RNA–Protein interactions for RNA: ENST00000419181.5

GTF3A-202, Transcript of general transcription factor IIIA, humanhuman

TSL 1 (best)

Gene GTF3A, Length 1,191 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-202ENST00000419181 NISCHQ9Y2I1 1504 aa49.9■■■■■ 5.58
GTF3A-202ENST00000419181 CCDC180Q9P1Z9 1646 aa44.51■■■■■ 4.72
GTF3A-202ENST00000419181 ABCC9O60706 1549 aa43.69■■■■■ 4.59
GTF3A-202ENST00000419181 RB1CC1Q8TDY2 1594 aa41.97■■■■■ 4.31
GTF3A-202ENST00000419181 NACADO15069 1562 aa41.87■■■■■ 4.29
GTF3A-202ENST00000419181 DCAF8L2P0C7V8 631 aa41.66■■■■■ 4.26
GTF3A-202ENST00000419181 MYO15BQ96JP2 1530 aa41.57■■■■■ 4.25
GTF3A-202ENST00000419181 ZCCHC6Q5VYS8 1495 aaKnown RBP41.54■■■■■ 4.24
GTF3A-202ENST00000419181 DCAF1Q9Y4B6 1507 aa41.3■■■■■ 4.2
GTF3A-202ENST00000419181 UNC13AQ9UPW8 1703 aa41.07■■■■■ 4.16
GTF3A-202ENST00000419181 PABPN1Q86U42 306 aaKnown RBP eCLIP40.76■■■■■ 4.12
GTF3A-202ENST00000419181 BICRAQ9NZM4 1560 aa40.74■■■■■ 4.11
GTF3A-202ENST00000419181 SCRIBQ14160 1630 aa40.55■■■■■ 4.08
GTF3A-202ENST00000419181 DNAJC5BQ9UF47 199 aa40.41■■■■■ 4.06
GTF3A-202ENST00000419181 SHROOM4Q9ULL8 1493 aa40.29■■■■■ 4.04
GTF3A-202ENST00000419181 EIF4G1Q04637 1599 aaKnown RBP39.66■■■■□ 3.94
GTF3A-202ENST00000419181 CC2D2AQ9P2K1 1620 aa39.54■■■■□ 3.92
GTF3A-202ENST00000419181 CECR2Q9BXF3 1484 aa39.3■■■■□ 3.88
GTF3A-202ENST00000419181 SMARCA4P51532 1647 aa38.79■■■■□ 3.8
GTF3A-202ENST00000419181 BAZ1AQ9NRL2 1556 aaPredicted RBP38.7■■■■□ 3.79
GTF3A-202ENST00000419181 NCAPD3P42695 1498 aa38.63■■■■□ 3.77
GTF3A-202ENST00000419181 ATAD2BQ9ULI0 1458 aa38.6■■■■□ 3.77
GTF3A-202ENST00000419181 SMARCA2P51531 1590 aa38.56■■■■□ 3.76
GTF3A-202ENST00000419181 MROH2BQ7Z745 1585 aa38.45■■■■□ 3.75
GTF3A-202ENST00000419181 HMGXB3Q12766 1538 aa38.44■■■■□ 3.74
GTF3A-202ENST00000419181 PEG3Q9GZU2 1588 aa38.44■■■■□ 3.74
GTF3A-202ENST00000419181 BAZ1BQ9UIG0 1483 aaKnown RBP38.28■■■■□ 3.72
GTF3A-202ENST00000419181 WIZO95785 1651 aa38.04■■■■□ 3.68
GTF3A-202ENST00000419181 RSF1Q96T23 1441 aaPredicted RBP37.92■■■■□ 3.66
GTF3A-202ENST00000419181 NESP48681 1621 aa37.76■■■■□ 3.64
GTF3A-202ENST00000419181 ERCC6Q03468 1493 aa37.67■■■■□ 3.62
GTF3A-202ENST00000419181 LAMC3Q9Y6N6 1575 aa37.66■■■■□ 3.62
GTF3A-202ENST00000419181 TOP2AP11388 1531 aaKnown RBP37.62■■■■□ 3.61
GTF3A-202ENST00000419181 CADPSQ9ULU8 1353 aa37.46■■■■□ 3.59
GTF3A-202ENST00000419181 CUX2O14529 1486 aa37.39■■■■□ 3.58
GTF3A-202ENST00000419181 PDS5BQ9NTI5 1447 aa37.37■■■■□ 3.57
GTF3A-202ENST00000419181 KIF21AQ7Z4S6 1674 aa37.34■■■■□ 3.57
GTF3A-202ENST00000419181 THOC2Q8NI27 1593 aaKnown RBP37.29■■■■□ 3.56
GTF3A-202ENST00000419181 CFTRP13569 1480 aa37.22■■■■□ 3.55
GTF3A-202ENST00000419181 CCDC88BA6NC98 1476 aa37.15■■■■□ 3.54
GTF3A-202ENST00000419181 FANCD2Q9BXW9 1451 aa37.05■■■■□ 3.52
GTF3A-202ENST00000419181 MRC2Q9UBG0 1479 aa37.02■■■■□ 3.52
GTF3A-202ENST00000419181 CEP164Q9UPV0 1460 aa37.02■■■■□ 3.52
GTF3A-202ENST00000419181 PRDM2Q13029 1718 aa36.97■■■■□ 3.51
GTF3A-202ENST00000419181 WDR62O43379 1518 aa36.94■■■■□ 3.5
GTF3A-202ENST00000419181 DNAJC5Q9H3Z4 198 aa36.79■■■■□ 3.48
GTF3A-202ENST00000419181 URB2Q14146 1524 aaKnown RBP36.71■■■■□ 3.47
GTF3A-202ENST00000419181 SUPT5HO00267 1087 aaKnown RBP36.71■■■■□ 3.47
GTF3A-202ENST00000419181 TOPBP1Q92547 1522 aa36.44■■■■□ 3.42
GTF3A-202ENST00000419181 ABCC8Q09428 1581 aa36.41■■■■□ 3.42
GTF3A-202ENST00000419181 DNMBPQ6XZF7 1577 aa36.4■■■■□ 3.42
GTF3A-202ENST00000419181 IFT140Q96RY7 1462 aa36.26■■■■□ 3.4
GTF3A-202ENST00000419181 ZNF608Q9ULD9 1512 aaPredicted RBP36.13■■■■□ 3.37
GTF3A-202ENST00000419181 POLA1P09884 1462 aaPredicted RBP36.12■■■■□ 3.37
GTF3A-202ENST00000419181 CUX1P39880 1505 aa36.09■■■■□ 3.37
GTF3A-202ENST00000419181 TARBP1Q13395 1621 aaKnown RBP36.09■■■■□ 3.37
GTF3A-202ENST00000419181 EIF4G3O43432 1585 aaKnown RBP36■■■■□ 3.35
GTF3A-202ENST00000419181 FGD5Q6ZNL6 1462 aa35.99■■■■□ 3.35
GTF3A-202ENST00000419181 RAD54L2Q9Y4B4 1467 aa35.94■■■■□ 3.34
GTF3A-202ENST00000419181 SOGA1O94964 1423 aa35.93■■■■□ 3.34
GTF3A-202ENST00000419181 AQRO60306 1485 aaKnown RBP eCLIP35.86■■■■□ 3.336e-7■■■■□ 20.5
GTF3A-202ENST00000419181 WDR97A6NE52 1622 aa35.79■■■■□ 3.32
GTF3A-202ENST00000419181 TDRD9Q8NDG6 1382 aaKnown RBP35.76■■■■□ 3.31
GTF3A-202ENST00000419181 WRNQ14191 1432 aaPredicted RBP eCLIP35.75■■■■□ 3.31
GTF3A-202ENST00000419181 OSCARQ8IYS5 282 aa35.75■■■■□ 3.31
GTF3A-202ENST00000419181 BIVM-ERCC5R4GMW8 1640 aa35.75■■■■□ 3.31
GTF3A-202ENST00000419181 TOP2BQ02880 1626 aa35.73■■■■□ 3.31
GTF3A-202ENST00000419181 SYNJ1O43426 1573 aa35.72■■■■□ 3.31
GTF3A-202ENST00000419181 ABCA10Q8WWZ4 1543 aa35.64■■■■□ 3.3
GTF3A-202ENST00000419181 CHD1O14646 1710 aa35.59■■■■□ 3.29
GTF3A-202ENST00000419181 GRIN2BQ13224 1484 aa35.56■■■■□ 3.28
GTF3A-202ENST00000419181 ABCA5Q8WWZ7 1642 aa35.55■■■■□ 3.28
GTF3A-202ENST00000419181 SNAPC4Q5SXM2 1469 aa35.54■■■■□ 3.28
GTF3A-202ENST00000419181 GAPVD1Q14C86 1478 aa35.53■■■■□ 3.28
GTF3A-202ENST00000419181 MAGI1Q96QZ7 1491 aaPredicted RBP35.51■■■■□ 3.28
GTF3A-202ENST00000419181 PBRM1Q86U86 1689 aa35.51■■■■□ 3.28
GTF3A-202ENST00000419181 TRIM41Q8WV44 630 aa35.45■■■■□ 3.27
GTF3A-202ENST00000419181 FBLN2P98095 1184 aa35.42■■■■□ 3.26
GTF3A-202ENST00000419181 SYNJ2O15056 1496 aa35.37■■■■□ 3.25
GTF3A-202ENST00000419181 CHMP7Q8WUX9 453 aaPredicted RBP35.31■■■■□ 3.24
GTF3A-202ENST00000419181 RIMBP3CA6NJZ7 1639 aa35.26■■■■□ 3.24
GTF3A-202ENST00000419181 RIMBP3BA6NNM3 1639 aa35.26■■■■□ 3.24
GTF3A-202ENST00000419181 RIMBP3Q9UFD9 1639 aa35.26■■■■□ 3.24
GTF3A-202ENST00000419181 ARHGEF11O15085 1522 aa35.22■■■■□ 3.23
GTF3A-202ENST00000419181 ERICH3Q5RHP9 1530 aa35.22■■■■□ 3.23
GTF3A-202ENST00000419181 ADAMTS12P58397 1594 aa35.21■■■■□ 3.23
GTF3A-202ENST00000419181 CLASP1Q7Z460 1538 aa35.21■■■■□ 3.23
GTF3A-202ENST00000419181 GRIN2AQ12879 1464 aa35.12■■■■□ 3.21
GTF3A-202ENST00000419181 FHAD1B1AJZ9 1412 aa35.11■■■■□ 3.21
GTF3A-202ENST00000419181 KIF27Q86VH2 1401 aa35.01■■■■□ 3.2
GTF3A-202ENST00000419181 NUP160Q12769 1436 aa34.98■■■■□ 3.19
GTF3A-202ENST00000419181 CEP170Q5SW79 1584 aa34.97■■■■□ 3.19
GTF3A-202ENST00000419181 ARAP1Q96P48 1450 aa34.93■■■■□ 3.18
GTF3A-202ENST00000419181 IGF1RP08069 1367 aa34.9■■■■□ 3.18
GTF3A-202ENST00000419181 CYB5RLQ6IPT4 315 aa34.9■■■■□ 3.18
GTF3A-202ENST00000419181 CUL7Q14999 1698 aa34.86■■■■□ 3.17
GTF3A-202ENST00000419181 SHROOM2Q13796 1616 aa34.77■■■■□ 3.16
GTF3A-202ENST00000419181 RUSC2Q8N2Y8 1516 aa34.71■■■■□ 3.15
GTF3A-202ENST00000419181 ERCC6L2Q5T890 1561 aa34.69■■■■□ 3.14
GTF3A-202ENST00000419181 CARMIL1Q5VZK9 1371 aa34.68■■■■□ 3.14
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms