RNA–Protein interactions for RNA: ENST00000589828.1

VAT1-207, Transcript of vesicle amine transport 1, humanhuman

TSL 2

Gene VAT1, Length 521 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-207ENST00000589828 NISCHQ9Y2I1 1504 aa20.53■□□□□ 0.88
VAT1-207ENST00000589828 ABCC9O60706 1549 aa19■□□□□ 0.63
VAT1-207ENST00000589828 AEBP2Q6ZN18 517 aaPredicted RBP18.76■□□□□ 0.59
VAT1-207ENST00000589828 CCDC180Q9P1Z9 1646 aa18.45■□□□□ 0.54
VAT1-207ENST00000589828 CHIC1Q5VXU3 224 aa18.35■□□□□ 0.53
VAT1-207ENST00000589828 DNAJC5BQ9UF47 199 aa18.3■□□□□ 0.52
VAT1-207ENST00000589828 RB1CC1Q8TDY2 1594 aa17.8■□□□□ 0.44
VAT1-207ENST00000589828 PABPN1Q86U42 306 aaKnown RBP eCLIP17.71■□□□□ 0.43
VAT1-207ENST00000589828 NACADO15069 1562 aa17.61■□□□□ 0.41
VAT1-207ENST00000589828 DCAF8L2P0C7V8 631 aa17.56■□□□□ 0.4
VAT1-207ENST00000589828 BICRAQ9NZM4 1560 aa17.38■□□□□ 0.37
VAT1-207ENST00000589828 UNC13AQ9UPW8 1703 aa17.32■□□□□ 0.36
VAT1-207ENST00000589828 MYO15BQ96JP2 1530 aa17.25■□□□□ 0.35
VAT1-207ENST00000589828 CECR2Q9BXF3 1484 aa17.14■□□□□ 0.33
VAT1-207ENST00000589828 CC2D2AQ9P2K1 1620 aa17.07■□□□□ 0.32
VAT1-207ENST00000589828 SHROOM4Q9ULL8 1493 aa17.02■□□□□ 0.32
VAT1-207ENST00000589828 DNAJC5Q9H3Z4 198 aa17.01■□□□□ 0.31
VAT1-207ENST00000589828 EIF4G1Q04637 1599 aaKnown RBP16.95■□□□□ 0.3
VAT1-207ENST00000589828 ZCCHC6Q5VYS8 1495 aaKnown RBP16.93■□□□□ 0.3
VAT1-207ENST00000589828 DCAF1Q9Y4B6 1507 aa16.89■□□□□ 0.29
VAT1-207ENST00000589828 SCRIBQ14160 1630 aa16.88■□□□□ 0.29
VAT1-207ENST00000589828 CUX2O14529 1486 aa16.48■□□□□ 0.23
VAT1-207ENST00000589828 ERCC6Q03468 1493 aa16.38■□□□□ 0.21
VAT1-207ENST00000589828 NCAPD3P42695 1498 aa16.34■□□□□ 0.21
VAT1-207ENST00000589828 ATAD2BQ9ULI0 1458 aa16.24■□□□□ 0.19
VAT1-207ENST00000589828 NESP48681 1621 aa16.23■□□□□ 0.19
VAT1-207ENST00000589828 PHF23Q9BUL5 403 aaPredicted RBP16.17■□□□□ 0.18
VAT1-207ENST00000589828 HMGXB3Q12766 1538 aa16.11■□□□□ 0.17
VAT1-207ENST00000589828 TRIM41Q8WV44 630 aa16.1■□□□□ 0.17
VAT1-207ENST00000589828 SMARCA2P51531 1590 aa16.09■□□□□ 0.17
VAT1-207ENST00000589828 THOC2Q8NI27 1593 aaKnown RBP16.05■□□□□ 0.16
VAT1-207ENST00000589828 SMARCA4P51532 1647 aa16.05■□□□□ 0.16
VAT1-207ENST00000589828 BAZ1BQ9UIG0 1483 aaKnown RBP16.01■□□□□ 0.15
VAT1-207ENST00000589828 LAMC3Q9Y6N6 1575 aa15.94■□□□□ 0.14
VAT1-207ENST00000589828 PDS5BQ9NTI5 1447 aa15.92■□□□□ 0.14
VAT1-207ENST00000589828 BAZ1AQ9NRL2 1556 aaPredicted RBP15.91■□□□□ 0.14
VAT1-207ENST00000589828 SENP3Q9H4L4 574 aaPredicted RBP15.9■□□□□ 0.14
VAT1-207ENST00000589828 PEG3Q9GZU2 1588 aa15.89■□□□□ 0.13
VAT1-207ENST00000589828 KIF21AQ7Z4S6 1674 aa15.86■□□□□ 0.13
VAT1-207ENST00000589828 MROH2BQ7Z745 1585 aa15.85■□□□□ 0.13
VAT1-207ENST00000589828 CADPSQ9ULU8 1353 aa15.84■□□□□ 0.13
VAT1-207ENST00000589828 MRC2Q9UBG0 1479 aa15.81■□□□□ 0.12
VAT1-207ENST00000589828 WDR62O43379 1518 aa15.76■□□□□ 0.11
VAT1-207ENST00000589828 OSCARQ8IYS5 282 aa15.72■□□□□ 0.11
VAT1-207ENST00000589828 CEP164Q9UPV0 1460 aa15.65■□□□□ 0.1
VAT1-207ENST00000589828 FANCD2Q9BXW9 1451 aa15.63■□□□□ 0.09
VAT1-207ENST00000589828 WIZO95785 1651 aa15.57■□□□□ 0.08
VAT1-207ENST00000589828 CFTRP13569 1480 aa15.56■□□□□ 0.08
VAT1-207ENST00000589828 URB2Q14146 1524 aaKnown RBP15.54■□□□□ 0.08
VAT1-207ENST00000589828 RIMBP3CA6NJZ7 1639 aa15.49■□□□□ 0.07
VAT1-207ENST00000589828 RIMBP3BA6NNM3 1639 aa15.49■□□□□ 0.07
VAT1-207ENST00000589828 RIMBP3Q9UFD9 1639 aa15.49■□□□□ 0.07
VAT1-207ENST00000589828 ZNF608Q9ULD9 1512 aaPredicted RBP15.44■□□□□ 0.06
VAT1-207ENST00000589828 ARHGEF11O15085 1522 aa15.43■□□□□ 0.06
VAT1-207ENST00000589828 CYB5RLQ6IPT4 315 aa15.41■□□□□ 0.06
VAT1-207ENST00000589828 RSF1Q96T23 1441 aaPredicted RBP15.4■□□□□ 0.06
VAT1-207ENST00000589828 IFT140Q96RY7 1462 aa15.37■□□□□ 0.05
VAT1-207ENST00000589828 TOP2AP11388 1531 aaKnown RBP15.35■□□□□ 0.05
VAT1-207ENST00000589828 TRHP20396 242 aaPredicted RBP15.33■□□□□ 0.04
VAT1-207ENST00000589828 ARAP1Q96P48 1450 aa15.3■□□□□ 0.04
VAT1-207ENST00000589828 TOPBP1Q92547 1522 aa15.28■□□□□ 0.04
VAT1-207ENST00000589828 AQRO60306 1485 aaKnown RBP eCLIP15.26■□□□□ 0.037e-15■■■■□ 21.7
VAT1-207ENST00000589828 CCDC88BA6NC98 1476 aa15.24■□□□□ 0.03
VAT1-207ENST00000589828 EIF4G3O43432 1585 aaKnown RBP15.23■□□□□ 0.03
VAT1-207ENST00000589828 FBLN2P98095 1184 aa15.22■□□□□ 0.03
VAT1-207ENST00000589828 ABCC8Q09428 1581 aa15.15■□□□□ 0.02
VAT1-207ENST00000589828 DNMBPQ6XZF7 1577 aa15.15■□□□□ 0.02
VAT1-207ENST00000589828 TARBP1Q13395 1621 aaKnown RBP15.14■□□□□ 0.01
VAT1-207ENST00000589828 CHD1O14646 1710 aa15.14■□□□□ 0.01
VAT1-207ENST00000589828 PRDM2Q13029 1718 aa15.13■□□□□ 0.01
VAT1-207ENST00000589828 POLA1P09884 1462 aaPredicted RBP15.12■□□□□ 0.01
VAT1-207ENST00000589828 TDRD9Q8NDG6 1382 aaKnown RBP15.11■□□□□ 0.01
VAT1-207ENST00000589828 RAD54L2Q9Y4B4 1467 aa15.11■□□□□ 0.01
VAT1-207ENST00000589828 SOGA1O94964 1423 aa15.05■□□□□ -0
VAT1-207ENST00000589828 SNAPC4Q5SXM2 1469 aa15.05■□□□□ -0
VAT1-207ENST00000589828 CLASP1Q7Z460 1538 aa15.05■□□□□ -0
VAT1-207ENST00000589828 CHMP7Q8WUX9 453 aaPredicted RBP15.03■□□□□ -0
VAT1-207ENST00000589828 FGD5Q6ZNL6 1462 aa14.95□□□□□ -0.02
VAT1-207ENST00000589828 MAGI1Q96QZ7 1491 aaPredicted RBP14.95□□□□□ -0.02
VAT1-207ENST00000589828 SYNJ1O43426 1573 aa14.94□□□□□ -0.02
VAT1-207ENST00000589828 GRIN2BQ13224 1484 aa14.94□□□□□ -0.02
VAT1-207ENST00000589828 GAPVD1Q14C86 1478 aa14.94□□□□□ -0.02
VAT1-207ENST00000589828 PLPPR3Q6T4P5 718 aa14.93□□□□□ -0.02
VAT1-207ENST00000589828 SYNJ2O15056 1496 aa14.92□□□□□ -0.02
VAT1-207ENST00000589828 CUX1P39880 1505 aa14.9□□□□□ -0.02
VAT1-207ENST00000589828 WDR97A6NE52 1622 aa14.88□□□□□ -0.03
VAT1-207ENST00000589828 ERCC6L2Q5T890 1561 aa14.84□□□□□ -0.03
VAT1-207ENST00000589828 ABCA10Q8WWZ4 1543 aa14.76□□□□□ -0.05
VAT1-207ENST00000589828 FOXD1Q16676 465 aa14.76□□□□□ -0.05
VAT1-207ENST00000589828 GRIN2AQ12879 1464 aa14.74□□□□□ -0.05
VAT1-207ENST00000589828 NUP160Q12769 1436 aa14.74□□□□□ -0.05
VAT1-207ENST00000589828 CEP170Q5SW79 1584 aa14.73□□□□□ -0.05
VAT1-207ENST00000589828 PBRM1Q86U86 1689 aa14.72□□□□□ -0.05
VAT1-207ENST00000589828 ABCA5Q8WWZ7 1642 aa14.72□□□□□ -0.05
VAT1-207ENST00000589828 ADAMTS12P58397 1594 aa14.65□□□□□ -0.06
VAT1-207ENST00000589828 KDM4FA0A1W2PPD8 638 aa14.64□□□□□ -0.07
VAT1-207ENST00000589828 FAM69CQ0P6D2 419 aa14.64□□□□□ -0.07
VAT1-207ENST00000589828 FHAD1B1AJZ9 1412 aa14.64□□□□□ -0.07
VAT1-207ENST00000589828 SHROOM2Q13796 1616 aa14.63□□□□□ -0.07
VAT1-207ENST00000589828 WRNQ14191 1432 aaPredicted RBP eCLIP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms