RNA–Protein interactions for RNA: ENST00000577827.5

PTPRM-205, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 2

Gene PTPRM, Length 4,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-205ENST00000577827 NISCHQ9Y2I1 1504 aa17.95■□□□□ 0.46
PTPRM-205ENST00000577827 DCAF8L2P0C7V8 631 aa17.17■□□□□ 0.34
PTPRM-205ENST00000577827 SUPT5HO00267 1087 aaKnown RBP17.05■□□□□ 0.32
PTPRM-205ENST00000577827 SHROOM4Q9ULL8 1493 aa16.75■□□□□ 0.27
PTPRM-205ENST00000577827 PCGF6Q9BYE7 350 aa16.37■□□□□ 0.21
PTPRM-205ENST00000577827 ZEB1P37275 1124 aaPredicted RBP16.28■□□□□ 0.2
PTPRM-205ENST00000577827 PELP1Q8IZL8 1130 aaKnown RBP16.27■□□□□ 0.2
PTPRM-205ENST00000577827 HRCP23327 699 aa16.08■□□□□ 0.16
PTPRM-205ENST00000577827 CENPBP07199 599 aaPredicted RBP16.03■□□□□ 0.16
PTPRM-205ENST00000577827 EHMT2Q96KQ7 1210 aa16.01■□□□□ 0.15
PTPRM-205ENST00000577827 MYT1Q01538 1121 aa15.97■□□□□ 0.15
PTPRM-205ENST00000577827 FAM9AQ8IZU1 332 aaPredicted RBP15.92■□□□□ 0.14
PTPRM-205ENST00000577827 APLP2Q06481 763 aa15.91■□□□□ 0.14
PTPRM-205ENST00000577827 TRIM41Q8WV44 630 aa15.89■□□□□ 0.13
PTPRM-205ENST00000577827 TRIM26Q12899 539 aaPredicted RBP15.88■□□□□ 0.13
PTPRM-205ENST00000577827 CCER1Q8TC90 406 aaPredicted RBP15.82■□□□□ 0.12
PTPRM-205ENST00000577827 CHIC1Q5VXU3 224 aa15.79■□□□□ 0.12
PTPRM-205ENST00000577827 TTBK1Q5TCY1 1321 aaPredicted RBP15.59■□□□□ 0.09
PTPRM-205ENST00000577827 LOC105371045A0A1W2PR82 267 aa15.52■□□□□ 0.07
PTPRM-205ENST00000577827 PPARGC1BQ86YN6 1023 aaKnown RBP15.5■□□□□ 0.07
PTPRM-205ENST00000577827 UBTFP17480 764 aaKnown RBP15.47■□□□□ 0.07
PTPRM-205ENST00000577827 ERICH6Q7L0X2 663 aa15.39■□□□□ 0.05
PTPRM-205ENST00000577827 YTHDC1Q96MU7 727 aaKnown RBP15.39■□□□□ 0.05
PTPRM-205ENST00000577827 NEFLP07196 543 aa15.35■□□□□ 0.05
PTPRM-205ENST00000577827 DIEXFQ68CQ4 756 aaKnown RBP15.25■□□□□ 0.03
PTPRM-205ENST00000577827 RANGAP1P46060 587 aaPredicted RBP15.23■□□□□ 0.03
PTPRM-205ENST00000577827 DCAF1Q9Y4B6 1507 aa15.18■□□□□ 0.02
PTPRM-205ENST00000577827 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.16■□□□□ 0.02
PTPRM-205ENST00000577827 HNRNPUL2Q1KMD3 747 aaKnown RBP15.05■□□□□ 0
PTPRM-205ENST00000577827 GTF3C3Q9Y5Q9 886 aa15.05■□□□□ 0
PTPRM-205ENST00000577827 ACIN1Q9UKV3 1341 aaKnown RBP15.04■□□□□ -0
PTPRM-205ENST00000577827 ATP1B4Q9UN42 357 aaPredicted RBP15.02■□□□□ -0
PTPRM-205ENST00000577827 ZCCHC6Q5VYS8 1495 aaKnown RBP15.02□□□□□ -0.01
PTPRM-205ENST00000577827 ZNF316A6NFI3 1004 aaPredicted RBP14.95□□□□□ -0.02
PTPRM-205ENST00000577827 CLSPNQ9HAW4 1339 aa14.85□□□□□ -0.03
PTPRM-205ENST00000577827 ITGAEP38570 1179 aa14.85□□□□□ -0.03
PTPRM-205ENST00000577827 MYO15BQ96JP2 1530 aa14.77□□□□□ -0.05
PTPRM-205ENST00000577827 CCDC180Q9P1Z9 1646 aa14.73□□□□□ -0.05
PTPRM-205ENST00000577827 SCAF1Q9H7N4 1312 aaKnown RBP14.72□□□□□ -0.05
PTPRM-205ENST00000577827 CSRNP3Q8WYN3 585 aa14.72□□□□□ -0.05
PTPRM-205ENST00000577827 NEUROD1Q13562 356 aa14.67□□□□□ -0.06
PTPRM-205ENST00000577827 DAXXQ9UER7 740 aaPredicted RBP14.66□□□□□ -0.06
PTPRM-205ENST00000577827 ANP32CO43423 234 aa14.64□□□□□ -0.07
PTPRM-205ENST00000577827 RTL5Q5HYW3 569 aaPredicted RBP14.63□□□□□ -0.07
PTPRM-205ENST00000577827 CDK11AQ9UQ88 783 aaPredicted RBP14.59□□□□□ -0.07
PTPRM-205ENST00000577827 FAM50AQ14320 339 aaKnown RBP14.58□□□□□ -0.08
PTPRM-205ENST00000577827 BCANQ96GW7 911 aa14.57□□□□□ -0.08
PTPRM-205ENST00000577827 ABCC9O60706 1549 aa14.55□□□□□ -0.08
PTPRM-205ENST00000577827 POLR3GLQ9BT43 218 aa14.52□□□□□ -0.08
PTPRM-205ENST00000577827 SCRIBQ14160 1630 aa14.49□□□□□ -0.09
PTPRM-205ENST00000577827 RSF1Q96T23 1441 aaPredicted RBP14.44□□□□□ -0.1
PTPRM-205ENST00000577827 EEA1Q15075 1411 aa14.44□□□□□ -0.1
PTPRM-205ENST00000577827 MYT1LQ9UL68 1186 aa14.42□□□□□ -0.1
PTPRM-205ENST00000577827 MIER1Q8N108 512 aa14.41□□□□□ -0.1
PTPRM-205ENST00000577827 TRIM52Q96A61 297 aa14.4□□□□□ -0.1
PTPRM-205ENST00000577827 FKBP8Q14318 412 aa14.39□□□□□ -0.11
PTPRM-205ENST00000577827 PABPN1Q86U42 306 aaKnown RBP eCLIP14.36□□□□□ -0.11
PTPRM-205ENST00000577827 CNGB1Q14028 1251 aaPredicted RBP14.35□□□□□ -0.11
PTPRM-205ENST00000577827 CEP162Q5TB80 1403 aa14.34□□□□□ -0.11
PTPRM-205ENST00000577827 ANP32AP39687 249 aaKnown RBP14.31□□□□□ -0.12
PTPRM-205ENST00000577827 TNIKQ9UKE5 1360 aa14.31□□□□□ -0.12
PTPRM-205ENST00000577827 CLIP1P30622 1438 aa14.31□□□□□ -0.12
PTPRM-205ENST00000577827 GOLGA3Q08378 1498 aa14.3□□□□□ -0.12
PTPRM-205ENST00000577827 TONSLQ96HA7 1378 aa14.29□□□□□ -0.12
PTPRM-205ENST00000577827 RB1CC1Q8TDY2 1594 aa14.28□□□□□ -0.12
PTPRM-205ENST00000577827 DDX10Q13206 875 aaKnown RBP14.27□□□□□ -0.12
PTPRM-205ENST00000577827 HNRNPUQ00839 825 aaKnown RBP eCLIP14.23□□□□□ -0.13
PTPRM-205ENST00000577827 ANP32EQ9BTT0 268 aa14.19□□□□□ -0.14
PTPRM-205ENST00000577827 CEP164Q9UPV0 1460 aa14.16□□□□□ -0.14
PTPRM-205ENST00000577827 ZNF326Q5BKZ1 582 aaKnown RBP14.14□□□□□ -0.15
PTPRM-205ENST00000577827 P3H3Q8IVL6 736 aa14.13□□□□□ -0.15
PTPRM-205ENST00000577827 WRNQ14191 1432 aaPredicted RBP eCLIP14.11□□□□□ -0.15
PTPRM-205ENST00000577827 NACADO15069 1562 aa14.11□□□□□ -0.15
PTPRM-205ENST00000577827 SUPT16HQ9Y5B9 1047 aaKnown RBP14.08□□□□□ -0.15
PTPRM-205ENST00000577827 FAM9BQ8IZU0 186 aa14.06□□□□□ -0.16
PTPRM-205ENST00000577827 ZBTB47Q9UFB7 747 aaPredicted RBP14.06□□□□□ -0.16
PTPRM-205ENST00000577827 CCDC136Q96JN2 1154 aa14.05□□□□□ -0.16
PTPRM-205ENST00000577827 BAZ1AQ9NRL2 1556 aaPredicted RBP14.05□□□□□ -0.16
PTPRM-205ENST00000577827 NPM2Q86SE8 214 aaKnown RBP14.02□□□□□ -0.16
PTPRM-205ENST00000577827 MRS2Q9HD23 443 aa14.02□□□□□ -0.16
PTPRM-205ENST00000577827 TIMELESSQ9UNS1 1208 aa14.01□□□□□ -0.17
PTPRM-205ENST00000577827 SLC4A1APQ9BWU0 796 aaKnown RBP14□□□□□ -0.17
PTPRM-205ENST00000577827 EIF4G2P78344 907 aaKnown RBP eCLIP14□□□□□ -0.17
PTPRM-205ENST00000577827 MTUS2Q5JR59 1369 aa13.98□□□□□ -0.17
PTPRM-205ENST00000577827 CANXP27824 592 aaKnown RBP13.97□□□□□ -0.17
PTPRM-205ENST00000577827 TMC1Q8TDI8 760 aa13.97□□□□□ -0.17
PTPRM-205ENST00000577827 VPS8Q8N3P4 1428 aa13.96□□□□□ -0.17
PTPRM-205ENST00000577827 CECR2Q9BXF3 1484 aa13.95□□□□□ -0.18
PTPRM-205ENST00000577827 CCER2I3L3R5 266 aa13.94□□□□□ -0.18
PTPRM-205ENST00000577827 NBR1Q14596 966 aa13.94□□□□□ -0.18
PTPRM-205ENST00000577827 KIF27Q86VH2 1401 aa13.94□□□□□ -0.18
PTPRM-205ENST00000577827 CCNB3Q8WWL7 1395 aa13.93□□□□□ -0.18
PTPRM-205ENST00000577827 SOGA1O94964 1423 aa13.93□□□□□ -0.18
PTPRM-205ENST00000577827 PPP4R2Q9NY27 417 aa13.92□□□□□ -0.18
PTPRM-205ENST00000577827 IRX6P78412 446 aaPredicted RBP13.91□□□□□ -0.18
PTPRM-205ENST00000577827 HIRIP3Q9BW71 556 aaPredicted RBP13.91□□□□□ -0.18
PTPRM-205ENST00000577827 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.9□□□□□ -0.18
PTPRM-205ENST00000577827 UPF2Q9HAU5 1272 aaKnown RBP13.89□□□□□ -0.19
PTPRM-205ENST00000577827 CHIC2Q9UKJ5 165 aa13.87□□□□□ -0.19
PTPRM-205ENST00000577827 ERICH6BQ5W0A0 696 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 197.9 ms