RNA–Protein interactions for RNA: ENST00000337354.8

SEC13-201, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SEC13, Length 1,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-201ENST00000337354 NISCHQ9Y2I1 1504 aa36.51■■■■□ 3.43
SEC13-201ENST00000337354 CCDC180Q9P1Z9 1646 aa32.41■■■□□ 2.78
SEC13-201ENST00000337354 ABCC9O60706 1549 aa31.7■■■□□ 2.67
SEC13-201ENST00000337354 RB1CC1Q8TDY2 1594 aa30.49■■■□□ 2.47
SEC13-201ENST00000337354 DCAF8L2P0C7V8 631 aa30.46■■■□□ 2.47
SEC13-201ENST00000337354 ZCCHC6Q5VYS8 1495 aaKnown RBP30.46■■■□□ 2.47
SEC13-201ENST00000337354 NACADO15069 1562 aa30.39■■■□□ 2.46
SEC13-201ENST00000337354 MYO15BQ96JP2 1530 aa30.27■■■□□ 2.44
SEC13-201ENST00000337354 DCAF1Q9Y4B6 1507 aa30.26■■■□□ 2.43
SEC13-201ENST00000337354 UNC13AQ9UPW8 1703 aa29.9■■■□□ 2.38
SEC13-201ENST00000337354 SCRIBQ14160 1630 aa29.59■■■□□ 2.33
SEC13-201ENST00000337354 BICRAQ9NZM4 1560 aa29.52■■■□□ 2.32
SEC13-201ENST00000337354 PABPN1Q86U42 306 aaKnown RBP eCLIP29.52■■■□□ 2.32
SEC13-201ENST00000337354 SHROOM4Q9ULL8 1493 aa29.21■■■□□ 2.27
SEC13-201ENST00000337354 DNAJC5BQ9UF47 199 aa28.96■■■□□ 2.23
SEC13-201ENST00000337354 EIF4G1Q04637 1599 aaKnown RBP28.78■■■□□ 2.2
SEC13-201ENST00000337354 CC2D2AQ9P2K1 1620 aa28.69■■■□□ 2.18
SEC13-201ENST00000337354 CECR2Q9BXF3 1484 aa28.45■■■□□ 2.15
SEC13-201ENST00000337354 BAZ1AQ9NRL2 1556 aaPredicted RBP28.27■■■□□ 2.12
SEC13-201ENST00000337354 SMARCA4P51532 1647 aa28.25■■■□□ 2.11
SEC13-201ENST00000337354 MROH2BQ7Z745 1585 aa28.1■■■□□ 2.09
SEC13-201ENST00000337354 SMARCA2P51531 1590 aa28.04■■■□□ 2.08
SEC13-201ENST00000337354 ATAD2BQ9ULI0 1458 aa28.03■■■□□ 2.08
SEC13-201ENST00000337354 NCAPD3P42695 1498 aa28.01■■■□□ 2.07
SEC13-201ENST00000337354 RSF1Q96T23 1441 aaPredicted RBP27.98■■■□□ 2.07
SEC13-201ENST00000337354 PEG3Q9GZU2 1588 aa27.95■■■□□ 2.06
SEC13-201ENST00000337354 HMGXB3Q12766 1538 aa27.93■■■□□ 2.06
SEC13-201ENST00000337354 BAZ1BQ9UIG0 1483 aaKnown RBP27.85■■■□□ 2.05
SEC13-201ENST00000337354 WIZO95785 1651 aa27.75■■■□□ 2.03
SEC13-201ENST00000337354 SUPT5HO00267 1087 aaKnown RBP27.58■■■□□ 2.01
SEC13-201ENST00000337354 TOP2AP11388 1531 aaKnown RBP27.55■■■□□ 2
SEC13-201ENST00000337354 NESP48681 1621 aa27.4■■□□□ 1.98
SEC13-201ENST00000337354 ERCC6Q03468 1493 aa27.36■■□□□ 1.97
SEC13-201ENST00000337354 LAMC3Q9Y6N6 1575 aa27.35■■□□□ 1.97
SEC13-201ENST00000337354 CCDC88BA6NC98 1476 aa27.27■■□□□ 1.96
SEC13-201ENST00000337354 CADPSQ9ULU8 1353 aa27.23■■□□□ 1.95
SEC13-201ENST00000337354 KIF21AQ7Z4S6 1674 aa27.19■■□□□ 1.94
SEC13-201ENST00000337354 CFTRP13569 1480 aa27.1■■□□□ 1.93
SEC13-201ENST00000337354 PDS5BQ9NTI5 1447 aa27.1■■□□□ 1.93
SEC13-201ENST00000337354 THOC2Q8NI27 1593 aaKnown RBP27.07■■□□□ 1.92
SEC13-201ENST00000337354 CUX2O14529 1486 aa27.04■■□□□ 1.92
SEC13-201ENST00000337354 PRDM2Q13029 1718 aa27.03■■□□□ 1.92
SEC13-201ENST00000337354 CEP164Q9UPV0 1460 aa26.93■■□□□ 1.9
SEC13-201ENST00000337354 FANCD2Q9BXW9 1451 aa26.92■■□□□ 1.9
SEC13-201ENST00000337354 MRC2Q9UBG0 1479 aa26.88■■□□□ 1.89
SEC13-201ENST00000337354 WDR62O43379 1518 aa26.8■■□□□ 1.88
SEC13-201ENST00000337354 URB2Q14146 1524 aaKnown RBP26.65■■□□□ 1.86
SEC13-201ENST00000337354 ABCC8Q09428 1581 aa26.54■■□□□ 1.84
SEC13-201ENST00000337354 DNMBPQ6XZF7 1577 aa26.5■■□□□ 1.83
SEC13-201ENST00000337354 TOPBP1Q92547 1522 aa26.49■■□□□ 1.83
SEC13-201ENST00000337354 WRNQ14191 1432 aaPredicted RBP eCLIP26.38■■□□□ 1.81
SEC13-201ENST00000337354 CUX1P39880 1505 aa26.33■■□□□ 1.81
SEC13-201ENST00000337354 IFT140Q96RY7 1462 aa26.32■■□□□ 1.8
SEC13-201ENST00000337354 POLA1P09884 1462 aaPredicted RBP26.25■■□□□ 1.79
SEC13-201ENST00000337354 TARBP1Q13395 1621 aaKnown RBP26.22■■□□□ 1.79
SEC13-201ENST00000337354 EIF4G3O43432 1585 aaKnown RBP26.21■■□□□ 1.79
SEC13-201ENST00000337354 FGD5Q6ZNL6 1462 aa26.21■■□□□ 1.79
SEC13-201ENST00000337354 SOGA1O94964 1423 aa26.21■■□□□ 1.79
SEC13-201ENST00000337354 ZNF608Q9ULD9 1512 aaPredicted RBP26.2■■□□□ 1.79
SEC13-201ENST00000337354 TOP2BQ02880 1626 aa26.2■■□□□ 1.78
SEC13-201ENST00000337354 SYNJ1O43426 1573 aa26.17■■□□□ 1.78
SEC13-201ENST00000337354 BIVM-ERCC5R4GMW8 1640 aa26.13■■□□□ 1.77
SEC13-201ENST00000337354 RAD54L2Q9Y4B4 1467 aa26.13■■□□□ 1.77
SEC13-201ENST00000337354 DNAJC5Q9H3Z4 198 aa26.12■■□□□ 1.77
SEC13-201ENST00000337354 TRIM41Q8WV44 630 aa26.08■■□□□ 1.77
SEC13-201ENST00000337354 WDR97A6NE52 1622 aa26.08■■□□□ 1.77
SEC13-201ENST00000337354 AQRO60306 1485 aaKnown RBP eCLIP26.03■■□□□ 1.762e-7■■■■□ 26.2
SEC13-201ENST00000337354 ABCA10Q8WWZ4 1543 aa26.01■■□□□ 1.75
SEC13-201ENST00000337354 TDRD9Q8NDG6 1382 aaKnown RBP26■■□□□ 1.75
SEC13-201ENST00000337354 CHIC1Q5VXU3 224 aa25.96■■□□□ 1.75
SEC13-201ENST00000337354 PBRM1Q86U86 1689 aa25.95■■□□□ 1.74
SEC13-201ENST00000337354 CHD1O14646 1710 aa25.93■■□□□ 1.74
SEC13-201ENST00000337354 ABCA5Q8WWZ7 1642 aa25.89■■□□□ 1.74
SEC13-201ENST00000337354 GAPVD1Q14C86 1478 aa25.87■■□□□ 1.73
SEC13-201ENST00000337354 SNAPC4Q5SXM2 1469 aa25.86■■□□□ 1.73
SEC13-201ENST00000337354 GRIN2BQ13224 1484 aa25.84■■□□□ 1.73
SEC13-201ENST00000337354 KIF27Q86VH2 1401 aa25.84■■□□□ 1.73
SEC13-201ENST00000337354 OSCARQ8IYS5 282 aa25.8■■□□□ 1.72
SEC13-201ENST00000337354 MAGI1Q96QZ7 1491 aaPredicted RBP25.79■■□□□ 1.72
SEC13-201ENST00000337354 FBLN2P98095 1184 aa25.74■■□□□ 1.71
SEC13-201ENST00000337354 IGF1RP08069 1367 aa25.7■■□□□ 1.7
SEC13-201ENST00000337354 ERICH3Q5RHP9 1530 aa25.7■■□□□ 1.7
SEC13-201ENST00000337354 SYNJ2O15056 1496 aa25.68■■□□□ 1.7
SEC13-201ENST00000337354 ADAMTS12P58397 1594 aa25.67■■□□□ 1.7
SEC13-201ENST00000337354 CHMP7Q8WUX9 453 aaPredicted RBP25.67■■□□□ 1.7
SEC13-201ENST00000337354 FHAD1B1AJZ9 1412 aa25.61■■□□□ 1.69
SEC13-201ENST00000337354 RUSC2Q8N2Y8 1516 aa25.61■■□□□ 1.69
SEC13-201ENST00000337354 EEA1Q15075 1411 aa25.6■■□□□ 1.69
SEC13-201ENST00000337354 RIMBP3CA6NJZ7 1639 aa25.57■■□□□ 1.68
SEC13-201ENST00000337354 RIMBP3BA6NNM3 1639 aa25.57■■□□□ 1.68
SEC13-201ENST00000337354 RIMBP3Q9UFD9 1639 aa25.57■■□□□ 1.68
SEC13-201ENST00000337354 CSRNP3Q8WYN3 585 aa25.56■■□□□ 1.68
SEC13-201ENST00000337354 CARMIL1Q5VZK9 1371 aa25.55■■□□□ 1.68
SEC13-201ENST00000337354 CLASP1Q7Z460 1538 aa25.54■■□□□ 1.68
SEC13-201ENST00000337354 GRIN2AQ12879 1464 aa25.53■■□□□ 1.68
SEC13-201ENST00000337354 ARHGEF11O15085 1522 aa25.51■■□□□ 1.67
SEC13-201ENST00000337354 CUL7Q14999 1698 aa25.47■■□□□ 1.67
SEC13-201ENST00000337354 FAM9AQ8IZU1 332 aaPredicted RBP25.46■■□□□ 1.67
SEC13-201ENST00000337354 CEP170Q5SW79 1584 aa25.44■■□□□ 1.66
SEC13-201ENST00000337354 PRXQ9BXM0 1461 aa25.4■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms