RNA–Protein interactions for RNA: ENST00000397117.5

SEC13-209, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 5 BASIC

Gene SEC13, Length 1,603 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-209ENST00000397117 NISCHQ9Y2I1 1504 aa31.95■■■□□ 2.7
SEC13-209ENST00000397117 ABCC9O60706 1549 aa28.98■■■□□ 2.23
SEC13-209ENST00000397117 CCDC180Q9P1Z9 1646 aa28.77■■■□□ 2.2
SEC13-209ENST00000397117 RB1CC1Q8TDY2 1594 aa27.49■■□□□ 1.99
SEC13-209ENST00000397117 DNAJC5BQ9UF47 199 aa27.49■■□□□ 1.99
SEC13-209ENST00000397117 NACADO15069 1562 aa27.25■■□□□ 1.95
SEC13-209ENST00000397117 DCAF8L2P0C7V8 631 aa27.02■■□□□ 1.92
SEC13-209ENST00000397117 PABPN1Q86U42 306 aaKnown RBP eCLIP26.96■■□□□ 1.91
SEC13-209ENST00000397117 UNC13AQ9UPW8 1703 aa26.92■■□□□ 1.9
SEC13-209ENST00000397117 MYO15BQ96JP2 1530 aa26.82■■□□□ 1.88
SEC13-209ENST00000397117 BICRAQ9NZM4 1560 aa26.74■■□□□ 1.87
SEC13-209ENST00000397117 ZCCHC6Q5VYS8 1495 aaKnown RBP26.4■■□□□ 1.82
SEC13-209ENST00000397117 DCAF1Q9Y4B6 1507 aa26.38■■□□□ 1.81
SEC13-209ENST00000397117 SHROOM4Q9ULL8 1493 aa26.32■■□□□ 1.8
SEC13-209ENST00000397117 CC2D2AQ9P2K1 1620 aa26.19■■□□□ 1.78
SEC13-209ENST00000397117 SCRIBQ14160 1630 aa26.16■■□□□ 1.78
SEC13-209ENST00000397117 CECR2Q9BXF3 1484 aa26.14■■□□□ 1.77
SEC13-209ENST00000397117 EIF4G1Q04637 1599 aaKnown RBP26.07■■□□□ 1.76
SEC13-209ENST00000397117 DNAJC5Q9H3Z4 198 aa25.41■■□□□ 1.66
SEC13-209ENST00000397117 NCAPD3P42695 1498 aa25.19■■□□□ 1.62
SEC13-209ENST00000397117 CUX2O14529 1486 aa25.09■■□□□ 1.61
SEC13-209ENST00000397117 ATAD2BQ9ULI0 1458 aa25.05■■□□□ 1.6
SEC13-209ENST00000397117 ERCC6Q03468 1493 aa25.01■■□□□ 1.59
SEC13-209ENST00000397117 SMARCA4P51532 1647 aa24.96■■□□□ 1.59
SEC13-209ENST00000397117 SMARCA2P51531 1590 aa24.96■■□□□ 1.59
SEC13-209ENST00000397117 HMGXB3Q12766 1538 aa24.95■■□□□ 1.58
SEC13-209ENST00000397117 NESP48681 1621 aa24.85■■□□□ 1.57
SEC13-209ENST00000397117 BAZ1AQ9NRL2 1556 aaPredicted RBP24.79■■□□□ 1.56
SEC13-209ENST00000397117 BAZ1BQ9UIG0 1483 aaKnown RBP24.77■■□□□ 1.56
SEC13-209ENST00000397117 PEG3Q9GZU2 1588 aa24.74■■□□□ 1.55
SEC13-209ENST00000397117 THOC2Q8NI27 1593 aaKnown RBP24.64■■□□□ 1.53
SEC13-209ENST00000397117 LAMC3Q9Y6N6 1575 aa24.63■■□□□ 1.53
SEC13-209ENST00000397117 MROH2BQ7Z745 1585 aa24.61■■□□□ 1.53
SEC13-209ENST00000397117 KIF21AQ7Z4S6 1674 aa24.52■■□□□ 1.52
SEC13-209ENST00000397117 PDS5BQ9NTI5 1447 aa24.49■■□□□ 1.51
SEC13-209ENST00000397117 CADPSQ9ULU8 1353 aa24.39■■□□□ 1.49
SEC13-209ENST00000397117 WIZO95785 1651 aa24.3■■□□□ 1.48
SEC13-209ENST00000397117 MRC2Q9UBG0 1479 aa24.29■■□□□ 1.48
SEC13-209ENST00000397117 WDR62O43379 1518 aa24.25■■□□□ 1.47
SEC13-209ENST00000397117 CEP164Q9UPV0 1460 aa24.13■■□□□ 1.45
SEC13-209ENST00000397117 TRIM41Q8WV44 630 aa24.12■■□□□ 1.45
SEC13-209ENST00000397117 FANCD2Q9BXW9 1451 aa24.09■■□□□ 1.45
SEC13-209ENST00000397117 CFTRP13569 1480 aa24.06■■□□□ 1.44
SEC13-209ENST00000397117 RSF1Q96T23 1441 aaPredicted RBP24.02■■□□□ 1.44
SEC13-209ENST00000397117 TOP2AP11388 1531 aaKnown RBP23.96■■□□□ 1.43
SEC13-209ENST00000397117 URB2Q14146 1524 aaKnown RBP23.93■■□□□ 1.42
SEC13-209ENST00000397117 OSCARQ8IYS5 282 aa23.92■■□□□ 1.42
SEC13-209ENST00000397117 PRDM2Q13029 1718 aa23.81■■□□□ 1.4
SEC13-209ENST00000397117 CCDC88BA6NC98 1476 aa23.72■■□□□ 1.39
SEC13-209ENST00000397117 IFT140Q96RY7 1462 aa23.68■■□□□ 1.38
SEC13-209ENST00000397117 ZNF608Q9ULD9 1512 aaPredicted RBP23.67■■□□□ 1.38
SEC13-209ENST00000397117 RIMBP3CA6NJZ7 1639 aa23.63■■□□□ 1.37
SEC13-209ENST00000397117 RIMBP3BA6NNM3 1639 aa23.63■■□□□ 1.37
SEC13-209ENST00000397117 RIMBP3Q9UFD9 1639 aa23.63■■□□□ 1.37
SEC13-209ENST00000397117 TOPBP1Q92547 1522 aa23.62■■□□□ 1.37
SEC13-209ENST00000397117 ABCC8Q09428 1581 aa23.56■■□□□ 1.36
SEC13-209ENST00000397117 ARHGEF11O15085 1522 aa23.52■■□□□ 1.36
SEC13-209ENST00000397117 SUPT5HO00267 1087 aaKnown RBP23.51■■□□□ 1.35
SEC13-209ENST00000397117 EIF4G3O43432 1585 aaKnown RBP23.51■■□□□ 1.35
SEC13-209ENST00000397117 DNMBPQ6XZF7 1577 aa23.51■■□□□ 1.35
SEC13-209ENST00000397117 TARBP1Q13395 1621 aaKnown RBP23.46■■□□□ 1.35
SEC13-209ENST00000397117 AQRO60306 1485 aaKnown RBP eCLIP23.43■■□□□ 1.342e-7■■■■□ 26.2
SEC13-209ENST00000397117 CHD1O14646 1710 aa23.41■■□□□ 1.34
SEC13-209ENST00000397117 CYB5RLQ6IPT4 315 aa23.37■■□□□ 1.33
SEC13-209ENST00000397117 POLA1P09884 1462 aaPredicted RBP23.36■■□□□ 1.33
SEC13-209ENST00000397117 RAD54L2Q9Y4B4 1467 aa23.28■■□□□ 1.32
SEC13-209ENST00000397117 FBLN2P98095 1184 aa23.28■■□□□ 1.32
SEC13-209ENST00000397117 ARAP1Q96P48 1450 aa23.28■■□□□ 1.32
SEC13-209ENST00000397117 SOGA1O94964 1423 aa23.26■■□□□ 1.31
SEC13-209ENST00000397117 TDRD9Q8NDG6 1382 aaKnown RBP23.24■■□□□ 1.31
SEC13-209ENST00000397117 WDR97A6NE52 1622 aa23.18■■□□□ 1.3
SEC13-209ENST00000397117 FGD5Q6ZNL6 1462 aa23.18■■□□□ 1.3
SEC13-209ENST00000397117 SNAPC4Q5SXM2 1469 aa23.15■■□□□ 1.3
SEC13-209ENST00000397117 TRHP20396 242 aaPredicted RBP23.15■■□□□ 1.3
SEC13-209ENST00000397117 CUX1P39880 1505 aa23.13■■□□□ 1.29
SEC13-209ENST00000397117 CLASP1Q7Z460 1538 aa23.13■■□□□ 1.29
SEC13-209ENST00000397117 MAGI1Q96QZ7 1491 aaPredicted RBP23.1■■□□□ 1.29
SEC13-209ENST00000397117 CHMP7Q8WUX9 453 aaPredicted RBP23.09■■□□□ 1.29
SEC13-209ENST00000397117 GRIN2BQ13224 1484 aa23.07■■□□□ 1.28
SEC13-209ENST00000397117 SYNJ1O43426 1573 aa23.07■■□□□ 1.28
SEC13-209ENST00000397117 SYNJ2O15056 1496 aa23.03■■□□□ 1.28
SEC13-209ENST00000397117 PBRM1Q86U86 1689 aa22.97■■□□□ 1.27
SEC13-209ENST00000397117 GAPVD1Q14C86 1478 aa22.96■■□□□ 1.27
SEC13-209ENST00000397117 ABCA10Q8WWZ4 1543 aa22.91■■□□□ 1.26
SEC13-209ENST00000397117 ABCA5Q8WWZ7 1642 aa22.9■■□□□ 1.26
SEC13-209ENST00000397117 GRIN2AQ12879 1464 aa22.77■■□□□ 1.24
SEC13-209ENST00000397117 ERCC6L2Q5T890 1561 aa22.76■■□□□ 1.23
SEC13-209ENST00000397117 WRNQ14191 1432 aaPredicted RBP eCLIP22.75■■□□□ 1.23
SEC13-209ENST00000397117 ADAMTS12P58397 1594 aa22.73■■□□□ 1.23
SEC13-209ENST00000397117 NUP160Q12769 1436 aa22.72■■□□□ 1.23
SEC13-209ENST00000397117 CEP170Q5SW79 1584 aa22.71■■□□□ 1.23
SEC13-209ENST00000397117 BIVM-ERCC5R4GMW8 1640 aa22.7■■□□□ 1.23
SEC13-209ENST00000397117 TOP2BQ02880 1626 aa22.69■■□□□ 1.22
SEC13-209ENST00000397117 SHROOM2Q13796 1616 aa22.67■■□□□ 1.22
SEC13-209ENST00000397117 FHAD1B1AJZ9 1412 aa22.66■■□□□ 1.22
SEC13-209ENST00000397117 AEBP2Q6ZN18 517 aaPredicted RBP22.65■■□□□ 1.22
SEC13-209ENST00000397117 ERICH3Q5RHP9 1530 aa22.61■■□□□ 1.21
SEC13-209ENST00000397117 PRG4Q92954 1404 aaPredicted RBP22.51■■□□□ 1.19
SEC13-209ENST00000397117 KIF13AQ9H1H9 1805 aa22.51■■□□□ 1.19
SEC13-209ENST00000397117 JPH4Q96JJ6 628 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms