RNA–Protein interactions for RNA: ENST00000531430.5

NEDD8-206, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 651 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-206ENST00000531430 NISCHQ9Y2I1 1504 aa23.1■■□□□ 1.29
NEDD8-206ENST00000531430 ABCC9O60706 1549 aa21.2■□□□□ 0.98
NEDD8-206ENST00000531430 CCDC180Q9P1Z9 1646 aa20.71■□□□□ 0.91
NEDD8-206ENST00000531430 DNAJC5BQ9UF47 199 aa20.16■□□□□ 0.82
NEDD8-206ENST00000531430 DCAF8L2P0C7V8 631 aa20.03■□□□□ 0.8
NEDD8-206ENST00000531430 RB1CC1Q8TDY2 1594 aa19.95■□□□□ 0.78
NEDD8-206ENST00000531430 PABPN1Q86U42 306 aaKnown RBP eCLIP19.84■□□□□ 0.77
NEDD8-206ENST00000531430 NACADO15069 1562 aa19.72■□□□□ 0.75
NEDD8-206ENST00000531430 UNC13AQ9UPW8 1703 aa19.43■□□□□ 0.7
NEDD8-206ENST00000531430 BICRAQ9NZM4 1560 aa19.33■□□□□ 0.69
NEDD8-206ENST00000531430 MYO15BQ96JP2 1530 aa19.25■□□□□ 0.67
NEDD8-206ENST00000531430 CECR2Q9BXF3 1484 aa19.09■□□□□ 0.65
NEDD8-206ENST00000531430 CC2D2AQ9P2K1 1620 aa19.04■□□□□ 0.64
NEDD8-206ENST00000531430 ZCCHC6Q5VYS8 1495 aaKnown RBP19.03■□□□□ 0.64
NEDD8-206ENST00000531430 SCRIBQ14160 1630 aa19.03■□□□□ 0.64
NEDD8-206ENST00000531430 DCAF1Q9Y4B6 1507 aa18.95■□□□□ 0.62
NEDD8-206ENST00000531430 SHROOM4Q9ULL8 1493 aa18.93■□□□□ 0.62
NEDD8-206ENST00000531430 EIF4G1Q04637 1599 aaKnown RBP18.91■□□□□ 0.62
NEDD8-206ENST00000531430 DNAJC5Q9H3Z4 198 aa18.67■□□□□ 0.58
NEDD8-206ENST00000531430 ERCC6Q03468 1493 aa18.34■□□□□ 0.53
NEDD8-206ENST00000531430 CUX2O14529 1486 aa18.24■□□□□ 0.51
NEDD8-206ENST00000531430 NCAPD3P42695 1498 aa18.24■□□□□ 0.51
NEDD8-206ENST00000531430 ATAD2BQ9ULI0 1458 aa18.17■□□□□ 0.5
NEDD8-206ENST00000531430 NESP48681 1621 aa18.12■□□□□ 0.49
NEDD8-206ENST00000531430 SMARCA2P51531 1590 aa18.08■□□□□ 0.48
NEDD8-206ENST00000531430 SMARCA4P51532 1647 aa18.05■□□□□ 0.48
NEDD8-206ENST00000531430 BAZ1BQ9UIG0 1483 aaKnown RBP18.01■□□□□ 0.47
NEDD8-206ENST00000531430 HMGXB3Q12766 1538 aa18■□□□□ 0.47
NEDD8-206ENST00000531430 BAZ1AQ9NRL2 1556 aaPredicted RBP17.93■□□□□ 0.46
NEDD8-206ENST00000531430 TRIM41Q8WV44 630 aa17.92■□□□□ 0.46
NEDD8-206ENST00000531430 PDS5BQ9NTI5 1447 aa17.85■□□□□ 0.45
NEDD8-206ENST00000531430 MROH2BQ7Z745 1585 aa17.83■□□□□ 0.45
NEDD8-206ENST00000531430 LAMC3Q9Y6N6 1575 aa17.83■□□□□ 0.45
NEDD8-206ENST00000531430 THOC2Q8NI27 1593 aaKnown RBP17.83■□□□□ 0.44
NEDD8-206ENST00000531430 KIF21AQ7Z4S6 1674 aa17.78■□□□□ 0.44
NEDD8-206ENST00000531430 PEG3Q9GZU2 1588 aa17.78■□□□□ 0.44
NEDD8-206ENST00000531430 CADPSQ9ULU8 1353 aa17.74■□□□□ 0.43
NEDD8-206ENST00000531430 MRC2Q9UBG0 1479 aa17.65■□□□□ 0.42
NEDD8-206ENST00000531430 WIZO95785 1651 aa17.61■□□□□ 0.41
NEDD8-206ENST00000531430 OSCARQ8IYS5 282 aa17.58■□□□□ 0.4
NEDD8-206ENST00000531430 CEP164Q9UPV0 1460 aa17.56■□□□□ 0.4
NEDD8-206ENST00000531430 WDR62O43379 1518 aa17.55■□□□□ 0.4
NEDD8-206ENST00000531430 FANCD2Q9BXW9 1451 aa17.53■□□□□ 0.4
NEDD8-206ENST00000531430 CFTRP13569 1480 aa17.42■□□□□ 0.38
NEDD8-206ENST00000531430 RSF1Q96T23 1441 aaPredicted RBP17.39■□□□□ 0.38
NEDD8-206ENST00000531430 URB2Q14146 1524 aaKnown RBP17.37■□□□□ 0.37
NEDD8-206ENST00000531430 TOP2AP11388 1531 aaKnown RBP17.31■□□□□ 0.36
NEDD8-206ENST00000531430 CYB5RLQ6IPT4 315 aa17.25■□□□□ 0.35
NEDD8-206ENST00000531430 ZNF608Q9ULD9 1512 aaPredicted RBP17.24■□□□□ 0.35
NEDD8-206ENST00000531430 FBLN2P98095 1184 aa17.23■□□□□ 0.35
NEDD8-206ENST00000531430 CCDC88BA6NC98 1476 aa17.21■□□□□ 0.35
NEDD8-206ENST00000531430 IFT140Q96RY7 1462 aa17.21■□□□□ 0.35
NEDD8-206ENST00000531430 RIMBP3CA6NJZ7 1639 aa17.21■□□□□ 0.35
NEDD8-206ENST00000531430 RIMBP3BA6NNM3 1639 aa17.21■□□□□ 0.35
NEDD8-206ENST00000531430 RIMBP3Q9UFD9 1639 aa17.21■□□□□ 0.35
NEDD8-206ENST00000531430 TRHP20396 242 aaPredicted RBP17.2■□□□□ 0.34
NEDD8-206ENST00000531430 TOPBP1Q92547 1522 aa17.14■□□□□ 0.33
NEDD8-206ENST00000531430 ARHGEF11O15085 1522 aa17.13■□□□□ 0.33
NEDD8-206ENST00000531430 AQRO60306 1485 aaKnown RBP eCLIP17.12■□□□□ 0.338e-8■■□□□ 11.9
NEDD8-206ENST00000531430 PRDM2Q13029 1718 aa17.11■□□□□ 0.33
NEDD8-206ENST00000531430 ABCC8Q09428 1581 aa17.09■□□□□ 0.33
NEDD8-206ENST00000531430 EIF4G3O43432 1585 aaKnown RBP17.04■□□□□ 0.32
NEDD8-206ENST00000531430 DNMBPQ6XZF7 1577 aa17.02■□□□□ 0.31
NEDD8-206ENST00000531430 TDRD9Q8NDG6 1382 aaKnown RBP17.01■□□□□ 0.31
NEDD8-206ENST00000531430 CHMP7Q8WUX9 453 aaPredicted RBP16.99■□□□□ 0.31
NEDD8-206ENST00000531430 CHD1O14646 1710 aa16.99■□□□□ 0.31
NEDD8-206ENST00000531430 RAD54L2Q9Y4B4 1467 aa16.98■□□□□ 0.31
NEDD8-206ENST00000531430 SOGA1O94964 1423 aa16.97■□□□□ 0.31
NEDD8-206ENST00000531430 POLA1P09884 1462 aaPredicted RBP16.95■□□□□ 0.3
NEDD8-206ENST00000531430 TARBP1Q13395 1621 aaKnown RBP16.95■□□□□ 0.3
NEDD8-206ENST00000531430 ARAP1Q96P48 1450 aa16.94■□□□□ 0.3
NEDD8-206ENST00000531430 AEBP2Q6ZN18 517 aaPredicted RBP16.89■□□□□ 0.29
NEDD8-206ENST00000531430 SNAPC4Q5SXM2 1469 aa16.86■□□□□ 0.29
NEDD8-206ENST00000531430 FGD5Q6ZNL6 1462 aa16.84■□□□□ 0.29
NEDD8-206ENST00000531430 GRIN2BQ13224 1484 aa16.78■□□□□ 0.28
NEDD8-206ENST00000531430 SYNJ1O43426 1573 aa16.77■□□□□ 0.28
NEDD8-206ENST00000531430 MAGI1Q96QZ7 1491 aaPredicted RBP16.75■□□□□ 0.27
NEDD8-206ENST00000531430 CUX1P39880 1505 aa16.75■□□□□ 0.27
NEDD8-206ENST00000531430 SUPT5HO00267 1087 aaKnown RBP16.73■□□□□ 0.27
NEDD8-206ENST00000531430 CLASP1Q7Z460 1538 aa16.73■□□□□ 0.27
NEDD8-206ENST00000531430 SYNJ2O15056 1496 aa16.73■□□□□ 0.27
NEDD8-206ENST00000531430 GAPVD1Q14C86 1478 aa16.71■□□□□ 0.27
NEDD8-206ENST00000531430 WDR97A6NE52 1622 aa16.68■□□□□ 0.26
NEDD8-206ENST00000531430 PBRM1Q86U86 1689 aa16.62■□□□□ 0.25
NEDD8-206ENST00000531430 ABCA10Q8WWZ4 1543 aa16.57■□□□□ 0.24
NEDD8-206ENST00000531430 ERCC6L2Q5T890 1561 aa16.55■□□□□ 0.24
NEDD8-206ENST00000531430 GRIN2AQ12879 1464 aa16.54■□□□□ 0.24
NEDD8-206ENST00000531430 WRNQ14191 1432 aaPredicted RBP eCLIP16.54■□□□□ 0.24
NEDD8-206ENST00000531430 ABCA5Q8WWZ7 1642 aa16.52■□□□□ 0.23
NEDD8-206ENST00000531430 NPM1P06748 294 aaKnown RBP eCLIP16.49■□□□□ 0.23
NEDD8-206ENST00000531430 JPH4Q96JJ6 628 aa16.48■□□□□ 0.23
NEDD8-206ENST00000531430 CEP170Q5SW79 1584 aa16.47■□□□□ 0.23
NEDD8-206ENST00000531430 FHAD1B1AJZ9 1412 aa16.47■□□□□ 0.23
NEDD8-206ENST00000531430 NUP160Q12769 1436 aa16.45■□□□□ 0.22
NEDD8-206ENST00000531430 FAM69CQ0P6D2 419 aa16.45■□□□□ 0.22
NEDD8-206ENST00000531430 PRG4Q92954 1404 aaPredicted RBP16.45■□□□□ 0.22
NEDD8-206ENST00000531430 ADAMTS12P58397 1594 aa16.43■□□□□ 0.22
NEDD8-206ENST00000531430 TTBK1Q5TCY1 1321 aaPredicted RBP16.4■□□□□ 0.22
NEDD8-206ENST00000531430 TOP2BQ02880 1626 aa16.37■□□□□ 0.21
NEDD8-206ENST00000531430 ERICH3Q5RHP9 1530 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms