RNA–Protein interactions for RNA: ENST00000493699.1

HLA-E-203, Transcript of major histocompatibility complex, class I, E, humanhuman

Gene HLA-E, Length 907 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-E-203ENST00000493699 NISCHQ9Y2I1 1504 aa54.59■■■■■ 6.33
HLA-E-203ENST00000493699 CCDC180Q9P1Z9 1646 aa48.71■■■■■ 5.39
HLA-E-203ENST00000493699 ABCC9O60706 1549 aa48.3■■■■■ 5.32
HLA-E-203ENST00000493699 RB1CC1Q8TDY2 1594 aa46.17■■■■■ 4.98
HLA-E-203ENST00000493699 NACADO15069 1562 aa45.99■■■■■ 4.95
HLA-E-203ENST00000493699 DCAF8L2P0C7V8 631 aa45.84■■■■■ 4.93
HLA-E-203ENST00000493699 MYO15BQ96JP2 1530 aa45.57■■■■■ 4.88
HLA-E-203ENST00000493699 ZCCHC6Q5VYS8 1495 aaKnown RBP45.33■■■■■ 4.85
HLA-E-203ENST00000493699 DCAF1Q9Y4B6 1507 aa45.14■■■■■ 4.82
HLA-E-203ENST00000493699 UNC13AQ9UPW8 1703 aa45.1■■■■■ 4.81
HLA-E-203ENST00000493699 PABPN1Q86U42 306 aaKnown RBP eCLIP45.09■■■■■ 4.81
HLA-E-203ENST00000493699 DNAJC5BQ9UF47 199 aa45.01■■■■■ 4.8
HLA-E-203ENST00000493699 BICRAQ9NZM4 1560 aa44.86■■■■■ 4.77
HLA-E-203ENST00000493699 SCRIBQ14160 1630 aa44.39■■■■■ 4.7
HLA-E-203ENST00000493699 SHROOM4Q9ULL8 1493 aa44.28■■■■■ 4.68
HLA-E-203ENST00000493699 EIF4G1Q04637 1599 aaKnown RBP43.69■■■■■ 4.58
HLA-E-203ENST00000493699 CC2D2AQ9P2K1 1620 aa43.65■■■■■ 4.58
HLA-E-203ENST00000493699 CECR2Q9BXF3 1484 aa43.47■■■■■ 4.55
HLA-E-203ENST00000493699 NCAPD3P42695 1498 aa42.51■■■■■ 4.4
HLA-E-203ENST00000493699 SMARCA4P51532 1647 aa42.44■■■■■ 4.38
HLA-E-203ENST00000493699 ATAD2BQ9ULI0 1458 aa42.42■■■■■ 4.38
HLA-E-203ENST00000493699 BAZ1AQ9NRL2 1556 aaPredicted RBP42.31■■■■■ 4.36
HLA-E-203ENST00000493699 SMARCA2P51531 1590 aa42.28■■■■■ 4.36
HLA-E-203ENST00000493699 HMGXB3Q12766 1538 aa42.17■■■■■ 4.34
HLA-E-203ENST00000493699 PEG3Q9GZU2 1588 aa42.08■■■■■ 4.33
HLA-E-203ENST00000493699 MROH2BQ7Z745 1585 aa42.06■■■■■ 4.32
HLA-E-203ENST00000493699 BAZ1BQ9UIG0 1483 aaKnown RBP41.98■■■■■ 4.31
HLA-E-203ENST00000493699 NESP48681 1621 aa41.65■■■■■ 4.26
HLA-E-203ENST00000493699 ERCC6Q03468 1493 aa41.63■■■■■ 4.25
HLA-E-203ENST00000493699 WIZO95785 1651 aa41.55■■■■■ 4.24
HLA-E-203ENST00000493699 CUX2O14529 1486 aa41.45■■■■■ 4.23
HLA-E-203ENST00000493699 LAMC3Q9Y6N6 1575 aa41.41■■■■■ 4.22
HLA-E-203ENST00000493699 RSF1Q96T23 1441 aaPredicted RBP41.39■■■■■ 4.22
HLA-E-203ENST00000493699 CADPSQ9ULU8 1353 aa41.23■■■■■ 4.19
HLA-E-203ENST00000493699 PDS5BQ9NTI5 1447 aa41.18■■■■■ 4.18
HLA-E-203ENST00000493699 THOC2Q8NI27 1593 aaKnown RBP41.09■■■■■ 4.17
HLA-E-203ENST00000493699 KIF21AQ7Z4S6 1674 aa41.06■■■■■ 4.16
HLA-E-203ENST00000493699 TOP2AP11388 1531 aaKnown RBP41.05■■■■■ 4.16
HLA-E-203ENST00000493699 DNAJC5Q9H3Z4 198 aa40.98■■■■■ 4.15
HLA-E-203ENST00000493699 CFTRP13569 1480 aa40.85■■■■■ 4.13
HLA-E-203ENST00000493699 MRC2Q9UBG0 1479 aa40.77■■■■■ 4.12
HLA-E-203ENST00000493699 FANCD2Q9BXW9 1451 aa40.71■■■■■ 4.11
HLA-E-203ENST00000493699 CEP164Q9UPV0 1460 aa40.69■■■■■ 4.1
HLA-E-203ENST00000493699 WDR62O43379 1518 aa40.67■■■■■ 4.1
HLA-E-203ENST00000493699 CCDC88BA6NC98 1476 aa40.63■■■■■ 4.09
HLA-E-203ENST00000493699 URB2Q14146 1524 aaKnown RBP40.37■■■■■ 4.05
HLA-E-203ENST00000493699 PRDM2Q13029 1718 aa40.36■■■■■ 4.05
HLA-E-203ENST00000493699 TOPBP1Q92547 1522 aa40■■■■□ 3.99
HLA-E-203ENST00000493699 ABCC8Q09428 1581 aa39.95■■■■□ 3.99
HLA-E-203ENST00000493699 IFT140Q96RY7 1462 aa39.88■■■■□ 3.98
HLA-E-203ENST00000493699 DNMBPQ6XZF7 1577 aa39.87■■■■□ 3.97
HLA-E-203ENST00000493699 SUPT5HO00267 1087 aaKnown RBP39.85■■■■□ 3.97
HLA-E-203ENST00000493699 ZNF608Q9ULD9 1512 aaPredicted RBP39.79■■■■□ 3.96
HLA-E-203ENST00000493699 OSCARQ8IYS5 282 aa39.68■■■■□ 3.94
HLA-E-203ENST00000493699 POLA1P09884 1462 aaPredicted RBP39.62■■■■□ 3.93
HLA-E-203ENST00000493699 TARBP1Q13395 1621 aaKnown RBP39.62■■■■□ 3.93
HLA-E-203ENST00000493699 EIF4G3O43432 1585 aaKnown RBP39.54■■■■□ 3.92
HLA-E-203ENST00000493699 AQRO60306 1485 aaKnown RBP eCLIP39.5■■■■□ 3.915e-6■■■□□ 15.6
HLA-E-203ENST00000493699 CUX1P39880 1505 aa39.48■■■■□ 3.91
HLA-E-203ENST00000493699 RAD54L2Q9Y4B4 1467 aa39.48■■■■□ 3.91
HLA-E-203ENST00000493699 SOGA1O94964 1423 aa39.47■■■■□ 3.91
HLA-E-203ENST00000493699 FGD5Q6ZNL6 1462 aa39.43■■■■□ 3.9
HLA-E-203ENST00000493699 TDRD9Q8NDG6 1382 aaKnown RBP39.33■■■■□ 3.89
HLA-E-203ENST00000493699 TRIM41Q8WV44 630 aa39.28■■■■□ 3.88
HLA-E-203ENST00000493699 WDR97A6NE52 1622 aa39.22■■■■□ 3.87
HLA-E-203ENST00000493699 CHD1O14646 1710 aa39.13■■■■□ 3.85
HLA-E-203ENST00000493699 FBLN2P98095 1184 aa39.11■■■■□ 3.85
HLA-E-203ENST00000493699 SNAPC4Q5SXM2 1469 aa39.07■■■■□ 3.85
HLA-E-203ENST00000493699 GRIN2BQ13224 1484 aa39.05■■■■□ 3.84
HLA-E-203ENST00000493699 RIMBP3CA6NJZ7 1639 aa39.04■■■■□ 3.84
HLA-E-203ENST00000493699 RIMBP3BA6NNM3 1639 aa39.04■■■■□ 3.84
HLA-E-203ENST00000493699 RIMBP3Q9UFD9 1639 aa39.04■■■■□ 3.84
HLA-E-203ENST00000493699 ABCA10Q8WWZ4 1543 aa39.03■■■■□ 3.84
HLA-E-203ENST00000493699 MAGI1Q96QZ7 1491 aaPredicted RBP39■■■■□ 3.83
HLA-E-203ENST00000493699 ARHGEF11O15085 1522 aa38.99■■■■□ 3.83
HLA-E-203ENST00000493699 WRNQ14191 1432 aaPredicted RBP eCLIP38.99■■■■□ 3.83
HLA-E-203ENST00000493699 GAPVD1Q14C86 1478 aa38.98■■■■□ 3.83
HLA-E-203ENST00000493699 TOP2BQ02880 1626 aa38.96■■■■□ 3.83
HLA-E-203ENST00000493699 BIVM-ERCC5R4GMW8 1640 aa38.94■■■■□ 3.82
HLA-E-203ENST00000493699 CHMP7Q8WUX9 453 aaPredicted RBP38.93■■■■□ 3.82
HLA-E-203ENST00000493699 SYNJ1O43426 1573 aa38.92■■■■□ 3.82
HLA-E-203ENST00000493699 ABCA5Q8WWZ7 1642 aa38.89■■■■□ 3.82
HLA-E-203ENST00000493699 SYNJ2O15056 1496 aa38.87■■■■□ 3.81
HLA-E-203ENST00000493699 PBRM1Q86U86 1689 aa38.86■■■■□ 3.81
HLA-E-203ENST00000493699 CLASP1Q7Z460 1538 aa38.76■■■■□ 3.8
HLA-E-203ENST00000493699 CYB5RLQ6IPT4 315 aa38.71■■■■□ 3.79
HLA-E-203ENST00000493699 ARAP1Q96P48 1450 aa38.65■■■■□ 3.78
HLA-E-203ENST00000493699 GRIN2AQ12879 1464 aa38.55■■■■□ 3.76
HLA-E-203ENST00000493699 ADAMTS12P58397 1594 aa38.55■■■■□ 3.76
HLA-E-203ENST00000493699 ERICH3Q5RHP9 1530 aa38.53■■■■□ 3.76
HLA-E-203ENST00000493699 FHAD1B1AJZ9 1412 aa38.51■■■■□ 3.76
HLA-E-203ENST00000493699 NUP160Q12769 1436 aa38.44■■■■□ 3.74
HLA-E-203ENST00000493699 CEP170Q5SW79 1584 aa38.38■■■■□ 3.73
HLA-E-203ENST00000493699 KIF27Q86VH2 1401 aa38.22■■■■□ 3.71
HLA-E-203ENST00000493699 IGF1RP08069 1367 aa38.22■■■■□ 3.71
HLA-E-203ENST00000493699 ERCC6L2Q5T890 1561 aa38.19■■■■□ 3.7
HLA-E-203ENST00000493699 SHROOM2Q13796 1616 aa38.18■■■■□ 3.7
HLA-E-203ENST00000493699 TRHP20396 242 aaPredicted RBP38.08■■■■□ 3.69
HLA-E-203ENST00000493699 JPH4Q96JJ6 628 aa38.07■■■■□ 3.68
HLA-E-203ENST00000493699 CUL7Q14999 1698 aa38.01■■■■□ 3.68
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms