RNA–Protein interactions for RNA: ENST00000564578.5

KARS-204, Transcript of lysyl-tRNA synthetase, humanhuman

TSL 5

Gene KARS, Length 1,942 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KARS-204ENST00000564578 NISCHQ9Y2I1 1504 aa29.8■■■□□ 2.36
KARS-204ENST00000564578 CCDC180Q9P1Z9 1646 aa26.28■■□□□ 1.8
KARS-204ENST00000564578 ABCC9O60706 1549 aa25.5■■□□□ 1.67
KARS-204ENST00000564578 ZCCHC6Q5VYS8 1495 aaKnown RBP24.89■■□□□ 1.57
KARS-204ENST00000564578 DCAF8L2P0C7V8 631 aa24.79■■□□□ 1.56
KARS-204ENST00000564578 NACADO15069 1562 aa24.66■■□□□ 1.54
KARS-204ENST00000564578 DCAF1Q9Y4B6 1507 aa24.65■■□□□ 1.54
KARS-204ENST00000564578 MYO15BQ96JP2 1530 aa24.64■■□□□ 1.54
KARS-204ENST00000564578 RB1CC1Q8TDY2 1594 aa24.61■■□□□ 1.53
KARS-204ENST00000564578 UNC13AQ9UPW8 1703 aa24.07■■□□□ 1.44
KARS-204ENST00000564578 SCRIBQ14160 1630 aa24.05■■□□□ 1.44
KARS-204ENST00000564578 BICRAQ9NZM4 1560 aa23.92■■□□□ 1.42
KARS-204ENST00000564578 PABPN1Q86U42 306 aaKnown RBP eCLIP23.92■■□□□ 1.42
KARS-204ENST00000564578 SHROOM4Q9ULL8 1493 aa23.76■■□□□ 1.39
KARS-204ENST00000564578 EIF4G1Q04637 1599 aaKnown RBP23.24■■□□□ 1.31
KARS-204ENST00000564578 CECR2Q9BXF3 1484 aa23.23■■□□□ 1.31
KARS-204ENST00000564578 DNAJC5BQ9UF47 199 aa23.22■■□□□ 1.31
KARS-204ENST00000564578 CC2D2AQ9P2K1 1620 aa23.06■■□□□ 1.28
KARS-204ENST00000564578 BAZ1AQ9NRL2 1556 aaPredicted RBP23.04■■□□□ 1.28
KARS-204ENST00000564578 SMARCA4P51532 1647 aa23.03■■□□□ 1.28
KARS-204ENST00000564578 MROH2BQ7Z745 1585 aa23■■□□□ 1.27
KARS-204ENST00000564578 ATAD2BQ9ULI0 1458 aa22.87■■□□□ 1.25
KARS-204ENST00000564578 RSF1Q96T23 1441 aaPredicted RBP22.86■■□□□ 1.25
KARS-204ENST00000564578 PEG3Q9GZU2 1588 aa22.82■■□□□ 1.24
KARS-204ENST00000564578 NCAPD3P42695 1498 aa22.81■■□□□ 1.24
KARS-204ENST00000564578 SMARCA2P51531 1590 aa22.8■■□□□ 1.24
KARS-204ENST00000564578 WIZO95785 1651 aa22.74■■□□□ 1.23
KARS-204ENST00000564578 HMGXB3Q12766 1538 aa22.68■■□□□ 1.22
KARS-204ENST00000564578 BAZ1BQ9UIG0 1483 aaKnown RBP22.66■■□□□ 1.22
KARS-204ENST00000564578 SUPT5HO00267 1087 aaKnown RBP22.51■■□□□ 1.19
KARS-204ENST00000564578 TOP2AP11388 1531 aaKnown RBP22.49■■□□□ 1.19
KARS-204ENST00000564578 CCDC88BA6NC98 1476 aa22.27■■□□□ 1.16
KARS-204ENST00000564578 NESP48681 1621 aa22.19■■□□□ 1.14
KARS-204ENST00000564578 CADPSQ9ULU8 1353 aa22.16■■□□□ 1.14
KARS-204ENST00000564578 LAMC3Q9Y6N6 1575 aa22.1■■□□□ 1.13
KARS-204ENST00000564578 CFTRP13569 1480 aa22.1■■□□□ 1.13
KARS-204ENST00000564578 PDS5BQ9NTI5 1447 aa21.96■■□□□ 1.11
KARS-204ENST00000564578 ERCC6Q03468 1493 aa21.91■■□□□ 1.1
KARS-204ENST00000564578 FANCD2Q9BXW9 1451 aa21.89■■□□□ 1.09
KARS-204ENST00000564578 KIF21AQ7Z4S6 1674 aa21.86■■□□□ 1.09
KARS-204ENST00000564578 PRDM2Q13029 1718 aa21.84■■□□□ 1.09
KARS-204ENST00000564578 CEP164Q9UPV0 1460 aa21.81■■□□□ 1.08
KARS-204ENST00000564578 THOC2Q8NI27 1593 aaKnown RBP21.72■■□□□ 1.07
KARS-204ENST00000564578 MRC2Q9UBG0 1479 aa21.71■■□□□ 1.07
KARS-204ENST00000564578 URB2Q14146 1524 aaKnown RBP21.67■■□□□ 1.06
KARS-204ENST00000564578 WDR62O43379 1518 aa21.64■■□□□ 1.05
KARS-204ENST00000564578 TOPBP1Q92547 1522 aa21.57■■□□□ 1.04
KARS-204ENST00000564578 CUX2O14529 1486 aa21.56■■□□□ 1.04
KARS-204ENST00000564578 ABCC8Q09428 1581 aa21.55■■□□□ 1.04
KARS-204ENST00000564578 CUX1P39880 1505 aa21.55■■□□□ 1.04
KARS-204ENST00000564578 DNMBPQ6XZF7 1577 aa21.54■■□□□ 1.04
KARS-204ENST00000564578 WRNQ14191 1432 aaPredicted RBP eCLIP21.51■■□□□ 1.03
KARS-204ENST00000564578 SYNJ1O43426 1573 aa21.44■■□□□ 1.02
KARS-204ENST00000564578 POLA1P09884 1462 aaPredicted RBP21.42■■□□□ 1.02
KARS-204ENST00000564578 TOP2BQ02880 1626 aa21.41■■□□□ 1.02
KARS-204ENST00000564578 FGD5Q6ZNL6 1462 aa21.41■■□□□ 1.02
KARS-204ENST00000564578 BIVM-ERCC5R4GMW8 1640 aa21.38■■□□□ 1.01
KARS-204ENST00000564578 RAD54L2Q9Y4B4 1467 aa21.34■■□□□ 1.01
KARS-204ENST00000564578 SOGA1O94964 1423 aa21.34■■□□□ 1.01
KARS-204ENST00000564578 IFT140Q96RY7 1462 aa21.34■■□□□ 1.01
KARS-204ENST00000564578 TARBP1Q13395 1621 aaKnown RBP21.32■■□□□ 1
KARS-204ENST00000564578 ZNF608Q9ULD9 1512 aaPredicted RBP21.28■■□□□ 1
KARS-204ENST00000564578 TRIM41Q8WV44 630 aa21.22■□□□□ 0.99
KARS-204ENST00000564578 CHIC1Q5VXU3 224 aa21.21■□□□□ 0.99
KARS-204ENST00000564578 ABCA10Q8WWZ4 1543 aa21.21■□□□□ 0.99
KARS-204ENST00000564578 TDRD9Q8NDG6 1382 aaKnown RBP21.21■□□□□ 0.99
KARS-204ENST00000564578 AQRO60306 1485 aaKnown RBP eCLIP21.19■□□□□ 0.981e-6■■■■□ 19.3
KARS-204ENST00000564578 WDR97A6NE52 1622 aa21.18■□□□□ 0.98
KARS-204ENST00000564578 EIF4G3O43432 1585 aaKnown RBP21.14■□□□□ 0.97
KARS-204ENST00000564578 GAPVD1Q14C86 1478 aa21.09■□□□□ 0.97
KARS-204ENST00000564578 ABCA5Q8WWZ7 1642 aa21.08■□□□□ 0.97
KARS-204ENST00000564578 GRIN2BQ13224 1484 aa21.03■□□□□ 0.96
KARS-204ENST00000564578 KIF27Q86VH2 1401 aa21.02■□□□□ 0.96
KARS-204ENST00000564578 RUSC2Q8N2Y8 1516 aa21■□□□□ 0.95
KARS-204ENST00000564578 SNAPC4Q5SXM2 1469 aa20.97■□□□□ 0.95
KARS-204ENST00000564578 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
KARS-204ENST00000564578 IGF1RP08069 1367 aa20.96■□□□□ 0.95
KARS-204ENST00000564578 ERICH3Q5RHP9 1530 aa20.94■□□□□ 0.94
KARS-204ENST00000564578 MAGI1Q96QZ7 1491 aaPredicted RBP20.93■□□□□ 0.94
KARS-204ENST00000564578 SYNJ2O15056 1496 aa20.86■□□□□ 0.93
KARS-204ENST00000564578 FBLN2P98095 1184 aa20.85■□□□□ 0.93
KARS-204ENST00000564578 FHAD1B1AJZ9 1412 aa20.85■□□□□ 0.93
KARS-204ENST00000564578 ADAMTS12P58397 1594 aa20.85■□□□□ 0.93
KARS-204ENST00000564578 CHMP7Q8WUX9 453 aaPredicted RBP20.84■□□□□ 0.93
KARS-204ENST00000564578 CARMIL1Q5VZK9 1371 aa20.8■□□□□ 0.92
KARS-204ENST00000564578 EEA1Q15075 1411 aa20.8■□□□□ 0.92
KARS-204ENST00000564578 FAM9AQ8IZU1 332 aaPredicted RBP20.8■□□□□ 0.92
KARS-204ENST00000564578 CHD1O14646 1710 aa20.8■□□□□ 0.92
KARS-204ENST00000564578 CSRNP3Q8WYN3 585 aa20.79■□□□□ 0.92
KARS-204ENST00000564578 OSCARQ8IYS5 282 aa20.78■□□□□ 0.92
KARS-204ENST00000564578 CUL7Q14999 1698 aa20.78■□□□□ 0.92
KARS-204ENST00000564578 GRIN2AQ12879 1464 aa20.77■□□□□ 0.92
KARS-204ENST00000564578 PRXQ9BXM0 1461 aa20.73■□□□□ 0.91
KARS-204ENST00000564578 RAPGEF2Q9Y4G8 1499 aa20.69■□□□□ 0.9
KARS-204ENST00000564578 NUP160Q12769 1436 aa20.68■□□□□ 0.9
KARS-204ENST00000564578 CEP170Q5SW79 1584 aa20.66■□□□□ 0.9
KARS-204ENST00000564578 DNAJC5Q9H3Z4 198 aa20.62■□□□□ 0.89
KARS-204ENST00000564578 CLASP1Q7Z460 1538 aa20.62■□□□□ 0.89
KARS-204ENST00000564578 KIF21BO75037 1637 aa20.56■□□□□ 0.88
KARS-204ENST00000564578 KIAA0586Q9BVV6 1533 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms