Protein–RNA interactions for Protein: P23396

RPS3, 40S ribosomal protein S3, humanhuman

Known RBP eCLIP

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3P23396 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.13■■□□□ 1.131e-6■■■■□ 21.1
RPS3P23396 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.061e-6■■■■□ 21.1
RPS3P23396 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 01e-6■■■■□ 21.1
RPS3P23396 ERP44-201ENST00000262455 4854 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.431e-7■■■■□ 21.1
RPS3P23396 AKR1A1-205ENST00000473038 948 ntTSL 214.62□□□□□ -0.075e-7■■■■□ 21.1
RPS3P23396 AKR1A1-211ENST00000495913 421 ntTSL 39.9□□□□□ -0.825e-7■■■■□ 21.1
RPS3P23396 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.041e-7■■■■□ 21.1
RPS3P23396 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.051e-6■■■■□ 21.1
RPS3P23396 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.32■□□□□ 0.29e-11■■■■□ 21
RPS3P23396 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.199e-11■■■■□ 21
RPS3P23396 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC15.59■□□□□ 0.099e-11■■■■□ 21
RPS3P23396 MDH1-211ENST00000484538 910 ntTSL 21.45□□□□□ -2.185e-11■■■■□ 21
RPS3P23396 PDHB-203ENST00000461692 1535 ntTSL 1 (best)18.52■□□□□ 0.563e-8■■■■□ 21
RPS3P23396 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.13□□□□□ -0.153e-8■■■■□ 21
RPS3P23396 PDHB-202ENST00000383714 1478 ntTSL 1 (best)13.84□□□□□ -0.193e-8■■■■□ 21
RPS3P23396 PDHB-204ENST00000469364 1616 ntTSL 513.68□□□□□ -0.223e-8■■■■□ 21
RPS3P23396 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.253e-8■■■■□ 21
RPS3P23396 PDHB-207ENST00000479945 4459 ntTSL 213.12□□□□□ -0.313e-8■■■■□ 21
RPS3P23396 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC13.06□□□□□ -0.323e-8■■■■□ 21
RPS3P23396 TMED3-205ENST00000558562 938 ntTSL 213.21□□□□□ -0.297e-7■■■■□ 21
RPS3P23396 PLD3-208ENST00000464586 253 ntTSL 1 (best)8.1□□□□□ -1.113e-6■■■■□ 21
RPS3P23396 ILVBL-205ENST00000531635 947 ntTSL 318.32■□□□□ 0.525e-7■■■■□ 21
RPS3P23396 CD74-207ENST00000522153 556 ntTSL 212.89□□□□□ -0.351e-8■■■■□ 21
RPS3P23396 CD74-205ENST00000517791 1015 ntTSL 312.64□□□□□ -0.391e-8■■■■□ 21
RPS3P23396 CD74-211ENST00000523836 724 ntTSL 212.39□□□□□ -0.431e-8■■■■□ 21
RPS3P23396 CD74-210ENST00000523813 546 ntTSL 48.57□□□□□ -1.041e-8■■■■□ 21
RPS3P23396 HLA-E-202ENST00000484194 726 nt24.54■■□□□ 1.523e-7■■■■□ 21
RPS3P23396 HLA-E-203ENST00000493699 907 nt21.26■□□□□ 0.993e-7■■■■□ 21
RPS3P23396 DKK1-203ENST00000476752 544 ntTSL 24.02□□□□□ -1.771e-6■■■■□ 21
RPS3P23396 DKK1-204ENST00000494277 465 ntTSL 52.5□□□□□ -2.011e-6■■■■□ 21
RPS3P23396 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.195e-7■■■■□ 21
RPS3P23396 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.3□□□□□ -0.285e-7■■■■□ 21
RPS3P23396 AC087632.1-209ENST00000634259 825 ntTSL 510.94□□□□□ -0.661e-7■■■■□ 21
RPS3P23396 PCLAF-206ENST00000559280 748 ntTSL 29.23□□□□□ -0.931e-7■■■■□ 21
RPS3P23396 AC087632.1-204ENST00000635160 692 ntTSL 48.04□□□□□ -1.121e-7■■■■□ 21
RPS3P23396 AC087632.1-213ENST00000634538 924 ntTSL 57.67□□□□□ -1.181e-7■■■■□ 21
RPS3P23396 AC087632.1-211ENST00000560278 595 ntTSL 47.32□□□□□ -1.241e-7■■■■□ 21
RPS3P23396 AC087632.1-201ENST00000634251 1973 ntTSL 1 (best)5.84□□□□□ -1.481e-7■■■■□ 21
RPS3P23396 AC087632.1-202ENST00000634847 1821 ntTSL 55.37□□□□□ -1.551e-7■■■■□ 21
RPS3P23396 AC087632.1-212ENST00000635413 706 ntTSL 54.97□□□□□ -1.611e-7■■■■□ 21
RPS3P23396 AC087632.1-215ENST00000558783 726 ntTSL 51.5□□□□□ -2.171e-7■■■■□ 21
RPS3P23396 TGFBI-212ENST00000514242 574 ntTSL 210.84□□□□□ -0.676e-8■■■■□ 21
RPS3P23396 MCFD2-216ENST00000487121 627 ntTSL 314.77□□□□□ -0.059e-9■■■■□ 21
RPS3P23396 MCFD2-210ENST00000417180 565 ntTSL 412.65□□□□□ -0.389e-9■■■■□ 21
RPS3P23396 PSMA1-208ENST00000529524 743 ntTSL 32.03□□□□□ -2.081e-8■■■■□ 21
RPS3P23396 DCAF13-207ENST00000611541 3496 nt4.09□□□□□ -1.761e-7■■■■□ 21
RPS3P23396 COPE-204ENST00000593827 601 ntTSL 319.51■□□□□ 0.716e-8■■■■□ 21
RPS3P23396 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.027e-7■■■■□ 21
RPS3P23396 ACLY-209ENST00000590770 583 ntTSL 412.04□□□□□ -0.481e-8■■■■□ 21
RPS3P23396 NUCB1-211ENST00000485798 938 ntTSL 314.8□□□□□ -0.042e-7■■■■□ 21
RPS3P23396 ATP6V1E1-204ENST00000413576 800 ntTSL 34.68□□□□□ -1.665e-7■■■■□ 21
RPS3P23396 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.86■□□□□ 0.455e-11■■■■□ 21
RPS3P23396 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.195e-11■■■■□ 21
RPS3P23396 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.275e-11■■■■□ 21
RPS3P23396 BCAT1-208ENST00000544418 2320 ntTSL 1 (best)14.49□□□□□ -0.091e-6■■■■□ 20.9
RPS3P23396 BCAT1-210ENST00000612790 675 ntTSL 26.39□□□□□ -1.391e-6■■■■□ 20.9
RPS3P23396 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.472e-18■■■■□ 20.9
RPS3P23396 UBA52-214ENST00000599595 692 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.372e-18■■■■□ 20.9
RPS3P23396 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC11.01□□□□□ -0.652e-18■■■■□ 20.9
RPS3P23396 UBA52-203ENST00000594527 357 ntTSL 35.7□□□□□ -1.53e-18■■■■□ 20.9
RPS3P23396 UBA52-206ENST00000596272 508 ntTSL 24.72□□□□□ -1.652e-18■■■■□ 20.9
RPS3P23396 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.672e-18■■■■□ 20.9
RPS3P23396 SDHA-214ENST00000511810 3001 ntTSL 29.94□□□□□ -0.828e-7■■■■□ 20.9
RPS3P23396 PRDX6-201ENST00000340385 1751 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.382e-9■■■■□ 20.9
RPS3P23396 MRPL38-206ENST00000474548 529 ntTSL 217■□□□□ 0.313e-10■■■■□ 20.9
RPS3P23396 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.02□□□□□ -0.331e-8■■■■□ 20.9
RPS3P23396 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.835e-7■■■■□ 20.9
RPS3P23396 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.585e-7■■■■□ 20.9
RPS3P23396 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.035e-7■■■■□ 20.9
RPS3P23396 SDHA-215ENST00000512962 935 ntTSL 311.31□□□□□ -0.67e-7■■■■□ 20.9
RPS3P23396 B2M-208ENST00000559916 1081 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.773e-8■■■■□ 20.9
RPS3P23396 NAGPA-217ENST00000591478 408 ntTSL 521.05■□□□□ 0.964e-7■■■■□ 20.9
RPS3P23396 BAG6-258ENST00000464126 609 ntTSL 214.43□□□□□ -0.14e-8■■■■□ 20.9
RPS3P23396 BAG6-249ENST00000441793 783 ntTSL 211.78□□□□□ -0.524e-8■■■■□ 20.9
RPS3P23396 BAG6-238ENST00000422948 513 ntTSL 26.4□□□□□ -1.384e-8■■■■□ 20.9
RPS3P23396 IDH3B-203ENST00000462967 959 ntTSL 215.28■□□□□ 0.048e-7■■■■□ 20.9
RPS3P23396 GART-213ENST00000467575 922 ntTSL 35.91□□□□□ -1.466e-8■■■■□ 20.9
RPS3P23396 KPNA2-205ENST00000583269 611 ntTSL 44.83□□□□□ -1.647e-8■■■■□ 20.9
RPS3P23396 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.762e-7■■■■□ 20.9
RPS3P23396 FBL-204ENST00000594443 805 ntTSL 311.9□□□□□ -0.52e-7■■■■□ 20.9
RPS3P23396 ST6GAL1-216ENST00000458216 507 ntTSL 312.67□□□□□ -0.382e-24■■■■□ 20.9
RPS3P23396 ST6GAL1-208ENST00000440338 568 ntTSL 44□□□□□ -1.772e-24■■■■□ 20.9
RPS3P23396 VAT1-207ENST00000589828 521 ntTSL 27.38□□□□□ -1.232e-7■■■■□ 20.9
RPS3P23396 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.31e-6■■■■□ 20.9
RPS3P23396 NUSAP1-201ENST00000260359 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC9.92□□□□□ -0.821e-6■■■■□ 20.9
RPS3P23396 NUSAP1-212ENST00000560747 2256 ntAPPRIS ALT2 TSL 1 (best) BASIC8.74□□□□□ -1.011e-6■■■■□ 20.9
RPS3P23396 NUSAP1-205ENST00000558123 1934 ntTSL 58.21□□□□□ -1.11e-6■■■■□ 20.9
RPS3P23396 NUSAP1-210ENST00000560177 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.131e-6■■■■□ 20.9
RPS3P23396 NUSAP1-203ENST00000450592 1301 ntAPPRIS ALT2 TSL 2 BASIC7.85□□□□□ -1.151e-6■■■■□ 20.9
RPS3P23396 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.291e-6■■■■□ 20.9
RPS3P23396 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC21.81■■□□□ 1.081e-6■■■■□ 20.9
RPS3P23396 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.041e-6■■■■□ 20.9
RPS3P23396 TMEM165-205ENST00000508404 1657 ntTSL 221.47■■□□□ 1.031e-6■■■■□ 20.9
RPS3P23396 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.024e-11■■■■□ 20.9
RPS3P23396 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.66□□□□□ -0.224e-11■■■■□ 20.9
RPS3P23396 HMGCS1-206ENST00000511774 500 ntTSL 417.81■□□□□ 0.449e-13■■■■□ 20.9
RPS3P23396 MDH1-207ENST00000442225 785 ntTSL 53.98□□□□□ -1.771e-9■■■■□ 20.9
RPS3P23396 ECI1-202ENST00000561688 705 ntTSL 226.07■■□□□ 1.762e-7■■■■□ 20.9
RPS3P23396 C5orf15-203ENST00000509913 487 ntTSL 315.61■□□□□ 0.091e-6■■■■□ 20.9
RPS3P23396 FCGR2A-205ENST00000467525 1642 ntTSL 59.44□□□□□ -0.92e-6■■■■□ 20.9
Retrieved 100 of 24,271 protein–RNA pairs in 155.4 ms