RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 NISCHQ9Y2I1 1504 aa17.83■□□□□ 0.45
VPS39-205ENST00000562258 DCAF8L2P0C7V8 631 aa17.7■□□□□ 0.42
VPS39-205ENST00000562258 SHROOM4Q9ULL8 1493 aa16.43■□□□□ 0.22
VPS39-205ENST00000562258 SUPT5HO00267 1087 aaKnown RBP16.24■□□□□ 0.19
VPS39-205ENST00000562258 ABCC9O60706 1549 aa15.82■□□□□ 0.12
VPS39-205ENST00000562258 EHMT2Q96KQ7 1210 aa15.61■□□□□ 0.09
VPS39-205ENST00000562258 PABPN1Q86U42 306 aaKnown RBP eCLIP15.53■□□□□ 0.08
VPS39-205ENST00000562258 FAM9AQ8IZU1 332 aaPredicted RBP15.29■□□□□ 0.04
VPS39-205ENST00000562258 RANGAP1P46060 587 aaPredicted RBP15.1■□□□□ 0.01
VPS39-205ENST00000562258 TRIM41Q8WV44 630 aa14.99□□□□□ -0.01
VPS39-205ENST00000562258 TTBK1Q5TCY1 1321 aaPredicted RBP14.88□□□□□ -0.03
VPS39-205ENST00000562258 ATP1B4Q9UN42 357 aaPredicted RBP14.8□□□□□ -0.04
VPS39-205ENST00000562258 CCDC180Q9P1Z9 1646 aa14.79□□□□□ -0.04
VPS39-205ENST00000562258 UBTFP17480 764 aaKnown RBP14.76□□□□□ -0.05
VPS39-205ENST00000562258 SCRIBQ14160 1630 aa14.75□□□□□ -0.05
VPS39-205ENST00000562258 APLP2Q06481 763 aa14.74□□□□□ -0.05
VPS39-205ENST00000562258 ZCCHC6Q5VYS8 1495 aaKnown RBP14.7□□□□□ -0.06
VPS39-205ENST00000562258 RB1CC1Q8TDY2 1594 aa14.55□□□□□ -0.08
VPS39-205ENST00000562258 FBLN2P98095 1184 aa14.52□□□□□ -0.09
VPS39-205ENST00000562258 PPARGC1BQ86YN6 1023 aaKnown RBP14.49□□□□□ -0.09
VPS39-205ENST00000562258 CHIC1Q5VXU3 224 aa14.48□□□□□ -0.09
VPS39-205ENST00000562258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.46□□□□□ -0.09
VPS39-205ENST00000562258 HNRNPUL2Q1KMD3 747 aaKnown RBP14.46□□□□□ -0.09
VPS39-205ENST00000562258 LOC105371045A0A1W2PR82 267 aa14.45□□□□□ -0.1
VPS39-205ENST00000562258 NACADO15069 1562 aa14.41□□□□□ -0.1
VPS39-205ENST00000562258 PCGF6Q9BYE7 350 aa14.26□□□□□ -0.13
VPS39-205ENST00000562258 MYT1LQ9UL68 1186 aa14.25□□□□□ -0.13
VPS39-205ENST00000562258 ITGAEP38570 1179 aa14.2□□□□□ -0.14
VPS39-205ENST00000562258 CECR2Q9BXF3 1484 aa14.19□□□□□ -0.14
VPS39-205ENST00000562258 ARID3CA6NKF2 412 aa14.18□□□□□ -0.14
VPS39-205ENST00000562258 P3H3Q8IVL6 736 aa14.17□□□□□ -0.14
VPS39-205ENST00000562258 RSF1Q96T23 1441 aaPredicted RBP14.12□□□□□ -0.15
VPS39-205ENST00000562258 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
VPS39-205ENST00000562258 DCAF1Q9Y4B6 1507 aa14.06□□□□□ -0.16
VPS39-205ENST00000562258 CSRNP3Q8WYN3 585 aa14.03□□□□□ -0.16
VPS39-205ENST00000562258 CHMP7Q8WUX9 453 aaPredicted RBP13.96□□□□□ -0.17
VPS39-205ENST00000562258 ERCC6Q03468 1493 aa13.96□□□□□ -0.17
VPS39-205ENST00000562258 CCER1Q8TC90 406 aaPredicted RBP13.96□□□□□ -0.18
VPS39-205ENST00000562258 BAZ1AQ9NRL2 1556 aaPredicted RBP13.91□□□□□ -0.18
VPS39-205ENST00000562258 MROH2BQ7Z745 1585 aa13.9□□□□□ -0.18
VPS39-205ENST00000562258 FAM50AQ14320 339 aaKnown RBP13.87□□□□□ -0.19
VPS39-205ENST00000562258 DNAJC5BQ9UF47 199 aa13.82□□□□□ -0.2
VPS39-205ENST00000562258 MYO15BQ96JP2 1530 aa13.81□□□□□ -0.2
VPS39-205ENST00000562258 NPM1P06748 294 aaKnown RBP eCLIP13.8□□□□□ -0.2
VPS39-205ENST00000562258 ZNF777Q9ULD5 760 aaPredicted RBP13.79□□□□□ -0.2
VPS39-205ENST00000562258 WRNQ14191 1432 aaPredicted RBP eCLIP13.74□□□□□ -0.21
VPS39-205ENST00000562258 PLPPR3Q6T4P5 718 aa13.72□□□□□ -0.21
VPS39-205ENST00000562258 TRIM26Q12899 539 aaPredicted RBP13.72□□□□□ -0.21
VPS39-205ENST00000562258 ATAD2BQ9ULI0 1458 aa13.71□□□□□ -0.21
VPS39-205ENST00000562258 CCDC88BA6NC98 1476 aa13.69□□□□□ -0.22
VPS39-205ENST00000562258 SMARCA2P51531 1590 aa13.68□□□□□ -0.22
VPS39-205ENST00000562258 TRIM52Q96A61 297 aa13.68□□□□□ -0.22
VPS39-205ENST00000562258 KCNH8Q96L42 1107 aa13.68□□□□□ -0.22
VPS39-205ENST00000562258 TDRD9Q8NDG6 1382 aaKnown RBP13.66□□□□□ -0.22
VPS39-205ENST00000562258 WIZO95785 1651 aa13.66□□□□□ -0.22
VPS39-205ENST00000562258 PDS5BQ9NTI5 1447 aa13.66□□□□□ -0.22
VPS39-205ENST00000562258 CDK11AQ9UQ88 783 aaPredicted RBP13.64□□□□□ -0.23
VPS39-205ENST00000562258 CADPSQ9ULU8 1353 aa13.64□□□□□ -0.23
VPS39-205ENST00000562258 POLR3GLQ9BT43 218 aa13.64□□□□□ -0.23
VPS39-205ENST00000562258 CNGB1Q14028 1251 aaPredicted RBP13.61□□□□□ -0.23
VPS39-205ENST00000562258 EIF4G1Q04637 1599 aaKnown RBP13.56□□□□□ -0.24
VPS39-205ENST00000562258 TRHP20396 242 aaPredicted RBP13.56□□□□□ -0.24
VPS39-205ENST00000562258 KIF27Q86VH2 1401 aa13.56□□□□□ -0.24
VPS39-205ENST00000562258 CUX2O14529 1486 aa13.55□□□□□ -0.24
VPS39-205ENST00000562258 SMARCA4P51532 1647 aa13.55□□□□□ -0.24
VPS39-205ENST00000562258 SOGA1O94964 1423 aa13.53□□□□□ -0.24
VPS39-205ENST00000562258 NEUROD1Q13562 356 aa13.52□□□□□ -0.24
VPS39-205ENST00000562258 ABCC8Q09428 1581 aa13.52□□□□□ -0.25
VPS39-205ENST00000562258 CHIC2Q9UKJ5 165 aa13.52□□□□□ -0.25
VPS39-205ENST00000562258 ZNF326Q5BKZ1 582 aaKnown RBP13.5□□□□□ -0.25
VPS39-205ENST00000562258 ESF1Q9H501 851 aaKnown RBP13.48□□□□□ -0.25
VPS39-205ENST00000562258 CARMIL1Q5VZK9 1371 aa13.47□□□□□ -0.25
VPS39-205ENST00000562258 PLEKHD1A6NEE1 506 aa13.46□□□□□ -0.25
VPS39-205ENST00000562258 BCANQ96GW7 911 aa13.46□□□□□ -0.25
VPS39-205ENST00000562258 SLC4A1APQ9BWU0 796 aaKnown RBP13.46□□□□□ -0.26
VPS39-205ENST00000562258 TOP2AP11388 1531 aaKnown RBP13.45□□□□□ -0.26
VPS39-205ENST00000562258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.44□□□□□ -0.26
VPS39-205ENST00000562258 FANCD2Q9BXW9 1451 aa13.44□□□□□ -0.26
VPS39-205ENST00000562258 CLIP1P30622 1438 aa13.44□□□□□ -0.26
VPS39-205ENST00000562258 NESP48681 1621 aa13.44□□□□□ -0.26
VPS39-205ENST00000562258 NCAPD3P42695 1498 aa13.43□□□□□ -0.26
VPS39-205ENST00000562258 CEP164Q9UPV0 1460 aa13.43□□□□□ -0.26
VPS39-205ENST00000562258 MTUS2Q5JR59 1369 aa13.43□□□□□ -0.26
VPS39-205ENST00000562258 ZEB1P37275 1124 aaPredicted RBP13.43□□□□□ -0.26
VPS39-205ENST00000562258 CC2D2AQ9P2K1 1620 aa13.43□□□□□ -0.26
VPS39-205ENST00000562258 SENP3Q9H4L4 574 aaPredicted RBP13.41□□□□□ -0.26
VPS39-205ENST00000562258 CYB5RLQ6IPT4 315 aa13.41□□□□□ -0.26
VPS39-205ENST00000562258 CHGAP10645 457 aaKnown RBP13.4□□□□□ -0.26
VPS39-205ENST00000562258 BICRAQ9NZM4 1560 aa13.38□□□□□ -0.27
VPS39-205ENST00000562258 TSPY4P0CV99 314 aa13.38□□□□□ -0.27
VPS39-205ENST00000562258 TSPY10P0CW01 314 aa13.38□□□□□ -0.27
VPS39-205ENST00000562258 OSCARQ8IYS5 282 aa13.34□□□□□ -0.27
VPS39-205ENST00000562258 STAG3Q9UJ98 1225 aa13.33□□□□□ -0.28
VPS39-205ENST00000562258 ARID4BQ4LE39 1312 aaPredicted RBP13.33□□□□□ -0.28
VPS39-205ENST00000562258 EEA1Q15075 1411 aa13.33□□□□□ -0.28
VPS39-205ENST00000562258 GOLGA3Q08378 1498 aa13.33□□□□□ -0.28
VPS39-205ENST00000562258 JPH4Q96JJ6 628 aa13.32□□□□□ -0.28
VPS39-205ENST00000562258 RRP7BPQ9NSQ0 103 aa13.3□□□□□ -0.28
VPS39-205ENST00000562258 CEP162Q5TB80 1403 aa13.3□□□□□ -0.28
VPS39-205ENST00000562258 CFDP1Q9UEE9 299 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms