RNA–Protein interactions for RNA: ENST00000400060.8

PTPRM-203, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 5 BASIC

Gene PTPRM, Length 5,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-203ENST00000400060 PELP1Q8IZL8 1130 aaKnown RBP17.13■□□□□ 0.33
PTPRM-203ENST00000400060 MYT1Q01538 1121 aa17.06■□□□□ 0.32
PTPRM-203ENST00000400060 NISCHQ9Y2I1 1504 aa16.56■□□□□ 0.24
PTPRM-203ENST00000400060 TTBK1Q5TCY1 1321 aaPredicted RBP15.91■□□□□ 0.14
PTPRM-203ENST00000400060 ZEB1P37275 1124 aaPredicted RBP15.91■□□□□ 0.14
PTPRM-203ENST00000400060 HRCP23327 699 aa15.88■□□□□ 0.13
PTPRM-203ENST00000400060 DCAF8L2P0C7V8 631 aa15.86■□□□□ 0.13
PTPRM-203ENST00000400060 CENPBP07199 599 aaPredicted RBP15.78■□□□□ 0.12
PTPRM-203ENST00000400060 PCGF6Q9BYE7 350 aa15.58■□□□□ 0.08
PTPRM-203ENST00000400060 SUPT5HO00267 1087 aaKnown RBP15.46■□□□□ 0.07
PTPRM-203ENST00000400060 SHROOM4Q9ULL8 1493 aa15.29■□□□□ 0.04
PTPRM-203ENST00000400060 CCER1Q8TC90 406 aaPredicted RBP15.23■□□□□ 0.03
PTPRM-203ENST00000400060 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.03
PTPRM-203ENST00000400060 ERICH6Q7L0X2 663 aa15.16■□□□□ 0.02
PTPRM-203ENST00000400060 PPARGC1BQ86YN6 1023 aaKnown RBP15.01□□□□□ -0.01
PTPRM-203ENST00000400060 ACIN1Q9UKV3 1341 aaKnown RBP14.96□□□□□ -0.01
PTPRM-203ENST00000400060 CLSPNQ9HAW4 1339 aa14.9□□□□□ -0.02
PTPRM-203ENST00000400060 GTF3C3Q9Y5Q9 886 aa14.87□□□□□ -0.03
PTPRM-203ENST00000400060 NEFLP07196 543 aa14.82□□□□□ -0.04
PTPRM-203ENST00000400060 SCAF1Q9H7N4 1312 aaKnown RBP14.82□□□□□ -0.04
PTPRM-203ENST00000400060 DCAF1Q9Y4B6 1507 aa14.79□□□□□ -0.04
PTPRM-203ENST00000400060 MYT1LQ9UL68 1186 aa14.74□□□□□ -0.05
PTPRM-203ENST00000400060 DIEXFQ68CQ4 756 aaKnown RBP14.73□□□□□ -0.05
PTPRM-203ENST00000400060 YTHDC1Q96MU7 727 aaKnown RBP14.71□□□□□ -0.06
PTPRM-203ENST00000400060 CHIC1Q5VXU3 224 aa14.69□□□□□ -0.06
PTPRM-203ENST00000400060 CCDC180Q9P1Z9 1646 aa14.56□□□□□ -0.08
PTPRM-203ENST00000400060 EHMT2Q96KQ7 1210 aa14.54□□□□□ -0.08
PTPRM-203ENST00000400060 APLP2Q06481 763 aa14.51□□□□□ -0.09
PTPRM-203ENST00000400060 ANP32EQ9BTT0 268 aa14.5□□□□□ -0.09
PTPRM-203ENST00000400060 BCL11AQ9H165 835 aa14.47□□□□□ -0.09
PTPRM-203ENST00000400060 NEUROD1Q13562 356 aa14.47□□□□□ -0.09
PTPRM-203ENST00000400060 FAM9AQ8IZU1 332 aaPredicted RBP14.45□□□□□ -0.1
PTPRM-203ENST00000400060 RTL5Q5HYW3 569 aaPredicted RBP14.44□□□□□ -0.1
PTPRM-203ENST00000400060 TRIM41Q8WV44 630 aa14.44□□□□□ -0.1
PTPRM-203ENST00000400060 ZNF316A6NFI3 1004 aaPredicted RBP14.39□□□□□ -0.11
PTPRM-203ENST00000400060 LOC105371045A0A1W2PR82 267 aa14.29□□□□□ -0.12
PTPRM-203ENST00000400060 GLIPR1L2Q4G1C9 344 aa14.28□□□□□ -0.12
PTPRM-203ENST00000400060 CDK11AQ9UQ88 783 aaPredicted RBP14.24□□□□□ -0.13
PTPRM-203ENST00000400060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.21□□□□□ -0.13
PTPRM-203ENST00000400060 DAXXQ9UER7 740 aaPredicted RBP14.13□□□□□ -0.15
PTPRM-203ENST00000400060 UBTFP17480 764 aaKnown RBP14.06□□□□□ -0.16
PTPRM-203ENST00000400060 MYO15BQ96JP2 1530 aa14.03□□□□□ -0.16
PTPRM-203ENST00000400060 ERICH6BQ5W0A0 696 aa13.99□□□□□ -0.17
PTPRM-203ENST00000400060 ANP32AP39687 249 aaKnown RBP13.99□□□□□ -0.17
PTPRM-203ENST00000400060 BCANQ96GW7 911 aa13.97□□□□□ -0.17
PTPRM-203ENST00000400060 RANGAP1P46060 587 aaPredicted RBP13.91□□□□□ -0.18
PTPRM-203ENST00000400060 FKBP8Q14318 412 aa13.9□□□□□ -0.18
PTPRM-203ENST00000400060 EIF5BO60841 1220 aaKnown RBP13.89□□□□□ -0.19
PTPRM-203ENST00000400060 SUPT16HQ9Y5B9 1047 aaKnown RBP13.89□□□□□ -0.19
PTPRM-203ENST00000400060 CSRNP3Q8WYN3 585 aa13.88□□□□□ -0.19
PTPRM-203ENST00000400060 PRKCSHP14314 528 aaPredicted RBP13.87□□□□□ -0.19
PTPRM-203ENST00000400060 ANP32CO43423 234 aa13.85□□□□□ -0.19
PTPRM-203ENST00000400060 MIER1Q8N108 512 aa13.84□□□□□ -0.19
PTPRM-203ENST00000400060 ZCCHC6Q5VYS8 1495 aaKnown RBP13.82□□□□□ -0.2
PTPRM-203ENST00000400060 HNRNPUL2Q1KMD3 747 aaKnown RBP13.81□□□□□ -0.2
PTPRM-203ENST00000400060 TSHZ2Q9NRE2 1034 aa13.78□□□□□ -0.2
PTPRM-203ENST00000400060 ZBTB47Q9UFB7 747 aaPredicted RBP13.75□□□□□ -0.21
PTPRM-203ENST00000400060 DEKP35659 375 aaKnown RBP13.75□□□□□ -0.21
PTPRM-203ENST00000400060 ATP1B4Q9UN42 357 aaPredicted RBP13.74□□□□□ -0.21
PTPRM-203ENST00000400060 RBM19Q9Y4C8 960 aaKnown RBP13.69□□□□□ -0.22
PTPRM-203ENST00000400060 ABCC9O60706 1549 aa13.67□□□□□ -0.22
PTPRM-203ENST00000400060 NBR1Q14596 966 aa13.66□□□□□ -0.22
PTPRM-203ENST00000400060 NOP58Q9Y2X3 529 aaKnown RBP13.65□□□□□ -0.22
PTPRM-203ENST00000400060 PPM1GO15355 546 aaPredicted RBP13.65□□□□□ -0.22
PTPRM-203ENST00000400060 DDRGK1Q96HY6 314 aa13.6□□□□□ -0.23
PTPRM-203ENST00000400060 FANCIQ9NVI1 1328 aa13.59□□□□□ -0.23
PTPRM-203ENST00000400060 PPP4R2Q9NY27 417 aa13.52□□□□□ -0.24
PTPRM-203ENST00000400060 NEFMP07197 916 aa13.52□□□□□ -0.25
PTPRM-203ENST00000400060 RSPH6AQ9H0K4 717 aa13.51□□□□□ -0.25
PTPRM-203ENST00000400060 ITGAEP38570 1179 aa13.47□□□□□ -0.25
PTPRM-203ENST00000400060 USP35Q9P2H5 1018 aa13.46□□□□□ -0.25
PTPRM-203ENST00000400060 NCLP19338 710 aaKnown RBP13.46□□□□□ -0.26
PTPRM-203ENST00000400060 ANP32BQ92688 251 aaKnown RBP13.46□□□□□ -0.26
PTPRM-203ENST00000400060 PABPN1Q86U42 306 aaKnown RBP eCLIP13.45□□□□□ -0.26
PTPRM-203ENST00000400060 HNRNPUQ00839 825 aaKnown RBP eCLIP13.44□□□□□ -0.26
PTPRM-203ENST00000400060 CCER2I3L3R5 266 aa13.44□□□□□ -0.26
PTPRM-203ENST00000400060 CCDC136Q96JN2 1154 aa13.43□□□□□ -0.26
PTPRM-203ENST00000400060 SLC24A1O60721 1099 aa13.43□□□□□ -0.26
PTPRM-203ENST00000400060 NPM2Q86SE8 214 aaKnown RBP13.42□□□□□ -0.26
PTPRM-203ENST00000400060 TNNT2P45379 298 aaPredicted RBP13.42□□□□□ -0.26
PTPRM-203ENST00000400060 SCRIBQ14160 1630 aa13.41□□□□□ -0.26
PTPRM-203ENST00000400060 EEA1Q15075 1411 aa13.39□□□□□ -0.27
PTPRM-203ENST00000400060 UBE2Q2Q8WVN8 375 aa13.38□□□□□ -0.27
PTPRM-203ENST00000400060 L1TD1Q5T7N2 865 aaKnown RBP13.36□□□□□ -0.27
PTPRM-203ENST00000400060 RTN4Q9NQC3 1192 aaKnown RBP13.36□□□□□ -0.27
PTPRM-203ENST00000400060 PKNOX2Q96KN3 472 aa13.36□□□□□ -0.27
PTPRM-203ENST00000400060 DDX10Q13206 875 aaKnown RBP13.35□□□□□ -0.27
PTPRM-203ENST00000400060 HSP90AA1P07900 732 aaKnown RBP13.34□□□□□ -0.27
PTPRM-203ENST00000400060 TRIM52Q96A61 297 aa13.34□□□□□ -0.27
PTPRM-203ENST00000400060 NAP1L5Q96NT1 182 aaPredicted RBP13.32□□□□□ -0.28
PTPRM-203ENST00000400060 TRIM44Q96DX7 344 aaPredicted RBP13.31□□□□□ -0.28
PTPRM-203ENST00000400060 IPO9Q96P70 1041 aaKnown RBP13.31□□□□□ -0.28
PTPRM-203ENST00000400060 CEP162Q5TB80 1403 aa13.29□□□□□ -0.28
PTPRM-203ENST00000400060 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.28□□□□□ -0.28
PTPRM-203ENST00000400060 TNIKQ9UKE5 1360 aa13.28□□□□□ -0.28
PTPRM-203ENST00000400060 BECN1Q14457 450 aa13.28□□□□□ -0.28
PTPRM-203ENST00000400060 UPF2Q9HAU5 1272 aaKnown RBP13.28□□□□□ -0.28
PTPRM-203ENST00000400060 TIMELESSQ9UNS1 1208 aa13.26□□□□□ -0.29
PTPRM-203ENST00000400060 TONSLQ96HA7 1378 aa13.26□□□□□ -0.29
PTPRM-203ENST00000400060 RSF1Q96T23 1441 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms