RNA–Protein interactions for RNA: ENST00000361311.4

CLSTN1-201, Transcript of calsyntenin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLSTN1, Length 4,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-201ENST00000361311 NISCHQ9Y2I1 1504 aa27.25■■□□□ 1.95
CLSTN1-201ENST00000361311 SUPT5HO00267 1087 aaKnown RBP26.45■■□□□ 1.83
CLSTN1-201ENST00000361311 DCAF8L2P0C7V8 631 aa26.34■■□□□ 1.81
CLSTN1-201ENST00000361311 SHROOM4Q9ULL8 1493 aa26.01■■□□□ 1.75
CLSTN1-201ENST00000361311 PCGF6Q9BYE7 350 aa25.77■■□□□ 1.72
CLSTN1-201ENST00000361311 PELP1Q8IZL8 1130 aaKnown RBP25.5■■□□□ 1.67
CLSTN1-201ENST00000361311 HRCP23327 699 aa25.34■■□□□ 1.65
CLSTN1-201ENST00000361311 EHMT2Q96KQ7 1210 aa25.1■■□□□ 1.61
CLSTN1-201ENST00000361311 ZEB1P37275 1124 aaPredicted RBP25.06■■□□□ 1.6
CLSTN1-201ENST00000361311 MYT1Q01538 1121 aa24.88■■□□□ 1.57
CLSTN1-201ENST00000361311 CENPBP07199 599 aaPredicted RBP24.86■■□□□ 1.57
CLSTN1-201ENST00000361311 PPARGC1BQ86YN6 1023 aaKnown RBP24.83■■□□□ 1.57
CLSTN1-201ENST00000361311 FAM9AQ8IZU1 332 aaPredicted RBP24.77■■□□□ 1.56
CLSTN1-201ENST00000361311 TRIM26Q12899 539 aaPredicted RBP24.66■■□□□ 1.54
CLSTN1-201ENST00000361311 CHIC1Q5VXU3 224 aa24.59■■□□□ 1.53
CLSTN1-201ENST00000361311 CCER1Q8TC90 406 aaPredicted RBP24.57■■□□□ 1.52
CLSTN1-201ENST00000361311 TTBK1Q5TCY1 1321 aaPredicted RBP24.43■■□□□ 1.5
CLSTN1-201ENST00000361311 TRIM41Q8WV44 630 aa24.42■■□□□ 1.5
CLSTN1-201ENST00000361311 LOC105371045A0A1W2PR82 267 aa24.4■■□□□ 1.5
CLSTN1-201ENST00000361311 YTHDC1Q96MU7 727 aaKnown RBP24.26■■□□□ 1.47
CLSTN1-201ENST00000361311 APLP2Q06481 763 aa24.17■■□□□ 1.46
CLSTN1-201ENST00000361311 DIEXFQ68CQ4 756 aaKnown RBP23.87■■□□□ 1.41
CLSTN1-201ENST00000361311 GTF3C3Q9Y5Q9 886 aa23.85■■□□□ 1.41
CLSTN1-201ENST00000361311 ERICH6Q7L0X2 663 aa23.85■■□□□ 1.41
CLSTN1-201ENST00000361311 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.8■■□□□ 1.4
CLSTN1-201ENST00000361311 UBTFP17480 764 aaKnown RBP23.73■■□□□ 1.39
CLSTN1-201ENST00000361311 ACIN1Q9UKV3 1341 aaKnown RBP23.72■■□□□ 1.39
CLSTN1-201ENST00000361311 NEFLP07196 543 aa23.66■■□□□ 1.38
CLSTN1-201ENST00000361311 RANGAP1P46060 587 aaPredicted RBP23.62■■□□□ 1.37
CLSTN1-201ENST00000361311 SCAF1Q9H7N4 1312 aaKnown RBP23.6■■□□□ 1.37
CLSTN1-201ENST00000361311 DCAF1Q9Y4B6 1507 aa23.53■■□□□ 1.36
CLSTN1-201ENST00000361311 HNRNPUL2Q1KMD3 747 aaKnown RBP23.41■■□□□ 1.34
CLSTN1-201ENST00000361311 NEUROD1Q13562 356 aa23.36■■□□□ 1.33
CLSTN1-201ENST00000361311 MYO15BQ96JP2 1530 aa23.35■■□□□ 1.33
CLSTN1-201ENST00000361311 ZNF316A6NFI3 1004 aaPredicted RBP23.27■■□□□ 1.32
CLSTN1-201ENST00000361311 BCANQ96GW7 911 aa23.02■■□□□ 1.28
CLSTN1-201ENST00000361311 ABCC9O60706 1549 aa23.02■■□□□ 1.28
CLSTN1-201ENST00000361311 ITGAEP38570 1179 aa23.02■■□□□ 1.28
CLSTN1-201ENST00000361311 ATP1B4Q9UN42 357 aaPredicted RBP23.02■■□□□ 1.28
CLSTN1-201ENST00000361311 CCDC180Q9P1Z9 1646 aa22.88■■□□□ 1.25
CLSTN1-201ENST00000361311 ZCCHC6Q5VYS8 1495 aaKnown RBP22.83■■□□□ 1.25
CLSTN1-201ENST00000361311 CLSPNQ9HAW4 1339 aa22.81■■□□□ 1.24
CLSTN1-201ENST00000361311 MIER1Q8N108 512 aa22.72■■□□□ 1.23
CLSTN1-201ENST00000361311 RTL5Q5HYW3 569 aaPredicted RBP22.69■■□□□ 1.22
CLSTN1-201ENST00000361311 PABPN1Q86U42 306 aaKnown RBP eCLIP22.66■■□□□ 1.22
CLSTN1-201ENST00000361311 CDK11AQ9UQ88 783 aaPredicted RBP22.63■■□□□ 1.21
CLSTN1-201ENST00000361311 FKBP8Q14318 412 aa22.58■■□□□ 1.2
CLSTN1-201ENST00000361311 ANP32CO43423 234 aa22.56■■□□□ 1.2
CLSTN1-201ENST00000361311 CSRNP3Q8WYN3 585 aa22.53■■□□□ 1.2
CLSTN1-201ENST00000361311 DAXXQ9UER7 740 aaPredicted RBP22.53■■□□□ 1.2
CLSTN1-201ENST00000361311 ANP32EQ9BTT0 268 aa22.46■■□□□ 1.19
CLSTN1-201ENST00000361311 CNGB1Q14028 1251 aaPredicted RBP22.46■■□□□ 1.19
CLSTN1-201ENST00000361311 POLR3GLQ9BT43 218 aa22.45■■□□□ 1.18
CLSTN1-201ENST00000361311 FAM50AQ14320 339 aaKnown RBP22.4■■□□□ 1.18
CLSTN1-201ENST00000361311 DDX10Q13206 875 aaKnown RBP22.27■■□□□ 1.16
CLSTN1-201ENST00000361311 SUPT16HQ9Y5B9 1047 aaKnown RBP22.24■■□□□ 1.15
CLSTN1-201ENST00000361311 MYT1LQ9UL68 1186 aa22.22■■□□□ 1.15
CLSTN1-201ENST00000361311 TRIM52Q96A61 297 aa22.21■■□□□ 1.15
CLSTN1-201ENST00000361311 BCL11AQ9H165 835 aa22.19■■□□□ 1.14
CLSTN1-201ENST00000361311 ANP32AP39687 249 aaKnown RBP22.17■■□□□ 1.14
CLSTN1-201ENST00000361311 HNRNPUQ00839 825 aaKnown RBP eCLIP22.14■■□□□ 1.13
CLSTN1-201ENST00000361311 RSF1Q96T23 1441 aaPredicted RBP22.13■■□□□ 1.13
CLSTN1-201ENST00000361311 CEP162Q5TB80 1403 aa22.11■■□□□ 1.13
CLSTN1-201ENST00000361311 SCRIBQ14160 1630 aa22.08■■□□□ 1.12
CLSTN1-201ENST00000361311 NBR1Q14596 966 aa22.04■■□□□ 1.12
CLSTN1-201ENST00000361311 IRX6P78412 446 aaPredicted RBP21.99■■□□□ 1.11
CLSTN1-201ENST00000361311 NPM2Q86SE8 214 aaKnown RBP21.97■■□□□ 1.11
CLSTN1-201ENST00000361311 CLIP1P30622 1438 aa21.94■■□□□ 1.1
CLSTN1-201ENST00000361311 TSHZ2Q9NRE2 1034 aa21.93■■□□□ 1.1
CLSTN1-201ENST00000361311 EIF5BO60841 1220 aaKnown RBP21.92■■□□□ 1.1
CLSTN1-201ENST00000361311 TONSLQ96HA7 1378 aa21.91■■□□□ 1.1
CLSTN1-201ENST00000361311 TNIKQ9UKE5 1360 aa21.91■■□□□ 1.1
CLSTN1-201ENST00000361311 HIRIP3Q9BW71 556 aaPredicted RBP21.9■■□□□ 1.1
CLSTN1-201ENST00000361311 FAM9BQ8IZU0 186 aa21.88■■□□□ 1.09
CLSTN1-201ENST00000361311 ZBTB47Q9UFB7 747 aaPredicted RBP21.88■■□□□ 1.09
CLSTN1-201ENST00000361311 RBM19Q9Y4C8 960 aaKnown RBP21.85■■□□□ 1.09
CLSTN1-201ENST00000361311 EEA1Q15075 1411 aa21.82■■□□□ 1.08
CLSTN1-201ENST00000361311 GOLGA3Q08378 1498 aa21.82■■□□□ 1.08
CLSTN1-201ENST00000361311 ZNF326Q5BKZ1 582 aaKnown RBP21.81■■□□□ 1.08
CLSTN1-201ENST00000361311 CCDC136Q96JN2 1154 aa21.81■■□□□ 1.08
CLSTN1-201ENST00000361311 P3H3Q8IVL6 736 aa21.79■■□□□ 1.08
CLSTN1-201ENST00000361311 RB1CC1Q8TDY2 1594 aa21.76■■□□□ 1.07
CLSTN1-201ENST00000361311 MRS2Q9HD23 443 aa21.71■■□□□ 1.07
CLSTN1-201ENST00000361311 DEKP35659 375 aaKnown RBP21.61■■□□□ 1.05
CLSTN1-201ENST00000361311 PPP4R2Q9NY27 417 aa21.61■■□□□ 1.05
CLSTN1-201ENST00000361311 NOP58Q9Y2X3 529 aaKnown RBP21.58■■□□□ 1.05
CLSTN1-201ENST00000361311 CEP164Q9UPV0 1460 aa21.56■■□□□ 1.04
CLSTN1-201ENST00000361311 SOGA1O94964 1423 aa21.55■■□□□ 1.04
CLSTN1-201ENST00000361311 SIN3AQ96ST3 1273 aa21.55■■□□□ 1.04
CLSTN1-201ENST00000361311 FBLN2P98095 1184 aa21.54■■□□□ 1.04
CLSTN1-201ENST00000361311 SALL2Q9Y467 1007 aaPredicted RBP21.51■■□□□ 1.03
CLSTN1-201ENST00000361311 CCER2I3L3R5 266 aa21.51■■□□□ 1.03
CLSTN1-201ENST00000361311 TMC1Q8TDI8 760 aa21.51■■□□□ 1.03
CLSTN1-201ENST00000361311 B4GALNT3Q6L9W6 998 aa21.5■■□□□ 1.03
CLSTN1-201ENST00000361311 RTN4Q9NQC3 1192 aaKnown RBP21.5■■□□□ 1.03
CLSTN1-201ENST00000361311 EIF4G2P78344 907 aaKnown RBP eCLIP21.5■■□□□ 1.03
CLSTN1-201ENST00000361311 WRNQ14191 1432 aaPredicted RBP eCLIP21.49■■□□□ 1.03
CLSTN1-201ENST00000361311 GLIPR1L2Q4G1C9 344 aa21.47■■□□□ 1.03
CLSTN1-201ENST00000361311 CECR2Q9BXF3 1484 aa21.44■■□□□ 1.02
CLSTN1-201ENST00000361311 CANXP27824 592 aaKnown RBP21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms