Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 SREBF1-213ENST00000485080 1230 ntTSL 521.52■■□□□ 1.045e-8■■□□□ 12.5
DDX55Q8NHQ9 SREBF1-204ENST00000395756 3026 ntTSL 219.42■□□□□ 0.75e-8■■□□□ 12.5
DDX55Q8NHQ9 SREBF1-218ENST00000578469 588 ntTSL 319.1■□□□□ 0.655e-8■■□□□ 12.5
DDX55Q8NHQ9 SREBF1-203ENST00000395751 4653 ntTSL 219.09■□□□□ 0.655e-8■■□□□ 12.5
DDX55Q8NHQ9 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.415e-8■■□□□ 12.5
DDX55Q8NHQ9 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.025e-8■■□□□ 12.5
DDX55Q8NHQ9 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 05e-8■■□□□ 12.5
DDX55Q8NHQ9 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.227e-7■■□□□ 12.5
DDX55Q8NHQ9 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.367e-7■■□□□ 12.5
DDX55Q8NHQ9 PIN1-204ENST00000586025 4022 ntTSL 216.61■□□□□ 0.257e-7■■□□□ 12.5
DDX55Q8NHQ9 PIN1-209ENST00000590540 702 ntTSL 316.34■□□□□ 0.217e-7■■□□□ 12.5
DDX55Q8NHQ9 MYL4-209ENST00000573747 640 ntTSL 510.24□□□□□ -0.777e-12■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.542e-11■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-204ENST00000547130 559 ntTSL 214.83□□□□□ -0.042e-11■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-212ENST00000550880 595 ntTSL 214.03□□□□□ -0.162e-11■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-201ENST00000243040 564 ntTSL 1 (best)12.9□□□□□ -0.342e-11■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-216ENST00000552341 1980 ntTSL 212.2□□□□□ -0.462e-11■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-218ENST00000552742 571 ntTSL 311.91□□□□□ -0.52e-11■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-203ENST00000351500 478 ntTSL 1 (best) BASIC10.27□□□□□ -0.772e-11■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-214ENST00000551018 847 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.82e-11■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-211ENST00000550846 392 ntTSL 2 BASIC10.08□□□□□ -0.82e-11■■□□□ 12.5
DDX55Q8NHQ9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC26.03■■□□□ 1.762e-7■■□□□ 12.5
DDX55Q8NHQ9 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.05■□□□□ 0.482e-7■■□□□ 12.5
DDX55Q8NHQ9 OAZ2-202ENST00000558194 7102 ntTSL 29.03□□□□□ -0.962e-7■■□□□ 12.5
DDX55Q8NHQ9 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC18.23■□□□□ 0.511e-7■■□□□ 12.5
DDX55Q8NHQ9 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.471e-7■■□□□ 12.5
DDX55Q8NHQ9 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.461e-7■■□□□ 12.5
DDX55Q8NHQ9 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.52e-9■■□□□ 12.5
DDX55Q8NHQ9 FAT1-202ENST00000500085 2224 ntTSL 213.92□□□□□ -0.181e-10■■□□□ 12.5
DDX55Q8NHQ9 FAT1-201ENST00000441802 14786 ntAPPRIS P2 TSL 5 BASIC9.8□□□□□ -0.841e-10■■□□□ 12.5
DDX55Q8NHQ9 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC9□□□□□ -0.971e-10■■□□□ 12.5
DDX55Q8NHQ9 RMND5B-210ENST00000515098 4066 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.22e-8■■□□□ 12.5
DDX55Q8NHQ9 ESYT1-206ENST00000550515 716 ntTSL 216.68■□□□□ 0.264e-14■■□□□ 12.5
DDX55Q8NHQ9 RAC3-202ENST00000580965 831 ntTSL 224.96■■□□□ 1.598e-8■■□□□ 12.5
DDX55Q8NHQ9 RAC3-203ENST00000584341 730 ntTSL 518.01■□□□□ 0.478e-8■■□□□ 12.5
DDX55Q8NHQ9 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.341e-18■■□□□ 12.5
DDX55Q8NHQ9 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.233e-9■■□□□ 12.5
DDX55Q8NHQ9 RPS10-203ENST00000464218 615 ntTSL 515.09■□□□□ 0.011e-18■■□□□ 12.5
DDX55Q8NHQ9 RPS10-206ENST00000494077 781 ntTSL 214.2□□□□□ -0.141e-18■■□□□ 12.5
DDX55Q8NHQ9 RPS10-204ENST00000467531 777 ntTSL 213.23□□□□□ -0.291e-18■■□□□ 12.5
DDX55Q8NHQ9 RPS10-205ENST00000480942 734 ntTSL 213.03□□□□□ -0.321e-18■■□□□ 12.5
DDX55Q8NHQ9 RPS10-201ENST00000326199 644 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.361e-18■■□□□ 12.5
DDX55Q8NHQ9 RPS10-202ENST00000344700 650 ntTSL 3 BASIC12.54□□□□□ -0.41e-18■■□□□ 12.5
DDX55Q8NHQ9 RPS10-NUDT3-203ENST00000639877 2911 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.521e-18■■□□□ 12.5
DDX55Q8NHQ9 RPS10-NUDT3-202ENST00000639725 4782 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.591e-18■■□□□ 12.5
DDX55Q8NHQ9 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.045e-12■■□□□ 12.5
DDX55Q8NHQ9 PFDN5-205ENST00000547228 726 ntTSL 57.39□□□□□ -1.232e-11■■□□□ 12.5
DDX55Q8NHQ9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC25.11■■□□□ 1.611e-6■■□□□ 12.5
DDX55Q8NHQ9 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.481e-6■■□□□ 12.5
DDX55Q8NHQ9 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.812e-35■■□□□ 12.5
DDX55Q8NHQ9 SF1-214ENST00000477596 802 ntTSL 227.21■■□□□ 1.951e-14■■□□□ 12.5
DDX55Q8NHQ9 SF1-216ENST00000486867 875 ntTSL 315.98■□□□□ 0.151e-14■■□□□ 12.5
DDX55Q8NHQ9 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.021e-14■■□□□ 12.5
DDX55Q8NHQ9 SAMD4B-206ENST00000596368 1176 ntTSL 5 BASIC13.72□□□□□ -0.211e-14■■□□□ 12.5
DDX55Q8NHQ9 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.783e-11■■□□□ 12.5
DDX55Q8NHQ9 NEDD8-MDP1-204ENST00000605847 758 ntTSL 519.65■□□□□ 0.743e-11■■□□□ 12.5
DDX55Q8NHQ9 NEDD8-MDP1-202ENST00000534348 595 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.293e-11■■□□□ 12.5
DDX55Q8NHQ9 NEDD8-206ENST00000531430 651 ntTSL 211.67□□□□□ -0.543e-11■■□□□ 12.5
DDX55Q8NHQ9 RNA5SP370-201ENST00000362545 121 ntBASIC12.95□□□□□ -0.346e-17■■□□□ 12.5
DDX55Q8NHQ9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC32.39■■■□□ 2.782e-7■■□□□ 12.5
DDX55Q8NHQ9 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.592e-6■■□□□ 12.5
DDX55Q8NHQ9 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.392e-6■■□□□ 12.5
DDX55Q8NHQ9 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.322e-6■■□□□ 12.5
DDX55Q8NHQ9 METTL17-216ENST00000555533 1605 ntTSL 1 (best)15.31■□□□□ 0.042e-6■■□□□ 12.5
DDX55Q8NHQ9 METTL17-224ENST00000557550 1529 ntTSL 513.25□□□□□ -0.292e-6■■□□□ 12.5
DDX55Q8NHQ9 METTL17-217ENST00000555640 2887 ntTSL 511.97□□□□□ -0.492e-6■■□□□ 12.5
DDX55Q8NHQ9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.111e-6■■□□□ 12.4
DDX55Q8NHQ9 PGAM1-202ENST00000467867 1187 ntTSL 214.62□□□□□ -0.071e-6■■□□□ 12.4
DDX55Q8NHQ9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.44■■□□□ 1.668e-7■■□□□ 12.4
DDX55Q8NHQ9 UXS1-215ENST00000497604 2907 ntTSL 28.2□□□□□ -1.18e-7■■□□□ 12.4
DDX55Q8NHQ9 CD74-212ENST00000524315 584 ntTSL 5 BASIC18.74■□□□□ 0.596e-10■■□□□ 12.4
DDX55Q8NHQ9 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.491e-7■■□□□ 12.4
DDX55Q8NHQ9 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.381e-7■■□□□ 12.4
DDX55Q8NHQ9 PTPRM-205ENST00000577827 4640 ntTSL 211.41□□□□□ -0.581e-7■■□□□ 12.4
DDX55Q8NHQ9 PTPRM-203ENST00000400060 5030 ntTSL 5 BASIC11.31□□□□□ -0.61e-7■■□□□ 12.4
DDX55Q8NHQ9 PTPRM-202ENST00000400053 5292 ntAPPRIS ALT2 TSL 5 BASIC9.9□□□□□ -0.831e-7■■□□□ 12.4
DDX55Q8NHQ9 PTPRM-213ENST00000580949 687 ntTSL 37.06□□□□□ -1.281e-7■■□□□ 12.4
DDX55Q8NHQ9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.64e-7■■□□□ 12.4
DDX55Q8NHQ9 SF1-211ENST00000448404 2778 ntTSL 1 (best)15.92■□□□□ 0.144e-7■■□□□ 12.4
DDX55Q8NHQ9 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.064e-7■■□□□ 12.4
DDX55Q8NHQ9 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.65□□□□□ -0.064e-7■■□□□ 12.4
DDX55Q8NHQ9 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC14.31□□□□□ -0.124e-7■■□□□ 12.4
DDX55Q8NHQ9 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.374e-7■■□□□ 12.4
DDX55Q8NHQ9 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.02■□□□□ 0.632e-24■■□□□ 12.4
DDX55Q8NHQ9 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.022e-24■■□□□ 12.4
DDX55Q8NHQ9 RN7SL2-201ENST00000490232 300 ntBASIC15.72■□□□□ 0.111e-323■■□□□ 12.4
DDX55Q8NHQ9 AL627171.2-202ENST00000634923 923 ntTSL 5 BASIC11.94□□□□□ -0.51e-323■■□□□ 12.4
DDX55Q8NHQ9 AL627171.2-201ENST00000635177 1090 ntTSL 5 BASIC11.88□□□□□ -0.511e-323■■□□□ 12.4
DDX55Q8NHQ9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.641e-10■■□□□ 12.4
DDX55Q8NHQ9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.391e-10■■□□□ 12.4
DDX55Q8NHQ9 CLSTN1-205ENST00000477264 2169 ntTSL 216.15■□□□□ 0.181e-10■■□□□ 12.4
DDX55Q8NHQ9 CLSTN1-203ENST00000435891 3829 ntTSL 210.94□□□□□ -0.661e-10■■□□□ 12.4
DDX55Q8NHQ9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.87■■□□□ 1.093e-7■■□□□ 12.4
DDX55Q8NHQ9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.733e-7■■□□□ 12.4
DDX55Q8NHQ9 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.6■□□□□ 0.413e-7■■□□□ 12.4
DDX55Q8NHQ9 KIF22-202ENST00000400751 2493 ntTSL 2 BASIC13.29□□□□□ -0.283e-7■■□□□ 12.4
DDX55Q8NHQ9 C2orf82-208ENST00000481155 660 ntTSL 327.21■■□□□ 1.952e-7■■□□□ 12.4
DDX55Q8NHQ9 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.647e-30■■□□□ 12.4
DDX55Q8NHQ9 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.357e-30■■□□□ 12.4
DDX55Q8NHQ9 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.017e-30■■□□□ 12.4
Retrieved 100 of 15,504 protein–RNA pairs in 149.3 ms