RNA–Protein interactions for RNA: ENST00000464586.1

PLD3-208, Transcript of phospholipase D family member 3, humanhuman

TSL 1 (best)

Gene PLD3, Length 253 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PLD3-208ENST00000464586 NISCHQ9Y2I1 1504 aa19.87■□□□□ 0.77
PLD3-208ENST00000464586 CCDC180Q9P1Z9 1646 aa17.71■□□□□ 0.43
PLD3-208ENST00000464586 ABCC9O60706 1549 aa17.15■□□□□ 0.34
PLD3-208ENST00000464586 RB1CC1Q8TDY2 1594 aa16.6■□□□□ 0.25
PLD3-208ENST00000464586 NACADO15069 1562 aa16.59■□□□□ 0.25
PLD3-208ENST00000464586 ZCCHC6Q5VYS8 1495 aaKnown RBP16.56■□□□□ 0.24
PLD3-208ENST00000464586 DCAF8L2P0C7V8 631 aa16.56■□□□□ 0.24
PLD3-208ENST00000464586 MYO15BQ96JP2 1530 aa16.5■□□□□ 0.23
PLD3-208ENST00000464586 DCAF1Q9Y4B6 1507 aa16.47■□□□□ 0.23
PLD3-208ENST00000464586 UNC13AQ9UPW8 1703 aa16.28■□□□□ 0.2
PLD3-208ENST00000464586 SCRIBQ14160 1630 aa16.11■□□□□ 0.17
PLD3-208ENST00000464586 BICRAQ9NZM4 1560 aa16.05■□□□□ 0.16
PLD3-208ENST00000464586 PABPN1Q86U42 306 aaKnown RBP eCLIP16.01■□□□□ 0.15
PLD3-208ENST00000464586 SHROOM4Q9ULL8 1493 aa15.91■□□□□ 0.14
PLD3-208ENST00000464586 EIF4G1Q04637 1599 aaKnown RBP15.62■□□□□ 0.09
PLD3-208ENST00000464586 DNAJC5BQ9UF47 199 aa15.61■□□□□ 0.09
PLD3-208ENST00000464586 CC2D2AQ9P2K1 1620 aa15.55■□□□□ 0.08
PLD3-208ENST00000464586 CECR2Q9BXF3 1484 aa15.44■□□□□ 0.06
PLD3-208ENST00000464586 SMARCA4P51532 1647 aa15.43■□□□□ 0.06
PLD3-208ENST00000464586 BAZ1AQ9NRL2 1556 aaPredicted RBP15.42■□□□□ 0.06
PLD3-208ENST00000464586 SMARCA2P51531 1590 aa15.31■□□□□ 0.04
PLD3-208ENST00000464586 MROH2BQ7Z745 1585 aa15.3■□□□□ 0.04
PLD3-208ENST00000464586 ATAD2BQ9ULI0 1458 aa15.28■□□□□ 0.04
PLD3-208ENST00000464586 PEG3Q9GZU2 1588 aa15.27■□□□□ 0.03
PLD3-208ENST00000464586 NCAPD3P42695 1498 aa15.27■□□□□ 0.03
PLD3-208ENST00000464586 HMGXB3Q12766 1538 aa15.22■□□□□ 0.03
PLD3-208ENST00000464586 WIZO95785 1651 aa15.19■□□□□ 0.02
PLD3-208ENST00000464586 BAZ1BQ9UIG0 1483 aaKnown RBP15.18■□□□□ 0.02
PLD3-208ENST00000464586 RSF1Q96T23 1441 aaPredicted RBP15.14■□□□□ 0.01
PLD3-208ENST00000464586 TOP2AP11388 1531 aaKnown RBP15.02□□□□□ -0.01
PLD3-208ENST00000464586 LAMC3Q9Y6N6 1575 aa14.9□□□□□ -0.02
PLD3-208ENST00000464586 NESP48681 1621 aa14.85□□□□□ -0.03
PLD3-208ENST00000464586 SUPT5HO00267 1087 aaKnown RBP14.83□□□□□ -0.04
PLD3-208ENST00000464586 CADPSQ9ULU8 1353 aa14.82□□□□□ -0.04
PLD3-208ENST00000464586 CCDC88BA6NC98 1476 aa14.82□□□□□ -0.04
PLD3-208ENST00000464586 ERCC6Q03468 1493 aa14.8□□□□□ -0.04
PLD3-208ENST00000464586 PRDM2Q13029 1718 aa14.8□□□□□ -0.04
PLD3-208ENST00000464586 KIF21AQ7Z4S6 1674 aa14.77□□□□□ -0.04
PLD3-208ENST00000464586 PDS5BQ9NTI5 1447 aa14.76□□□□□ -0.05
PLD3-208ENST00000464586 CFTRP13569 1480 aa14.75□□□□□ -0.05
PLD3-208ENST00000464586 FANCD2Q9BXW9 1451 aa14.66□□□□□ -0.06
PLD3-208ENST00000464586 THOC2Q8NI27 1593 aaKnown RBP14.65□□□□□ -0.06
PLD3-208ENST00000464586 CEP164Q9UPV0 1460 aa14.64□□□□□ -0.07
PLD3-208ENST00000464586 CUX2O14529 1486 aa14.62□□□□□ -0.07
PLD3-208ENST00000464586 MRC2Q9UBG0 1479 aa14.6□□□□□ -0.07
PLD3-208ENST00000464586 WDR62O43379 1518 aa14.56□□□□□ -0.08
PLD3-208ENST00000464586 URB2Q14146 1524 aaKnown RBP14.5□□□□□ -0.09
PLD3-208ENST00000464586 ABCC8Q09428 1581 aa14.49□□□□□ -0.09
PLD3-208ENST00000464586 DNMBPQ6XZF7 1577 aa14.46□□□□□ -0.09
PLD3-208ENST00000464586 TOPBP1Q92547 1522 aa14.44□□□□□ -0.1
PLD3-208ENST00000464586 CUX1P39880 1505 aa14.35□□□□□ -0.11
PLD3-208ENST00000464586 IFT140Q96RY7 1462 aa14.34□□□□□ -0.11
PLD3-208ENST00000464586 BIVM-ERCC5R4GMW8 1640 aa14.32□□□□□ -0.12
PLD3-208ENST00000464586 POLA1P09884 1462 aaPredicted RBP14.31□□□□□ -0.12
PLD3-208ENST00000464586 WRNQ14191 1432 aaPredicted RBP eCLIP14.3□□□□□ -0.12
PLD3-208ENST00000464586 FGD5Q6ZNL6 1462 aa14.3□□□□□ -0.12
PLD3-208ENST00000464586 TARBP1Q13395 1621 aaKnown RBP14.3□□□□□ -0.12
PLD3-208ENST00000464586 TOP2BQ02880 1626 aa14.29□□□□□ -0.12
PLD3-208ENST00000464586 SOGA1O94964 1423 aa14.27□□□□□ -0.12
PLD3-208ENST00000464586 SYNJ1O43426 1573 aa14.26□□□□□ -0.13
PLD3-208ENST00000464586 RAD54L2Q9Y4B4 1467 aa14.24□□□□□ -0.13
PLD3-208ENST00000464586 WDR97A6NE52 1622 aa14.23□□□□□ -0.13
PLD3-208ENST00000464586 EIF4G3O43432 1585 aaKnown RBP14.22□□□□□ -0.13
PLD3-208ENST00000464586 ZNF608Q9ULD9 1512 aaPredicted RBP14.22□□□□□ -0.13
PLD3-208ENST00000464586 ABCA10Q8WWZ4 1543 aa14.17□□□□□ -0.14
PLD3-208ENST00000464586 AQRO60306 1485 aaKnown RBP eCLIP14.16□□□□□ -0.14
PLD3-208ENST00000464586 PBRM1Q86U86 1689 aa14.15□□□□□ -0.14
PLD3-208ENST00000464586 TDRD9Q8NDG6 1382 aaKnown RBP14.14□□□□□ -0.15
PLD3-208ENST00000464586 ABCA5Q8WWZ7 1642 aa14.12□□□□□ -0.15
PLD3-208ENST00000464586 GAPVD1Q14C86 1478 aa14.11□□□□□ -0.15
PLD3-208ENST00000464586 GRIN2BQ13224 1484 aa14.09□□□□□ -0.15
PLD3-208ENST00000464586 CHD1O14646 1710 aa14.08□□□□□ -0.16
PLD3-208ENST00000464586 MAGI1Q96QZ7 1491 aaPredicted RBP14.06□□□□□ -0.16
PLD3-208ENST00000464586 SNAPC4Q5SXM2 1469 aa14.05□□□□□ -0.16
PLD3-208ENST00000464586 TRIM41Q8WV44 630 aa14.03□□□□□ -0.16
PLD3-208ENST00000464586 DNAJC5Q9H3Z4 198 aa14.03□□□□□ -0.16
PLD3-208ENST00000464586 ERICH3Q5RHP9 1530 aa14.02□□□□□ -0.16
PLD3-208ENST00000464586 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
PLD3-208ENST00000464586 KIF27Q86VH2 1401 aa14□□□□□ -0.17
PLD3-208ENST00000464586 FBLN2P98095 1184 aa13.99□□□□□ -0.17
PLD3-208ENST00000464586 SYNJ2O15056 1496 aa13.99□□□□□ -0.17
PLD3-208ENST00000464586 ADAMTS12P58397 1594 aa13.98□□□□□ -0.17
PLD3-208ENST00000464586 CHMP7Q8WUX9 453 aaPredicted RBP13.97□□□□□ -0.17
PLD3-208ENST00000464586 CUL7Q14999 1698 aa13.95□□□□□ -0.18
PLD3-208ENST00000464586 FHAD1B1AJZ9 1412 aa13.95□□□□□ -0.18
PLD3-208ENST00000464586 GRIN2AQ12879 1464 aa13.91□□□□□ -0.18
PLD3-208ENST00000464586 IGF1RP08069 1367 aa13.9□□□□□ -0.18
PLD3-208ENST00000464586 CHIC1Q5VXU3 224 aa13.89□□□□□ -0.19
PLD3-208ENST00000464586 RUSC2Q8N2Y8 1516 aa13.87□□□□□ -0.19
PLD3-208ENST00000464586 CLASP1Q7Z460 1538 aa13.86□□□□□ -0.19
PLD3-208ENST00000464586 CARMIL1Q5VZK9 1371 aa13.84□□□□□ -0.19
PLD3-208ENST00000464586 CEP170Q5SW79 1584 aa13.84□□□□□ -0.19
PLD3-208ENST00000464586 NUP160Q12769 1436 aa13.82□□□□□ -0.2
PLD3-208ENST00000464586 EEA1Q15075 1411 aa13.81□□□□□ -0.2
PLD3-208ENST00000464586 RIMBP3CA6NJZ7 1639 aa13.81□□□□□ -0.2
PLD3-208ENST00000464586 RIMBP3BA6NNM3 1639 aa13.81□□□□□ -0.2
PLD3-208ENST00000464586 RIMBP3Q9UFD9 1639 aa13.81□□□□□ -0.2
PLD3-208ENST00000464586 RAPGEF2Q9Y4G8 1499 aa13.79□□□□□ -0.2
PLD3-208ENST00000464586 ARHGEF11O15085 1522 aa13.78□□□□□ -0.2
PLD3-208ENST00000464586 CSRNP3Q8WYN3 585 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms