Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.522e-7■■□□□ 12.9
SMNDC1O75940 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.73■□□□□ 0.272e-7■■□□□ 12.9
SMNDC1O75940 GUK1-230ENST00000485838 774 ntTSL 316.45■□□□□ 0.222e-7■■□□□ 12.9
SMNDC1O75940 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.132e-7■■□□□ 12.9
SMNDC1O75940 GUK1-238ENST00000498092 865 ntTSL 513.75□□□□□ -0.212e-7■■□□□ 12.9
SMNDC1O75940 GUK1-206ENST00000366723 845 ntTSL 5 BASIC13.55□□□□□ -0.242e-7■■□□□ 12.9
SMNDC1O75940 GUK1-212ENST00000435153 865 ntTSL 311.14□□□□□ -0.632e-7■■□□□ 12.9
SMNDC1O75940 TXNDC16-204ENST00000557374 542 ntTSL 417.7■□□□□ 0.423e-9■■□□□ 12.9
SMNDC1O75940 TXNDC16-202ENST00000554399 504 ntTSL 414.72□□□□□ -0.053e-9■■□□□ 12.9
SMNDC1O75940 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.133e-9■■□□□ 12.9
SMNDC1O75940 HNRNPA1-209ENST00000550482 832 ntTSL 213.47□□□□□ -0.253e-9■■□□□ 12.9
SMNDC1O75940 INTS3-207ENST00000481797 5741 ntTSL 212.53□□□□□ -0.43e-9■■□□□ 12.9
SMNDC1O75940 TXNDC16-201ENST00000281741 4564 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.563e-9■■□□□ 12.9
SMNDC1O75940 INTS3-201ENST00000318967 5235 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.763e-9■■□□□ 12.9
SMNDC1O75940 YES1-205ENST00000584307 4639 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.813e-9■■□□□ 12.9
SMNDC1O75940 YES1-201ENST00000314574 4441 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.183e-9■■□□□ 12.9
SMNDC1O75940 YES1-203ENST00000577961 4554 ntTSL 5 BASIC7.05□□□□□ -1.283e-9■■□□□ 12.9
SMNDC1O75940 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.494e-6■■□□□ 12.9
SMNDC1O75940 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.274e-6■■□□□ 12.9
SMNDC1O75940 SNX5-214ENST00000490175 2025 ntTSL 1 (best)16.07■□□□□ 0.164e-6■■□□□ 12.9
SMNDC1O75940 MTHFR-217ENST00000641820 1569 ntBASIC16.33■□□□□ 0.25e-7■■□□□ 12.9
SMNDC1O75940 METTL26-206ENST00000448973 1710 ntTSL 1 (best)20.98■□□□□ 0.951e-8■■□□□ 12.9
SMNDC1O75940 METTL26-210ENST00000565799 716 ntTSL 319.52■□□□□ 0.721e-8■■□□□ 12.9
SMNDC1O75940 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.85■□□□□ 0.611e-8■■□□□ 12.9
SMNDC1O75940 METTL26-209ENST00000565163 485 ntTSL 317.2■□□□□ 0.341e-8■■□□□ 12.9
SMNDC1O75940 METTL26-211ENST00000568077 588 ntTSL 316.67■□□□□ 0.261e-8■■□□□ 12.9
SMNDC1O75940 METTL26-213ENST00000568830 590 ntTSL 316.67■□□□□ 0.261e-8■■□□□ 12.9
SMNDC1O75940 METTL26-212ENST00000568773 499 ntTSL 215.83■□□□□ 0.121e-8■■□□□ 12.9
SMNDC1O75940 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.051e-8■■□□□ 12.9
SMNDC1O75940 METTL26-205ENST00000397666 726 ntTSL 2 BASIC15.38■□□□□ 0.051e-8■■□□□ 12.9
SMNDC1O75940 METTL26-208ENST00000564039 518 ntTSL 215.29■□□□□ 0.041e-8■■□□□ 12.9
SMNDC1O75940 METTL26-207ENST00000456420 755 ntTSL 315.29■□□□□ 0.041e-8■■□□□ 12.9
SMNDC1O75940 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.76□□□□□ -0.051e-8■■□□□ 12.9
SMNDC1O75940 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.22□□□□□ -0.131e-8■■□□□ 12.9
SMNDC1O75940 METTL26-214ENST00000614890 801 ntTSL 3 BASIC13.78□□□□□ -0.21e-8■■□□□ 12.9
SMNDC1O75940 SLC3A2-217ENST00000541425 595 ntTSL 59.81□□□□□ -0.843e-10■■□□□ 12.8
SMNDC1O75940 SLC3A2-223ENST00000546312 564 ntTSL 29.13□□□□□ -0.953e-10■■□□□ 12.8
SMNDC1O75940 TAF1D-207ENST00000527169 1127 ntTSL 515.68■□□□□ 0.11e-39■■□□□ 12.8
SMNDC1O75940 TAF1D-214ENST00000530089 1429 ntTSL 39.12□□□□□ -0.951e-39■■□□□ 12.8
SMNDC1O75940 XAB2-202ENST00000595288 4555 ntTSL 216.33■□□□□ 0.213e-6■■□□□ 12.8
SMNDC1O75940 XAB2-201ENST00000358368 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.273e-6■■□□□ 12.8
SMNDC1O75940 VEGFA-211ENST00000476772 1683 ntTSL 1 (best)26.17■■□□□ 1.782e-18■■□□□ 12.8
SMNDC1O75940 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.44e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.374e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.3■■□□□ 1.324e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.244e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-220ENST00000519767 970 ntTSL 1 (best)22.81■■□□□ 1.244e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC22.69■■□□□ 1.224e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.224e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC22.69■■□□□ 1.224e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC22.69■■□□□ 1.224e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC22.69■■□□□ 1.224e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.224e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC22.69■■□□□ 1.224e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.224e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.074e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.74■□□□□ 0.914e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-217ENST00000518538 535 ntTSL 219.62■□□□□ 0.732e-18■■□□□ 12.8
SMNDC1O75940 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.27■□□□□ 0.524e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.484e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.03■□□□□ 0.164e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-215ENST00000497139 2746 ntTSL 1 (best)14.4□□□□□ -0.14e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-221ENST00000520265 336 ntTSL 512.8□□□□□ -0.364e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-201ENST00000230480 993 ntTSL 1 (best) BASIC12.17□□□□□ -0.464e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC11.91□□□□□ -0.54e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC11.44□□□□□ -0.584e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-225ENST00000523950 954 ntAPPRIS ALT2 TSL 1 (best) BASIC11.2□□□□□ -0.624e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC11.11□□□□□ -0.634e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC11.11□□□□□ -0.634e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.634e-7■■□□□ 12.8
SMNDC1O75940 VEGFA-212ENST00000480614 12167 ntTSL 1 (best)9.67□□□□□ -0.864e-7■■□□□ 12.8
SMNDC1O75940 CIRBP-208ENST00000586548 1734 ntTSL 321.14■□□□□ 0.972e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC20.85■□□□□ 0.932e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-231ENST00000591097 1507 ntTSL 1 (best)20.78■□□□□ 0.922e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.05■□□□□ 0.642e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-224ENST00000589686 532 ntTSL 218.86■□□□□ 0.612e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-229ENST00000590704 1456 ntTSL 218.64■□□□□ 0.572e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.55■□□□□ 0.562e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.5■□□□□ 0.552e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-234ENST00000591659 587 ntTSL 218.5■□□□□ 0.552e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-226ENST00000590171 905 ntTSL 318.5■□□□□ 0.552e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.84■□□□□ 0.452e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.432e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.2■□□□□ 0.342e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.09■□□□□ 0.332e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.282e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.77■□□□□ 0.282e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-238ENST00000592412 532 ntTSL 416.51■□□□□ 0.232e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-243ENST00000593128 796 ntTSL 316.26■□□□□ 0.192e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-244ENST00000593283 758 ntTSL 515.93■□□□□ 0.142e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC14.81□□□□□ -0.042e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-241ENST00000593048 650 ntTSL 314.59□□□□□ -0.072e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-230ENST00000591055 928 ntTSL 214.24□□□□□ -0.132e-6■■□□□ 12.8
SMNDC1O75940 CIRBP-218ENST00000588344 370 ntTSL 38.05□□□□□ -1.122e-6■■□□□ 12.8
SMNDC1O75940 MTG1-204ENST00000473735 2212 ntTSL 523.18■■□□□ 1.38e-14■■□□□ 12.8
SMNDC1O75940 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.218e-14■■□□□ 12.8
SMNDC1O75940 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.28■□□□□ 0.28e-14■■□□□ 12.8
SMNDC1O75940 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.078e-14■■□□□ 12.8
SMNDC1O75940 MTG1-202ENST00000432508 953 ntTSL 214.79□□□□□ -0.048e-14■■□□□ 12.8
SMNDC1O75940 MTG1-203ENST00000460848 2730 ntTSL 214.76□□□□□ -0.058e-14■■□□□ 12.8
Retrieved 100 of 11,362 protein–RNA pairs in 83.1 ms