RNA–Protein interactions for RNA: ENST00000580949.1

PTPRM-213, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 3

Gene PTPRM, Length 687 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-213ENST00000580949 AEBP2Q6ZN18 517 aaPredicted RBP21.36■■□□□ 1.01
PTPRM-213ENST00000580949 CHIC1Q5VXU3 224 aa20.91■□□□□ 0.94
PTPRM-213ENST00000580949 PHF23Q9BUL5 403 aaPredicted RBP18.36■□□□□ 0.53
PTPRM-213ENST00000580949 SENP3Q9H4L4 574 aaPredicted RBP18.16■□□□□ 0.5
PTPRM-213ENST00000580949 PLPPR3Q6T4P5 718 aa16.99■□□□□ 0.31
PTPRM-213ENST00000580949 FOXD1Q16676 465 aa16.83■□□□□ 0.28
PTPRM-213ENST00000580949 PPP6R1Q9UPN7 881 aa16.19■□□□□ 0.18
PTPRM-213ENST00000580949 ADRA2BP18089 450 aa16.17■□□□□ 0.18
PTPRM-213ENST00000580949 PIAS4Q8N2W9 510 aaPredicted RBP15.87■□□□□ 0.13
PTPRM-213ENST00000580949 MSH5O43196 834 aa15.55■□□□□ 0.08
PTPRM-213ENST00000580949 PPP4R3CPQ6ZMV5 832 aa14.96□□□□□ -0.01
PTPRM-213ENST00000580949 SCAF1Q9H7N4 1312 aaKnown RBP14.84□□□□□ -0.03
PTPRM-213ENST00000580949 MAPK8IP2Q13387 824 aaPredicted RBP14.65□□□□□ -0.06
PTPRM-213ENST00000580949 KCNA4P22459 653 aa14.61□□□□□ -0.07
PTPRM-213ENST00000580949 NCBP3Q53F19 620 aaKnown RBP14.59□□□□□ -0.07
PTPRM-213ENST00000580949 CNKSR2Q8WXI2 1034 aa14.55□□□□□ -0.08
PTPRM-213ENST00000580949 DMRT2Q9Y5R5 561 aa14.5□□□□□ -0.09
PTPRM-213ENST00000580949 NPM3O75607 178 aaKnown RBP14.35□□□□□ -0.11
PTPRM-213ENST00000580949 RNF216Q9NWF9 866 aaPredicted RBP14.27□□□□□ -0.13
PTPRM-213ENST00000580949 HOXD11P31277 338 aaPredicted RBP14.21□□□□□ -0.13
PTPRM-213ENST00000580949 POTEDQ86YR6 584 aa14.1□□□□□ -0.15
PTPRM-213ENST00000580949 NISCHQ9Y2I1 1504 aa14.08□□□□□ -0.16
PTPRM-213ENST00000580949 DNAJC5BQ9UF47 199 aa14.01□□□□□ -0.17
PTPRM-213ENST00000580949 SLC4A1APQ9BWU0 796 aaKnown RBP13.92□□□□□ -0.18
PTPRM-213ENST00000580949 DCAF8L1A6NGE4 600 aa13.82□□□□□ -0.2
PTPRM-213ENST00000580949 SLC4A2P04920 1241 aa13.55□□□□□ -0.24
PTPRM-213ENST00000580949 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.52□□□□□ -0.25
PTPRM-213ENST00000580949 EHMT2Q96KQ7 1210 aa13.5□□□□□ -0.25
PTPRM-213ENST00000580949 FOXD4L1Q9NU39 408 aa13.47□□□□□ -0.25
PTPRM-213ENST00000580949 ZBTB22O15209 634 aa13.43□□□□□ -0.26
PTPRM-213ENST00000580949 CSRNP3Q8WYN3 585 aa13.38□□□□□ -0.27
PTPRM-213ENST00000580949 RNF39Q9H2S5 420 aa13.31□□□□□ -0.28
PTPRM-213ENST00000580949 U3KPZ7 1027 aaPredicted RBP13.3□□□□□ -0.28
PTPRM-213ENST00000580949 MYCNP04198 464 aaPredicted RBP13.28□□□□□ -0.28
PTPRM-213ENST00000580949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.17□□□□□ -0.3
PTPRM-213ENST00000580949 C1QBPQ07021 282 aaKnown RBP13.17□□□□□ -0.3
PTPRM-213ENST00000580949 HNRNPUL2Q1KMD3 747 aaKnown RBP13.17□□□□□ -0.3
PTPRM-213ENST00000580949 SAMD1Q6SPF0 538 aaPredicted RBP13.12□□□□□ -0.31
PTPRM-213ENST00000580949 APLP2Q06481 763 aa13.05□□□□□ -0.32
PTPRM-213ENST00000580949 ATXN8OSP0DMR3 200 aa13.03□□□□□ -0.32
PTPRM-213ENST00000580949 CACNB1Q02641 598 aaPredicted RBP12.94□□□□□ -0.34
PTPRM-213ENST00000580949 SPINK5Q9NQ38 1064 aaPredicted RBP12.9□□□□□ -0.34
PTPRM-213ENST00000580949 ATF5Q9Y2D1 282 aaPredicted RBP12.88□□□□□ -0.35
PTPRM-213ENST00000580949 CAPN15O75808 1086 aa12.86□□□□□ -0.35
PTPRM-213ENST00000580949 ZNF219Q9P2Y4 722 aaPredicted RBP12.84□□□□□ -0.35
PTPRM-213ENST00000580949 TRHP20396 242 aaPredicted RBP12.79□□□□□ -0.36
PTPRM-213ENST00000580949 DSG3P32926 999 aa12.66□□□□□ -0.38
PTPRM-213ENST00000580949 ABCB7O75027 752 aa12.6□□□□□ -0.39
PTPRM-213ENST00000580949 POLA2Q14181 598 aa12.6□□□□□ -0.39
PTPRM-213ENST00000580949 ZBTB12Q9Y330 459 aaPredicted RBP12.45□□□□□ -0.42
PTPRM-213ENST00000580949 FBLN2P98095 1184 aa12.38□□□□□ -0.43
PTPRM-213ENST00000580949 MKRN4PQ13434 485 aaPredicted RBP12.34□□□□□ -0.43
PTPRM-213ENST00000580949 OSCARQ8IYS5 282 aa12.17□□□□□ -0.46
PTPRM-213ENST00000580949 CCDC180Q9P1Z9 1646 aa12.17□□□□□ -0.46
PTPRM-213ENST00000580949 SPDYE2BA6NHP3 402 aa12.1□□□□□ -0.47
PTPRM-213ENST00000580949 SPDYE6P0CI01 402 aa12.1□□□□□ -0.47
PTPRM-213ENST00000580949 SPDYE2Q495Y8 402 aa12.1□□□□□ -0.47
PTPRM-213ENST00000580949 RBM42Q9BTD8 480 aaKnown RBP12.09□□□□□ -0.47
PTPRM-213ENST00000580949 SPDYE4A6NLX3 237 aa12.08□□□□□ -0.48
PTPRM-213ENST00000580949 FKBP8Q14318 412 aa12.08□□□□□ -0.48
PTPRM-213ENST00000580949 ZNF692Q9BU19 519 aaPredicted RBP12.02□□□□□ -0.49
PTPRM-213ENST00000580949 SSUH2Q9Y2M2 353 aa12.01□□□□□ -0.49
PTPRM-213ENST00000580949 AKT1S1Q96B36 256 aa11.94□□□□□ -0.5
PTPRM-213ENST00000580949 PROM2Q8N271 834 aa11.91□□□□□ -0.5
PTPRM-213ENST00000580949 PABPN1Q86U42 306 aaKnown RBP eCLIP11.86□□□□□ -0.51
PTPRM-213ENST00000580949 REM2Q8IYK8 340 aaPredicted RBP11.81□□□□□ -0.52
PTPRM-213ENST00000580949 ZCCHC6Q5VYS8 1495 aaKnown RBP11.81□□□□□ -0.52
PTPRM-213ENST00000580949 SPDYE1Q8NFV5 336 aaPredicted RBP11.74□□□□□ -0.53
PTPRM-213ENST00000580949 STAG3Q9UJ98 1225 aa11.71□□□□□ -0.53
PTPRM-213ENST00000580949 FBXO3Q9UK99 471 aa11.7□□□□□ -0.54
PTPRM-213ENST00000580949 DCAF8L2P0C7V8 631 aa11.69□□□□□ -0.54
PTPRM-213ENST00000580949 PITPNM1O00562 1244 aa11.66□□□□□ -0.54
PTPRM-213ENST00000580949 ABCC9O60706 1549 aa11.64□□□□□ -0.55
PTPRM-213ENST00000580949 CLEC11AQ9Y240 323 aa11.63□□□□□ -0.55
PTPRM-213ENST00000580949 DCAF1Q9Y4B6 1507 aa11.6□□□□□ -0.55
PTPRM-213ENST00000580949 PRR29P0C7W0 189 aa11.56□□□□□ -0.56
PTPRM-213ENST00000580949 CHRDL2Q6WN34 429 aa11.56□□□□□ -0.56
PTPRM-213ENST00000580949 SHROOM4Q9ULL8 1493 aa11.53□□□□□ -0.56
PTPRM-213ENST00000580949 VASPP50552 380 aaPredicted RBP11.51□□□□□ -0.57
PTPRM-213ENST00000580949 MYO15BQ96JP2 1530 aa11.46□□□□□ -0.57
PTPRM-213ENST00000580949 FXR2P51116 673 aaKnown RBP eCLIP11.46□□□□□ -0.57
PTPRM-213ENST00000580949 MIER1Q8N108 512 aa11.44□□□□□ -0.58
PTPRM-213ENST00000580949 PLCD3Q8N3E9 789 aa11.43□□□□□ -0.58
PTPRM-213ENST00000580949 CREBZFQ9NS37 354 aa11.42□□□□□ -0.58
PTPRM-213ENST00000580949 PLEKHG5O94827 1062 aa11.41□□□□□ -0.58
PTPRM-213ENST00000580949 PIP4P2Q8N4L2 257 aa11.41□□□□□ -0.58
PTPRM-213ENST00000580949 NACADO15069 1562 aa11.39□□□□□ -0.59
PTPRM-213ENST00000580949 PRKAR2AP13861 404 aaKnown RBP11.37□□□□□ -0.59
PTPRM-213ENST00000580949 CHADLQ6NUI6 762 aa11.34□□□□□ -0.59
PTPRM-213ENST00000580949 IFNLR1Q8IU57 520 aaPredicted RBP11.34□□□□□ -0.59
PTPRM-213ENST00000580949 ZBTB47Q9UFB7 747 aaPredicted RBP11.34□□□□□ -0.59
PTPRM-213ENST00000580949 MNX1P50219 401 aaPredicted RBP11.31□□□□□ -0.6
PTPRM-213ENST00000580949 KLHL34Q8N239 644 aa11.3□□□□□ -0.6
PTPRM-213ENST00000580949 RB1CC1Q8TDY2 1594 aa11.28□□□□□ -0.6
PTPRM-213ENST00000580949 FARP1Q9Y4F1 1045 aaPredicted RBP11.27□□□□□ -0.61
PTPRM-213ENST00000580949 SCRIBQ14160 1630 aa11.26□□□□□ -0.61
PTPRM-213ENST00000580949 NPM1P06748 294 aaKnown RBP eCLIP11.25□□□□□ -0.61
PTPRM-213ENST00000580949 SPOCK2Q92563 424 aa11.23□□□□□ -0.61
PTPRM-213ENST00000580949 POTEHQ6S545 545 aa11.18□□□□□ -0.62
PTPRM-213ENST00000580949 NUBP1P53384 320 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms