RNA–Protein interactions for RNA: ENST00000435891.5

CLSTN1-203, Transcript of calsyntenin 1, humanhuman

TSL 2

Gene CLSTN1, Length 3,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-203ENST00000435891 NISCHQ9Y2I1 1504 aa21.69■■□□□ 1.06
CLSTN1-203ENST00000435891 SHROOM4Q9ULL8 1493 aa18.59■□□□□ 0.57
CLSTN1-203ENST00000435891 CCDC180Q9P1Z9 1646 aa18.37■□□□□ 0.53
CLSTN1-203ENST00000435891 ZCCHC6Q5VYS8 1495 aaKnown RBP18.34■□□□□ 0.53
CLSTN1-203ENST00000435891 SUPT5HO00267 1087 aaKnown RBP18.19■□□□□ 0.5
CLSTN1-203ENST00000435891 DCAF8L2P0C7V8 631 aa18.08■□□□□ 0.48
CLSTN1-203ENST00000435891 DCAF1Q9Y4B6 1507 aa17.73■□□□□ 0.43
CLSTN1-203ENST00000435891 CHIC1Q5VXU3 224 aa17.65■□□□□ 0.42
CLSTN1-203ENST00000435891 MYO15BQ96JP2 1530 aa17.62■□□□□ 0.41
CLSTN1-203ENST00000435891 SCRIBQ14160 1630 aa17.32■□□□□ 0.36
CLSTN1-203ENST00000435891 ABCC9O60706 1549 aa17.29■□□□□ 0.36
CLSTN1-203ENST00000435891 RSF1Q96T23 1441 aaPredicted RBP17.19■□□□□ 0.34
CLSTN1-203ENST00000435891 LOC105371045A0A1W2PR82 267 aa17.19■□□□□ 0.34
CLSTN1-203ENST00000435891 PCGF6Q9BYE7 350 aa17.1■□□□□ 0.33
CLSTN1-203ENST00000435891 HRCP23327 699 aa17.03■□□□□ 0.32
CLSTN1-203ENST00000435891 RB1CC1Q8TDY2 1594 aa17.02■□□□□ 0.32
CLSTN1-203ENST00000435891 NACADO15069 1562 aa17.01■□□□□ 0.31
CLSTN1-203ENST00000435891 CECR2Q9BXF3 1484 aa16.99■□□□□ 0.31
CLSTN1-203ENST00000435891 MROH2BQ7Z745 1585 aa16.91■□□□□ 0.3
CLSTN1-203ENST00000435891 TRIM41Q8WV44 630 aa16.89■□□□□ 0.29
CLSTN1-203ENST00000435891 FAM9AQ8IZU1 332 aaPredicted RBP16.83■□□□□ 0.28
CLSTN1-203ENST00000435891 WIZO95785 1651 aa16.81■□□□□ 0.28
CLSTN1-203ENST00000435891 PPARGC1BQ86YN6 1023 aaKnown RBP16.79■□□□□ 0.28
CLSTN1-203ENST00000435891 EHMT2Q96KQ7 1210 aa16.74■□□□□ 0.27
CLSTN1-203ENST00000435891 TRIM26Q12899 539 aaPredicted RBP16.71■□□□□ 0.27
CLSTN1-203ENST00000435891 BAZ1AQ9NRL2 1556 aaPredicted RBP16.64■□□□□ 0.25
CLSTN1-203ENST00000435891 PELP1Q8IZL8 1130 aaKnown RBP16.64■□□□□ 0.25
CLSTN1-203ENST00000435891 UNC13AQ9UPW8 1703 aa16.56■□□□□ 0.24
CLSTN1-203ENST00000435891 EIF4G1Q04637 1599 aaKnown RBP16.55■□□□□ 0.24
CLSTN1-203ENST00000435891 SMARCA4P51532 1647 aa16.52■□□□□ 0.23
CLSTN1-203ENST00000435891 TOP2AP11388 1531 aaKnown RBP16.48■□□□□ 0.23
CLSTN1-203ENST00000435891 CCDC88BA6NC98 1476 aa16.47■□□□□ 0.23
CLSTN1-203ENST00000435891 PABPN1Q86U42 306 aaKnown RBP eCLIP16.46■□□□□ 0.23
CLSTN1-203ENST00000435891 ABCC8Q09428 1581 aa16.45■□□□□ 0.22
CLSTN1-203ENST00000435891 SMARCA2P51531 1590 aa16.43■□□□□ 0.22
CLSTN1-203ENST00000435891 BICRAQ9NZM4 1560 aa16.37■□□□□ 0.21
CLSTN1-203ENST00000435891 SOGA1O94964 1423 aa16.3■□□□□ 0.2
CLSTN1-203ENST00000435891 ZEB1P37275 1124 aaPredicted RBP16.24■□□□□ 0.19
CLSTN1-203ENST00000435891 RUSC2Q8N2Y8 1516 aa16.24■□□□□ 0.19
CLSTN1-203ENST00000435891 TTBK1Q5TCY1 1321 aaPredicted RBP16.18■□□□□ 0.18
CLSTN1-203ENST00000435891 PEG3Q9GZU2 1588 aa16.17■□□□□ 0.18
CLSTN1-203ENST00000435891 CEP162Q5TB80 1403 aa16.16■□□□□ 0.18
CLSTN1-203ENST00000435891 CSRNP3Q8WYN3 585 aa16.15■□□□□ 0.18
CLSTN1-203ENST00000435891 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.13■□□□□ 0.17
CLSTN1-203ENST00000435891 WRNQ14191 1432 aaPredicted RBP eCLIP16.12■□□□□ 0.17
CLSTN1-203ENST00000435891 ATAD2BQ9ULI0 1458 aa16.12■□□□□ 0.17
CLSTN1-203ENST00000435891 MYT1Q01538 1121 aa16.11■□□□□ 0.17
CLSTN1-203ENST00000435891 TNIKQ9UKE5 1360 aa16.11■□□□□ 0.17
CLSTN1-203ENST00000435891 UBTFP17480 764 aaKnown RBP16.1■□□□□ 0.17
CLSTN1-203ENST00000435891 EEA1Q15075 1411 aa16.08■□□□□ 0.16
CLSTN1-203ENST00000435891 SYNJ1O43426 1573 aa16.07■□□□□ 0.16
CLSTN1-203ENST00000435891 BAZ1BQ9UIG0 1483 aaKnown RBP16.05■□□□□ 0.16
CLSTN1-203ENST00000435891 CCER1Q8TC90 406 aaPredicted RBP16.02■□□□□ 0.16
CLSTN1-203ENST00000435891 GOLGA3Q08378 1498 aa16.01■□□□□ 0.15
CLSTN1-203ENST00000435891 SCAF1Q9H7N4 1312 aaKnown RBP15.93■□□□□ 0.14
CLSTN1-203ENST00000435891 CEP164Q9UPV0 1460 aa15.92■□□□□ 0.14
CLSTN1-203ENST00000435891 KIF21BO75037 1637 aa15.89■□□□□ 0.13
CLSTN1-203ENST00000435891 RAPGEF2Q9Y4G8 1499 aa15.88■□□□□ 0.13
CLSTN1-203ENST00000435891 RANGAP1P46060 587 aaPredicted RBP15.87■□□□□ 0.13
CLSTN1-203ENST00000435891 CLIP1P30622 1438 aa15.86■□□□□ 0.13
CLSTN1-203ENST00000435891 TOP2BQ02880 1626 aa15.83■□□□□ 0.12
CLSTN1-203ENST00000435891 NCAPD3P42695 1498 aa15.78■□□□□ 0.12
CLSTN1-203ENST00000435891 VPS8Q8N3P4 1428 aa15.78■□□□□ 0.12
CLSTN1-203ENST00000435891 HNRNPUL2Q1KMD3 747 aaKnown RBP15.77■□□□□ 0.11
CLSTN1-203ENST00000435891 BIVM-ERCC5R4GMW8 1640 aa15.76■□□□□ 0.11
CLSTN1-203ENST00000435891 HMGXB3Q12766 1538 aa15.75■□□□□ 0.11
CLSTN1-203ENST00000435891 CUX1P39880 1505 aa15.73■□□□□ 0.11
CLSTN1-203ENST00000435891 PRXQ9BXM0 1461 aa15.69■□□□□ 0.1
CLSTN1-203ENST00000435891 DIEXFQ68CQ4 756 aaKnown RBP15.69■□□□□ 0.1
CLSTN1-203ENST00000435891 APLP2Q06481 763 aa15.67■□□□□ 0.1
CLSTN1-203ENST00000435891 CFTRP13569 1480 aa15.66■□□□□ 0.1
CLSTN1-203ENST00000435891 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
CLSTN1-203ENST00000435891 ARAP1Q96P48 1450 aa15.63■□□□□ 0.09
CLSTN1-203ENST00000435891 KIF27Q86VH2 1401 aa15.6■□□□□ 0.09
CLSTN1-203ENST00000435891 KANK4Q5T7N3 995 aaPredicted RBP15.6■□□□□ 0.09
CLSTN1-203ENST00000435891 NEUROD1Q13562 356 aa15.57■□□□□ 0.08
CLSTN1-203ENST00000435891 ZNF316A6NFI3 1004 aaPredicted RBP15.56■□□□□ 0.08
CLSTN1-203ENST00000435891 ACIN1Q9UKV3 1341 aaKnown RBP15.53■□□□□ 0.08
CLSTN1-203ENST00000435891 ARHGAP35Q9NRY4 1499 aa15.5■□□□□ 0.07
CLSTN1-203ENST00000435891 CADPSQ9ULU8 1353 aa15.5■□□□□ 0.07
CLSTN1-203ENST00000435891 CUX2O14529 1486 aa15.5■□□□□ 0.07
CLSTN1-203ENST00000435891 IGF1RP08069 1367 aa15.49■□□□□ 0.07
CLSTN1-203ENST00000435891 GTF3C3Q9Y5Q9 886 aa15.48■□□□□ 0.07
CLSTN1-203ENST00000435891 PRDM2Q13029 1718 aa15.46■□□□□ 0.07
CLSTN1-203ENST00000435891 FGD5Q6ZNL6 1462 aa15.44■□□□□ 0.06
CLSTN1-203ENST00000435891 CC2D2AQ9P2K1 1620 aa15.42■□□□□ 0.06
CLSTN1-203ENST00000435891 DHX57Q6P158 1386 aaKnown RBP15.42■□□□□ 0.06
CLSTN1-203ENST00000435891 RRBP1Q9P2E9 1410 aaKnown RBP15.4■□□□□ 0.06
CLSTN1-203ENST00000435891 CARMIL1Q5VZK9 1371 aa15.4■□□□□ 0.06
CLSTN1-203ENST00000435891 MIER1Q8N108 512 aa15.4■□□□□ 0.06
CLSTN1-203ENST00000435891 CENPBP07199 599 aaPredicted RBP15.38■□□□□ 0.05
CLSTN1-203ENST00000435891 ITGAEP38570 1179 aa15.37■□□□□ 0.05
CLSTN1-203ENST00000435891 YTHDC1Q96MU7 727 aaKnown RBP15.37■□□□□ 0.05
CLSTN1-203ENST00000435891 FANCD2Q9BXW9 1451 aa15.35■□□□□ 0.05
CLSTN1-203ENST00000435891 CCNB3Q8WWL7 1395 aa15.35■□□□□ 0.05
CLSTN1-203ENST00000435891 RAD54L2Q9Y4B4 1467 aa15.33■□□□□ 0.04
CLSTN1-203ENST00000435891 P3H3Q8IVL6 736 aa15.33■□□□□ 0.04
CLSTN1-203ENST00000435891 NESP48681 1621 aa15.32■□□□□ 0.04
CLSTN1-203ENST00000435891 CLSPNQ9HAW4 1339 aa15.3■□□□□ 0.04
CLSTN1-203ENST00000435891 TIAM1Q13009 1591 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms