RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 NISCHQ9Y2I1 1504 aa28.7■■■□□ 2.18
SDC1-202ENST00000381150 CCDC180Q9P1Z9 1646 aa24.59■■□□□ 1.53
SDC1-202ENST00000381150 ZCCHC6Q5VYS8 1495 aaKnown RBP24.24■■□□□ 1.47
SDC1-202ENST00000381150 SHROOM4Q9ULL8 1493 aa24■■□□□ 1.43
SDC1-202ENST00000381150 DCAF1Q9Y4B6 1507 aa23.65■■□□□ 1.38
SDC1-202ENST00000381150 DCAF8L2P0C7V8 631 aa23.54■■□□□ 1.36
SDC1-202ENST00000381150 SUPT5HO00267 1087 aaKnown RBP23.41■■□□□ 1.34
SDC1-202ENST00000381150 MYO15BQ96JP2 1530 aa23.09■■□□□ 1.29
SDC1-202ENST00000381150 HRCP23327 699 aa23.09■■□□□ 1.29
SDC1-202ENST00000381150 PCGF6Q9BYE7 350 aa23.08■■□□□ 1.29
SDC1-202ENST00000381150 PPARGC1BQ86YN6 1023 aaKnown RBP23.04■■□□□ 1.28
SDC1-202ENST00000381150 SCRIBQ14160 1630 aa22.83■■□□□ 1.25
SDC1-202ENST00000381150 CHIC1Q5VXU3 224 aa22.8■■□□□ 1.24
SDC1-202ENST00000381150 ABCC9O60706 1549 aa22.8■■□□□ 1.24
SDC1-202ENST00000381150 NACADO15069 1562 aa22.76■■□□□ 1.23
SDC1-202ENST00000381150 RSF1Q96T23 1441 aaPredicted RBP22.58■■□□□ 1.21
SDC1-202ENST00000381150 RB1CC1Q8TDY2 1594 aa22.39■■□□□ 1.17
SDC1-202ENST00000381150 CECR2Q9BXF3 1484 aa22.35■■□□□ 1.17
SDC1-202ENST00000381150 LOC105371045A0A1W2PR82 267 aa22.31■■□□□ 1.16
SDC1-202ENST00000381150 MROH2BQ7Z745 1585 aa22.26■■□□□ 1.15
SDC1-202ENST00000381150 EHMT2Q96KQ7 1210 aa22.15■■□□□ 1.14
SDC1-202ENST00000381150 UNC13AQ9UPW8 1703 aa22.13■■□□□ 1.13
SDC1-202ENST00000381150 WIZO95785 1651 aa22.12■■□□□ 1.13
SDC1-202ENST00000381150 PELP1Q8IZL8 1130 aaKnown RBP22.09■■□□□ 1.13
SDC1-202ENST00000381150 BAZ1AQ9NRL2 1556 aaPredicted RBP22.04■■□□□ 1.12
SDC1-202ENST00000381150 TRIM26Q12899 539 aaPredicted RBP21.96■■□□□ 1.11
SDC1-202ENST00000381150 SCAF1Q9H7N4 1312 aaKnown RBP21.94■■□□□ 1.1
SDC1-202ENST00000381150 SMARCA4P51532 1647 aa21.9■■□□□ 1.1
SDC1-202ENST00000381150 TRIM41Q8WV44 630 aa21.9■■□□□ 1.1
SDC1-202ENST00000381150 BICRAQ9NZM4 1560 aa21.86■■□□□ 1.09
SDC1-202ENST00000381150 EIF4G1Q04637 1599 aaKnown RBP21.82■■□□□ 1.08
SDC1-202ENST00000381150 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
SDC1-202ENST00000381150 FAM9AQ8IZU1 332 aaPredicted RBP21.78■■□□□ 1.08
SDC1-202ENST00000381150 PABPN1Q86U42 306 aaKnown RBP eCLIP21.69■■□□□ 1.06
SDC1-202ENST00000381150 CCDC88BA6NC98 1476 aa21.68■■□□□ 1.06
SDC1-202ENST00000381150 SMARCA2P51531 1590 aa21.68■■□□□ 1.06
SDC1-202ENST00000381150 ZEB1P37275 1124 aaPredicted RBP21.67■■□□□ 1.06
SDC1-202ENST00000381150 PEG3Q9GZU2 1588 aa21.59■■□□□ 1.05
SDC1-202ENST00000381150 ABCC8Q09428 1581 aa21.48■■□□□ 1.03
SDC1-202ENST00000381150 TTBK1Q5TCY1 1321 aaPredicted RBP21.47■■□□□ 1.03
SDC1-202ENST00000381150 NEUROD1Q13562 356 aa21.44■■□□□ 1.02
SDC1-202ENST00000381150 GTF3C3Q9Y5Q9 886 aa21.43■■□□□ 1.02
SDC1-202ENST00000381150 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.4■■□□□ 1.02
SDC1-202ENST00000381150 ATAD2BQ9ULI0 1458 aa21.39■■□□□ 1.02
SDC1-202ENST00000381150 ACIN1Q9UKV3 1341 aaKnown RBP21.38■■□□□ 1.01
SDC1-202ENST00000381150 CCER1Q8TC90 406 aaPredicted RBP21.37■■□□□ 1.01
SDC1-202ENST00000381150 YTHDC1Q96MU7 727 aaKnown RBP21.29■■□□□ 1
SDC1-202ENST00000381150 CENPBP07199 599 aaPredicted RBP21.26■□□□□ 0.99
SDC1-202ENST00000381150 BAZ1BQ9UIG0 1483 aaKnown RBP21.25■□□□□ 0.99
SDC1-202ENST00000381150 SOGA1O94964 1423 aa21.23■□□□□ 0.99
SDC1-202ENST00000381150 DIEXFQ68CQ4 756 aaKnown RBP21.19■□□□□ 0.98
SDC1-202ENST00000381150 WRNQ14191 1432 aaPredicted RBP eCLIP21.17■□□□□ 0.98
SDC1-202ENST00000381150 RUSC2Q8N2Y8 1516 aa21.16■□□□□ 0.98
SDC1-202ENST00000381150 EEA1Q15075 1411 aa21.14■□□□□ 0.97
SDC1-202ENST00000381150 MYT1Q01538 1121 aa21.12■□□□□ 0.97
SDC1-202ENST00000381150 SYNJ1O43426 1573 aa21.12■□□□□ 0.97
SDC1-202ENST00000381150 CSRNP3Q8WYN3 585 aa21.08■□□□□ 0.96
SDC1-202ENST00000381150 NCAPD3P42695 1498 aa21.07■□□□□ 0.96
SDC1-202ENST00000381150 HMGXB3Q12766 1538 aa21.04■□□□□ 0.96
SDC1-202ENST00000381150 TNIKQ9UKE5 1360 aa21.04■□□□□ 0.96
SDC1-202ENST00000381150 CEP162Q5TB80 1403 aa21■□□□□ 0.95
SDC1-202ENST00000381150 GOLGA3Q08378 1498 aa20.93■□□□□ 0.94
SDC1-202ENST00000381150 TOP2BQ02880 1626 aa20.92■□□□□ 0.94
SDC1-202ENST00000381150 KIF21BO75037 1637 aa20.89■□□□□ 0.94
SDC1-202ENST00000381150 BIVM-ERCC5R4GMW8 1640 aa20.88■□□□□ 0.93
SDC1-202ENST00000381150 CEP164Q9UPV0 1460 aa20.85■□□□□ 0.93
SDC1-202ENST00000381150 UBTFP17480 764 aaKnown RBP20.84■□□□□ 0.93
SDC1-202ENST00000381150 CFTRP13569 1480 aa20.8■□□□□ 0.92
SDC1-202ENST00000381150 CUX1P39880 1505 aa20.75■□□□□ 0.91
SDC1-202ENST00000381150 RAPGEF2Q9Y4G8 1499 aa20.74■□□□□ 0.91
SDC1-202ENST00000381150 PRDM2Q13029 1718 aa20.68■□□□□ 0.9
SDC1-202ENST00000381150 ZNF316A6NFI3 1004 aaPredicted RBP20.66■□□□□ 0.9
SDC1-202ENST00000381150 CLIP1P30622 1438 aa20.65■□□□□ 0.9
SDC1-202ENST00000381150 MIER1Q8N108 512 aa20.65■□□□□ 0.9
SDC1-202ENST00000381150 PRXQ9BXM0 1461 aa20.64■□□□□ 0.9
SDC1-202ENST00000381150 CC2D2AQ9P2K1 1620 aa20.61■□□□□ 0.89
SDC1-202ENST00000381150 ERICH3Q5RHP9 1530 aa20.61■□□□□ 0.89
SDC1-202ENST00000381150 HNRNPUL2Q1KMD3 747 aaKnown RBP20.58■□□□□ 0.89
SDC1-202ENST00000381150 CADPSQ9ULU8 1353 aa20.58■□□□□ 0.89
SDC1-202ENST00000381150 VPS8Q8N3P4 1428 aa20.57■□□□□ 0.88
SDC1-202ENST00000381150 KIF27Q86VH2 1401 aa20.53■□□□□ 0.88
SDC1-202ENST00000381150 RANGAP1P46060 587 aaPredicted RBP20.51■□□□□ 0.87
SDC1-202ENST00000381150 ARAP1Q96P48 1450 aa20.42■□□□□ 0.86
SDC1-202ENST00000381150 IGF1RP08069 1367 aa20.39■□□□□ 0.85
SDC1-202ENST00000381150 FGD5Q6ZNL6 1462 aa20.38■□□□□ 0.85
SDC1-202ENST00000381150 CUX2O14529 1486 aa20.36■□□□□ 0.85
SDC1-202ENST00000381150 FANCD2Q9BXW9 1451 aa20.35■□□□□ 0.85
SDC1-202ENST00000381150 BCANQ96GW7 911 aa20.31■□□□□ 0.84
SDC1-202ENST00000381150 ARHGAP35Q9NRY4 1499 aa20.29■□□□□ 0.84
SDC1-202ENST00000381150 APLP2Q06481 763 aa20.29■□□□□ 0.84
SDC1-202ENST00000381150 NESP48681 1621 aa20.28■□□□□ 0.84
SDC1-202ENST00000381150 DNMBPQ6XZF7 1577 aa20.26■□□□□ 0.83
SDC1-202ENST00000381150 CARMIL1Q5VZK9 1371 aa20.24■□□□□ 0.83
SDC1-202ENST00000381150 TOPBP1Q92547 1522 aa20.22■□□□□ 0.83
SDC1-202ENST00000381150 KANK4Q5T7N3 995 aaPredicted RBP20.22■□□□□ 0.83
SDC1-202ENST00000381150 SUPT16HQ9Y5B9 1047 aaKnown RBP20.21■□□□□ 0.83
SDC1-202ENST00000381150 ABCA10Q8WWZ4 1543 aa20.19■□□□□ 0.82
SDC1-202ENST00000381150 POLA1P09884 1462 aaPredicted RBP20.19■□□□□ 0.82
SDC1-202ENST00000381150 RAD54L2Q9Y4B4 1467 aa20.18■□□□□ 0.82
SDC1-202ENST00000381150 LAMC3Q9Y6N6 1575 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms