RNA–Protein interactions for RNA: ENST00000565912.1

CX3CL1-204, Transcript of C-X3-C motif chemokine ligand 1, humanhuman

TSL 1 (best) BASIC

Gene CX3CL1, Length 5,796 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1-204ENST00000565912 DCAF8L2P0C7V8 631 aa23.62■■□□□ 1.37
CX3CL1-204ENST00000565912 NISCHQ9Y2I1 1504 aa22.54■■□□□ 1.2
CX3CL1-204ENST00000565912 SUPT5HO00267 1087 aaKnown RBP22.24■■□□□ 1.15
CX3CL1-204ENST00000565912 EHMT2Q96KQ7 1210 aa21.89■■□□□ 1.1
CX3CL1-204ENST00000565912 SHROOM4Q9ULL8 1493 aa21.68■■□□□ 1.06
CX3CL1-204ENST00000565912 PELP1Q8IZL8 1130 aaKnown RBP21.63■■□□□ 1.05
CX3CL1-204ENST00000565912 APLP2Q06481 763 aa21.45■■□□□ 1.02
CX3CL1-204ENST00000565912 FAM9AQ8IZU1 332 aaPredicted RBP21.16■□□□□ 0.98
CX3CL1-204ENST00000565912 TTBK1Q5TCY1 1321 aaPredicted RBP21.15■□□□□ 0.98
CX3CL1-204ENST00000565912 RANGAP1P46060 587 aaPredicted RBP20.92■□□□□ 0.94
CX3CL1-204ENST00000565912 PCGF6Q9BYE7 350 aa20.87■□□□□ 0.93
CX3CL1-204ENST00000565912 ERICH6Q7L0X2 663 aa20.85■□□□□ 0.93
CX3CL1-204ENST00000565912 ATP1B4Q9UN42 357 aaPredicted RBP20.78■□□□□ 0.92
CX3CL1-204ENST00000565912 CCER1Q8TC90 406 aaPredicted RBP20.69■□□□□ 0.9
CX3CL1-204ENST00000565912 CENPBP07199 599 aaPredicted RBP20.65■□□□□ 0.9
CX3CL1-204ENST00000565912 TRIM41Q8WV44 630 aa20.51■□□□□ 0.87
CX3CL1-204ENST00000565912 UBTFP17480 764 aaKnown RBP20.45■□□□□ 0.86
CX3CL1-204ENST00000565912 ZEB1P37275 1124 aaPredicted RBP20.45■□□□□ 0.86
CX3CL1-204ENST00000565912 NEFLP07196 543 aa20.39■□□□□ 0.85
CX3CL1-204ENST00000565912 YTHDC1Q96MU7 727 aaKnown RBP20.33■□□□□ 0.85
CX3CL1-204ENST00000565912 PPARGC1BQ86YN6 1023 aaKnown RBP20.14■□□□□ 0.81
CX3CL1-204ENST00000565912 MYT1LQ9UL68 1186 aa20.12■□□□□ 0.81
CX3CL1-204ENST00000565912 POLR3GLQ9BT43 218 aa20.03■□□□□ 0.8
CX3CL1-204ENST00000565912 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20■□□□□ 0.79
CX3CL1-204ENST00000565912 HNRNPUL2Q1KMD3 747 aaKnown RBP20■□□□□ 0.79
CX3CL1-204ENST00000565912 DAXXQ9UER7 740 aaPredicted RBP19.97■□□□□ 0.79
CX3CL1-204ENST00000565912 ITGAEP38570 1179 aa19.96■□□□□ 0.79
CX3CL1-204ENST00000565912 CNGB1Q14028 1251 aaPredicted RBP19.87■□□□□ 0.77
CX3CL1-204ENST00000565912 MYT1Q01538 1121 aa19.85■□□□□ 0.77
CX3CL1-204ENST00000565912 CHIC1Q5VXU3 224 aa19.82■□□□□ 0.76
CX3CL1-204ENST00000565912 TRIM26Q12899 539 aaPredicted RBP19.74■□□□□ 0.75
CX3CL1-204ENST00000565912 SLC4A1APQ9BWU0 796 aaKnown RBP19.73■□□□□ 0.75
CX3CL1-204ENST00000565912 HRCP23327 699 aa19.59■□□□□ 0.73
CX3CL1-204ENST00000565912 ABCC9O60706 1549 aa19.55■□□□□ 0.72
CX3CL1-204ENST00000565912 CLSPNQ9HAW4 1339 aa19.52■□□□□ 0.72
CX3CL1-204ENST00000565912 LOC105371045A0A1W2PR82 267 aa19.49■□□□□ 0.71
CX3CL1-204ENST00000565912 ZNF316A6NFI3 1004 aaPredicted RBP19.46■□□□□ 0.71
CX3CL1-204ENST00000565912 PABPN1Q86U42 306 aaKnown RBP eCLIP19.39■□□□□ 0.69
CX3CL1-204ENST00000565912 RTL5Q5HYW3 569 aaPredicted RBP19.37■□□□□ 0.69
CX3CL1-204ENST00000565912 FAM50AQ14320 339 aaKnown RBP19.34■□□□□ 0.69
CX3CL1-204ENST00000565912 TRIM52Q96A61 297 aa19.32■□□□□ 0.68
CX3CL1-204ENST00000565912 NEUROD1Q13562 356 aa19.22■□□□□ 0.67
CX3CL1-204ENST00000565912 DIEXFQ68CQ4 756 aaKnown RBP19.22■□□□□ 0.67
CX3CL1-204ENST00000565912 ZNF326Q5BKZ1 582 aaKnown RBP19.18■□□□□ 0.66
CX3CL1-204ENST00000565912 ZBTB47Q9UFB7 747 aaPredicted RBP19.15■□□□□ 0.66
CX3CL1-204ENST00000565912 SLC24A1O60721 1099 aa19.13■□□□□ 0.65
CX3CL1-204ENST00000565912 BCANQ96GW7 911 aa19.11■□□□□ 0.65
CX3CL1-204ENST00000565912 BCL11AQ9H165 835 aa19.11■□□□□ 0.65
CX3CL1-204ENST00000565912 FBLN2P98095 1184 aa19.04■□□□□ 0.64
CX3CL1-204ENST00000565912 ANP32CO43423 234 aa19.01■□□□□ 0.63
CX3CL1-204ENST00000565912 CANXP27824 592 aaKnown RBP18.99■□□□□ 0.63
CX3CL1-204ENST00000565912 CDK11AQ9UQ88 783 aaPredicted RBP18.94■□□□□ 0.62
CX3CL1-204ENST00000565912 NEFMP07197 916 aa18.92■□□□□ 0.62
CX3CL1-204ENST00000565912 ARID3CA6NKF2 412 aa18.86■□□□□ 0.61
CX3CL1-204ENST00000565912 GTF3C3Q9Y5Q9 886 aa18.83■□□□□ 0.61
CX3CL1-204ENST00000565912 P3H3Q8IVL6 736 aa18.78■□□□□ 0.6
CX3CL1-204ENST00000565912 ZNF777Q9ULD5 760 aaPredicted RBP18.75■□□□□ 0.59
CX3CL1-204ENST00000565912 SCRIBQ14160 1630 aa18.72■□□□□ 0.59
CX3CL1-204ENST00000565912 NPM2Q86SE8 214 aaKnown RBP18.67■□□□□ 0.58
CX3CL1-204ENST00000565912 ESF1Q9H501 851 aaKnown RBP18.67■□□□□ 0.58
CX3CL1-204ENST00000565912 ANP32AP39687 249 aaKnown RBP18.65■□□□□ 0.58
CX3CL1-204ENST00000565912 PLPPR3Q6T4P5 718 aa18.64■□□□□ 0.58
CX3CL1-204ENST00000565912 ZCCHC6Q5VYS8 1495 aaKnown RBP18.64■□□□□ 0.58
CX3CL1-204ENST00000565912 CHGAP10645 457 aaKnown RBP18.62■□□□□ 0.57
CX3CL1-204ENST00000565912 STAG3Q9UJ98 1225 aa18.6■□□□□ 0.57
CX3CL1-204ENST00000565912 CCDC180Q9P1Z9 1646 aa18.55■□□□□ 0.56
CX3CL1-204ENST00000565912 HSP90AA1P07900 732 aaKnown RBP18.55■□□□□ 0.56
CX3CL1-204ENST00000565912 ANP32BQ92688 251 aaKnown RBP18.51■□□□□ 0.55
CX3CL1-204ENST00000565912 CSRNP3Q8WYN3 585 aa18.48■□□□□ 0.55
CX3CL1-204ENST00000565912 SALL2Q9Y467 1007 aaPredicted RBP18.44■□□□□ 0.54
CX3CL1-204ENST00000565912 UPF2Q9HAU5 1272 aaKnown RBP18.43■□□□□ 0.54
CX3CL1-204ENST00000565912 FKBP8Q14318 412 aa18.41■□□□□ 0.54
CX3CL1-204ENST00000565912 ACIN1Q9UKV3 1341 aaKnown RBP18.41■□□□□ 0.54
CX3CL1-204ENST00000565912 FAM9BQ8IZU0 186 aa18.41■□□□□ 0.54
CX3CL1-204ENST00000565912 TONSLQ96HA7 1378 aa18.4■□□□□ 0.54
CX3CL1-204ENST00000565912 NPM1P06748 294 aaKnown RBP eCLIP18.4■□□□□ 0.54
CX3CL1-204ENST00000565912 EIF5BO60841 1220 aaKnown RBP18.4■□□□□ 0.54
CX3CL1-204ENST00000565912 HNRNPUQ00839 825 aaKnown RBP eCLIP18.39■□□□□ 0.53
CX3CL1-204ENST00000565912 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.35■□□□□ 0.53
CX3CL1-204ENST00000565912 SCAF1Q9H7N4 1312 aaKnown RBP18.33■□□□□ 0.52
CX3CL1-204ENST00000565912 DDX10Q13206 875 aaKnown RBP18.32■□□□□ 0.52
CX3CL1-204ENST00000565912 A0A0G2JS52 829 aa18.29■□□□□ 0.52
CX3CL1-204ENST00000565912 CHIC2Q9UKJ5 165 aa18.29■□□□□ 0.52
CX3CL1-204ENST00000565912 RB1CC1Q8TDY2 1594 aa18.28■□□□□ 0.52
CX3CL1-204ENST00000565912 TMC1Q8TDI8 760 aa18.28■□□□□ 0.52
CX3CL1-204ENST00000565912 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.27■□□□□ 0.52
CX3CL1-204ENST00000565912 WDR43Q15061 677 aaKnown RBP eCLIP18.25■□□□□ 0.51
CX3CL1-204ENST00000565912 ARXQ96QS3 562 aa18.25■□□□□ 0.51
CX3CL1-204ENST00000565912 CCDC136Q96JN2 1154 aa18.23■□□□□ 0.51
CX3CL1-204ENST00000565912 KDM2AQ9Y2K7 1162 aa18.23■□□□□ 0.51
CX3CL1-204ENST00000565912 PLEKHG5O94827 1062 aa18.21■□□□□ 0.51
CX3CL1-204ENST00000565912 ZBTB7CA1YPR0 619 aa18.19■□□□□ 0.5
CX3CL1-204ENST00000565912 SENP3Q9H4L4 574 aaPredicted RBP18.17■□□□□ 0.5
CX3CL1-204ENST00000565912 NBR1Q14596 966 aa18.17■□□□□ 0.5
CX3CL1-204ENST00000565912 TSPY4P0CV99 314 aa18.15■□□□□ 0.5
CX3CL1-204ENST00000565912 TSPY10P0CW01 314 aa18.15■□□□□ 0.5
CX3CL1-204ENST00000565912 MRS2Q9HD23 443 aa18.14■□□□□ 0.49
CX3CL1-204ENST00000565912 CDK11BP21127 795 aaKnown RBP18.14■□□□□ 0.49
CX3CL1-204ENST00000565912 MYH16Q9H6N6 1097 aa18.13■□□□□ 0.49
CX3CL1-204ENST00000565912 C14orf37Q86TY3 774 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms