Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.253e-9■■□□□ 12.5
LSM11P83369 CDK5RAP3-237ENST00000585163 2519 ntTSL 1 (best)13.4□□□□□ -0.263e-9■■□□□ 12.5
LSM11P83369 CDK5RAP3-219ENST00000580670 1768 ntTSL 512.61□□□□□ -0.393e-9■■□□□ 12.5
LSM11P83369 CDK5RAP3-202ENST00000536708 1975 ntTSL 2 BASIC11.92□□□□□ -0.53e-9■■□□□ 12.5
LSM11P83369 AC018521.1-202ENST00000641877 2655 ntBASIC11.9□□□□□ -0.53e-9■■□□□ 12.5
LSM11P83369 CDK5RAP3-217ENST00000580287 2609 ntTSL 1 (best)11.76□□□□□ -0.533e-9■■□□□ 12.5
LSM11P83369 CDK5RAP3-232ENST00000584168 2684 ntTSL 510.97□□□□□ -0.653e-9■■□□□ 12.5
LSM11P83369 CDK5RAP3-231ENST00000584063 2759 ntTSL 1 (best)10.92□□□□□ -0.663e-9■■□□□ 12.5
LSM11P83369 SRSF5-211ENST00000555547 2057 ntTSL 510.74□□□□□ -0.699e-10■■□□□ 12.5
LSM11P83369 SRSF5-212ENST00000556184 2443 ntTSL 1 (best)9.85□□□□□ -0.839e-10■■□□□ 12.5
LSM11P83369 SMARCA1-205ENST00000617310 4291 ntTSL 29.14□□□□□ -0.954e-7■■□□□ 12.5
LSM11P83369 SMARCA1-202ENST00000371122 4099 ntAPPRIS P3 TSL 1 (best) BASIC8.45□□□□□ -1.064e-7■■□□□ 12.5
LSM11P83369 SMARCA1-203ENST00000371123 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC8.31□□□□□ -1.084e-7■■□□□ 12.5
LSM11P83369 FANCA-215ENST00000564475 732 ntAPPRIS ALT2 TSL 210.49□□□□□ -0.735e-7■■□□□ 12.5
LSM11P83369 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.296e-8■■□□□ 12.5
LSM11P83369 CHRD-208ENST00000460627 4719 ntTSL 215.66■□□□□ 0.16e-8■■□□□ 12.5
LSM11P83369 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -06e-8■■□□□ 12.5
LSM11P83369 CHRD-205ENST00000448472 3547 ntTSL 1 (best)15.04■□□□□ -06e-8■■□□□ 12.5
LSM11P83369 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.186e-8■■□□□ 12.5
LSM11P83369 CHRD-204ENST00000420973 3492 ntTSL 1 (best)13.44□□□□□ -0.266e-8■■□□□ 12.5
LSM11P83369 CHRD-212ENST00000470150 4234 ntTSL 213□□□□□ -0.336e-8■■□□□ 12.5
LSM11P83369 PROC-203ENST00000409048 1586 ntTSL 5 BASIC23.4■■□□□ 1.342e-8■■□□□ 12.5
LSM11P83369 PROC-202ENST00000402125 779 ntTSL 216.38■□□□□ 0.212e-8■■□□□ 12.5
LSM11P83369 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.162e-8■■□□□ 12.5
LSM11P83369 ARAP1-221ENST00000546293 702 ntTSL 315.72■□□□□ 0.113e-6■■□□□ 12.5
LSM11P83369 ARAP1-218ENST00000543868 507 ntTSL 213.76□□□□□ -0.213e-6■■□□□ 12.5
LSM11P83369 ARAP1-220ENST00000544958 473 ntTSL 312.35□□□□□ -0.433e-6■■□□□ 12.5
LSM11P83369 ARAP1-213ENST00000536993 315 ntTSL 29.8□□□□□ -0.843e-6■■□□□ 12.5
LSM11P83369 C22orf34-206ENST00000444628 453 ntTSL 59.57□□□□□ -0.881e-8■■□□□ 12.5
LSM11P83369 TAF1C-219ENST00000568265 1140 ntAPPRIS ALT2 TSL 417.2■□□□□ 0.342e-6■■□□□ 12.5
LSM11P83369 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.242e-6■■□□□ 12.5
LSM11P83369 TAF1C-208ENST00000563428 2531 ntTSL 215.5■□□□□ 0.072e-6■■□□□ 12.5
LSM11P83369 TAF1C-204ENST00000544090 2747 ntTSL 215.04■□□□□ -02e-6■■□□□ 12.5
LSM11P83369 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.12e-6■■□□□ 12.5
LSM11P83369 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.11■□□□□ 0.652e-6■■□□□ 12.4
LSM11P83369 ECHDC2-202ENST00000371520 1606 ntTSL 1 (best)18.2■□□□□ 0.52e-6■■□□□ 12.4
LSM11P83369 ECHDC2-208ENST00000476477 1676 ntTSL 216.62■□□□□ 0.252e-6■■□□□ 12.4
LSM11P83369 ECHDC2-204ENST00000460612 2645 ntTSL 216.03■□□□□ 0.162e-6■■□□□ 12.4
LSM11P83369 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.212e-6■■□□□ 12.4
LSM11P83369 ECHDC2-201ENST00000358358 1126 ntTSL 2 BASIC11.89□□□□□ -0.512e-6■■□□□ 12.4
LSM11P83369 ECHDC2-205ENST00000463923 663 ntTSL 310.94□□□□□ -0.662e-6■■□□□ 12.4
LSM11P83369 ECHDC2-224ENST00000543419 555 ntTSL 37.35□□□□□ -1.232e-6■■□□□ 12.4
LSM11P83369 LAMA5-204ENST00000462415 585 ntTSL 215.13■□□□□ 0.012e-12■■□□□ 12.4
LSM11P83369 WDR6-218ENST00000492780 537 ntTSL 212.33□□□□□ -0.442e-8■■□□□ 12.4
LSM11P83369 AMPD2-201ENST00000256578 3899 ntAPPRIS P2 TSL 5 BASIC10.9□□□□□ -0.663e-8■■□□□ 12.4
LSM11P83369 AMPD2-205ENST00000393688 3217 ntTSL 1 (best) BASIC10.55□□□□□ -0.723e-8■■□□□ 12.4
LSM11P83369 AMPD2-202ENST00000342115 3728 ntTSL 1 (best) BASIC10.1□□□□□ -0.793e-8■■□□□ 12.4
LSM11P83369 SH3D21-202ENST00000474766 2043 ntTSL 1 (best)19.57■□□□□ 0.727e-7■■□□□ 12.4
LSM11P83369 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC17.27■□□□□ 0.367e-7■■□□□ 12.4
LSM11P83369 TNS2-217ENST00000552168 1918 ntTSL 517■□□□□ 0.317e-7■■□□□ 12.4
LSM11P83369 SH3D21-203ENST00000480549 3182 ntTSL 215.59■□□□□ 0.097e-7■■□□□ 12.4
LSM11P83369 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.057e-7■■□□□ 12.4
LSM11P83369 WDR45B-205ENST00000572583 2322 ntTSL 1 (best)13.72□□□□□ -0.217e-7■■□□□ 12.4
LSM11P83369 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.257e-7■■□□□ 12.4
LSM11P83369 TNS2-208ENST00000549311 5004 ntTSL 513.44□□□□□ -0.267e-7■■□□□ 12.4
LSM11P83369 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.427e-7■■□□□ 12.4
LSM11P83369 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.447e-7■■□□□ 12.4
LSM11P83369 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC12.14□□□□□ -0.477e-7■■□□□ 12.4
LSM11P83369 TNS2-204ENST00000546602 4429 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.617e-7■■□□□ 12.4
LSM11P83369 SMARCA1-201ENST00000371121 3564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.16□□□□□ -0.627e-7■■□□□ 12.4
LSM11P83369 TNS2-210ENST00000549700 4525 ntAPPRIS ALT2 TSL 5 BASIC11.15□□□□□ -0.637e-7■■□□□ 12.4
LSM11P83369 VPS39-201ENST00000318006 4844 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.797e-7■■□□□ 12.4
LSM11P83369 VPS39-214ENST00000614932 2835 nt9.35□□□□□ -0.917e-7■■□□□ 12.4
LSM11P83369 WDR45B-209ENST00000576517 779 ntTSL 39.12□□□□□ -0.957e-7■■□□□ 12.4
LSM11P83369 VPS39-205ENST00000562258 4160 ntTSL 28.34□□□□□ -1.077e-7■■□□□ 12.4
LSM11P83369 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.34□□□□□ -0.431e-6■■□□□ 12.4
LSM11P83369 SEMA4C-202ENST00000442264 817 ntTSL 317.73■□□□□ 0.439e-9■■□□□ 12.4
LSM11P83369 CYC1-204ENST00000533444 1832 ntTSL 1 (best)24.86■■□□□ 1.573e-15■■□□□ 12.4
LSM11P83369 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.623e-15■■□□□ 12.4
LSM11P83369 NDRG2-212ENST00000403829 1500 ntTSL 2 BASIC9.51□□□□□ -0.892e-9■■□□□ 12.4
LSM11P83369 LPCAT1-203ENST00000503252 2694 ntTSL 217.54■□□□□ 0.42e-10■■□□□ 12.4
LSM11P83369 LPCAT1-202ENST00000475622 5610 ntTSL 515.7■□□□□ 0.12e-10■■□□□ 12.4
LSM11P83369 LPCAT1-201ENST00000283415 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.332e-10■■□□□ 12.4
LSM11P83369 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.16■□□□□ 0.185e-7■■□□□ 12.4
LSM11P83369 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.285e-7■■□□□ 12.4
LSM11P83369 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC13.06□□□□□ -0.325e-7■■□□□ 12.4
LSM11P83369 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.435e-7■■□□□ 12.4
LSM11P83369 GDPD5-206ENST00000527820 3211 ntTSL 1 (best)12.34□□□□□ -0.435e-7■■□□□ 12.4
LSM11P83369 GDPD5-204ENST00000526177 4150 ntTSL 1 (best) BASIC12.26□□□□□ -0.455e-7■■□□□ 12.4
LSM11P83369 GDPD5-202ENST00000443276 3106 ntTSL 5 BASIC12.05□□□□□ -0.485e-7■■□□□ 12.4
LSM11P83369 AC006064.5-201ENST00000541782 248 ntBASIC3.9□□□□□ -1.797e-60■■□□□ 12.4
LSM11P83369 BCL6-206ENST00000450123 2003 ntTSL 1 (best) BASIC10.8□□□□□ -0.685e-7■■□□□ 12.4
LSM11P83369 BCL6-201ENST00000232014 2710 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.215e-7■■□□□ 12.4
LSM11P83369 SH3GLB2-212ENST00000483980 1015 ntTSL 224.71■■□□□ 1.555e-7■■□□□ 12.4
LSM11P83369 RHOT2-202ENST00000561711 644 ntTSL 319.21■□□□□ 0.678e-7■■□□□ 12.4
LSM11P83369 BCL6-210ENST00000496823 1138 ntTSL 312.32□□□□□ -0.441e-7■■□□□ 12.4
LSM11P83369 BCL6-211ENST00000621333 3399 ntTSL 5 BASIC10.91□□□□□ -0.661e-7■■□□□ 12.4
LSM11P83369 BCL6-207ENST00000470319 526 ntTSL 410.68□□□□□ -0.71e-7■■□□□ 12.4
LSM11P83369 BCL6-202ENST00000406870 3569 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.781e-7■■□□□ 12.4
LSM11P83369 BCL6-209ENST00000480458 342 ntTSL 57.44□□□□□ -1.221e-7■■□□□ 12.4
LSM11P83369 ASPSCR1-219ENST00000584454 1919 ntTSL 1 (best)20.94■□□□□ 0.942e-8■■□□□ 12.4
LSM11P83369 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.912e-8■■□□□ 12.4
LSM11P83369 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.852e-8■■□□□ 12.4
LSM11P83369 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.29■□□□□ 0.842e-8■■□□□ 12.4
LSM11P83369 PABPC1L-214ENST00000482486 541 ntTSL 28.83□□□□□ -15e-9■■□□□ 12.4
LSM11P83369 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.232e-6■■□□□ 12.4
LSM11P83369 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.082e-6■■□□□ 12.4
LSM11P83369 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC6.38□□□□□ -1.393e-7■■□□□ 12.4
LSM11P83369 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.582e-7■■□□□ 12.4
LSM11P83369 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.18□□□□□ -1.582e-7■■□□□ 12.4
Retrieved 100 of 11,495 protein–RNA pairs in 67.2 ms