00000640289 CCDC88BA6NC98 1476 aa23.62■■□□□ 1.37
GTF3A-209ENST00000640289 NESP48681 1621 aa23.6■■□□□ 1.37
GTF3A-209ENST00000640289 CADPSQ9ULU8 1353 aa23.52■■□□□ 1.36
GTF3A-209ENST00000640289 LAMC3Q9Y6N6 1575 aa23.49■■□□□ 1.35
GTF3A-209ENST00000640289 CFTRP13569 1480 aa23.43■■□□□ 1.34
GTF3A-209ENST00000640289 ERCC6Q03468 1493 aa23.36■■□□□ 1.33
GTF3A-209ENST00000640289 PDS5BQ9NTI5 1447 aa23.34■■□□□ 1.33
GTF3A-209ENST00000640289 FANCD2Q9BXW9 1451 aa23.26■■□□□ 1.31
GTF3A-209ENST00000640289 KIF21AQ7Z4S6 1674 aa23.25■■□□□ 1.31
GTF3A-209ENST00000640289 CEP164Q9UPV0 1460 aa23.18■■□□□ 1.3
GTF3A-209ENST00000640289 PRDM2Q13029 1718 aa23.18■■□□□ 1.3
GTF3A-209ENST00000640289 THOC2Q8NI27 1593 aaKnown RBP23.13■■□□□ 1.29
GTF3A-209ENST00000640289 MRC2Q9UBG0 1479 aa23.11■■□□□ 1.29
GTF3A-209ENST00000640289 URB2Q14146 1524 aaKnown RBP23.03■■□□□ 1.28
GTF3A-209ENST00000640289 WDR62O43379 1518 aa23.01■■□□□ 1.27
GTF3A-209ENST00000640289 CUX2O14529 1486 aa22.98■■□□□ 1.27
GTF3A-209ENST00000640289 TOPBP1Q92547 1522 aa22.92■■□□□ 1.26
GTF3A-209ENST00000640289 DNMBPQ6XZF7 1577 aa22.89■■□□□ 1.26
GTF3A-209ENST00000640289 ABCC8Q09428 1581 aa22.86■■□□□ 1.25
GTF3A-209ENST00000640289 CUX1P39880 1505 aa22.85■■□□□ 1.25
GTF3A-209ENST00000640289 WRNQ14191 1432 aaPredicted RBP eCLIP22.81■■□□□ 1.24
GTF3A-209ENST00000640289 POLA1P09884 1462 aaPredicted RBP22.74■■□□□ 1.23
GTF3A-209ENST00000640289 SYNJ1O43426 1573 aa22.74■■□□□ 1.23
GTF3A-209ENST00000640289 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
GTF3A-209ENST00000640289 TOP2BQ02880 1626 aa22.69■■□□□ 1.22
GTF3A-209ENST00000640289 IFT140Q96RY7 1462 aa22.69■■□□□ 1.22
GTF3A-209ENST00000640289 RAD54L2Q9Y4B4 1467 aa22.68■■□□□ 1.22
GTF3A-209ENST00000640289 BIVM-ERCC5R4GMW8 1640 aa22.67■■□□□ 1.22
GTF3A-209ENST00000640289 SOGA1O94964 1423 aa22.65■■□□□ 1.22
GTF3A-209ENST00000640289 TARBP1Q13395 1621 aaKnown RBP22.62■■□□□ 1.21
GTF3A-209ENST00000640289 ZNF608Q9ULD9 1512 aaPredicted RBP22.62■■□□□ 1.21
GTF3A-209ENST00000640289 TDRD9Q8NDG6 1382 aaKnown RBP22.53■■□□□ 1.2
GTF3A-209ENST00000640289 AQRO60306 1485 aaKnown RBP eCLIP22.53■■□□□ 1.26e-7■■■■□ 20.5
GTF3A-209ENST00000640289 ABCA10Q8WWZ4 1543 aa22.51■■□□□ 1.19
GTF3A-209ENST00000640289 EIF4G3O43432 1585 aaKnown RBP22.49■■□□□ 1.19
GTF3A-209ENST00000640289 WDR97A6NE52 1622 aa22.49■■□□□ 1.19
GTF3A-209ENST00000640289 TRIM41Q8WV44 630 aa22.47■■□□□ 1.19
GTF3A-209ENST00000640289 CHIC1Q5VXU3 224 aa22.4■■□□□ 1.18
GTF3A-209ENST00000640289 GAPVD1Q14C86 1478 aa22.39■■□□□ 1.17
GTF3A-209ENST00000640289 ABCA5Q8WWZ7 1642 aa22.38■■□□□ 1.17
GTF3A-209ENST00000640289 GRIN2BQ13224 1484 aa22.34■■□□□ 1.17
GTF3A-209ENST00000640289 SNAPC4Q5SXM2 1469 aa22.3■■□□□ 1.16
GTF3A-209ENST00000640289 KIF27Q86VH2 1401 aa22.29■■□□□ 1.16
GTF3A-209ENST00000640289 PBRM1Q86U86 1689 aa22.28■■□□□ 1.16
GTF3A-209ENST00000640289 RUSC2Q8N2Y8 1516 aa22.24■■□□□ 1.15
GTF3A-209ENST00000640289 MAGI1Q96QZ7 1491 aaPredicted RBP22.23■■□□□ 1.15
GTF3A-209ENST00000640289 ERICH3Q5RHP9 1530 aa22.22■■□□□ 1.15
GTF3A-209ENST00000640289 FBLN2P98095 1184 aa22.21■■□□□ 1.15
GTF3A-209ENST00000640289 IGF1RP08069 1367 aa22.2■■□□□ 1.14
GTF3A-209ENST00000640289 SYNJ2O15056 1496 aa22.16■■□□□ 1.14
GTF3A-209ENST00000640289 CHMP7Q8WUX9 453 aaPredicted RBP22.16■■□□□ 1.14
GTF3A-209ENST00000640289 ADAMTS12P58397 1594 aa22.16■■□□□ 1.14
GTF3A-209ENST00000640289 FHAD1B1AJZ9 1412 aa22.14■■□□□ 1.13
GTF3A-209ENST00000640289 CHD1O14646 1710 aa22.13■■□□□ 1.13
GTF3A-209ENST00000640289 OSCARQ8IYS5 282 aa22.12■■□□□ 1.13
GTF3A-209ENST00000640289 CARMIL1Q5VZK9 1371 aa22.07■■□□□ 1.12
GTF3A-209ENST00000640289 GRIN2AQ12879 1464 aa22.06■■□□□ 1.12
GTF3A-209ENST00000640289 FAM9AQ8IZU1 332 aaPredicted RBP22.05■■□□□ 1.12
GTF3A-209ENST00000640289 CUL7Q14999 1698 aa22.04■■□□□ 1.12
GTF3A-209ENST00000640289 EEA1Q15075 1411 aa22.01■■□□□ 1.11
GTF3A-209ENST00000640289 DNAJC5Q9H3Z4 198 aa22.01■■□□□ 1.11
GTF3A-209ENST00000640289 CSRNP3Q8WYN3 585 aa22■■□□□ 1.11
GTF3A-209ENST00000640289 NUP160Q12769 1436 aa21.96■■□□□ 1.11
GTF3A-209ENST00000640289 CEP170Q5SW79 1584 aa21.95■■□□□ 1.11
GTF3A-209ENST00000640289 RAPGEF2Q9Y4G8 1499 aa21.95■■□□□ 1.1
GTF3A-209ENST00000640289 PRXQ9BXM0 1461 aa21.94■■□□□ 1.1
GTF3A-209ENST00000640289 CLASP1Q7Z460 1538 aa21.92■■□□□ 1.1
GTF3A-209ENST00000640289 KIAA0586Q9BVV6 1533 aa21.8■■□□□ 1.08
GTF3A-209ENST00000640289 EHMT2Q96KQ7 1210 aa21.79■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms