RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-231ENST00000584063 NISCHQ9Y2I1 1504 aa24.03■■□□□ 1.44
CDK5RAP3-231ENST00000584063 SLC24A1O60721 1099 aa20.84■□□□□ 0.93
CDK5RAP3-231ENST00000584063 CCDC180Q9P1Z9 1646 aa20.7■□□□□ 0.9
CDK5RAP3-231ENST00000584063 DCAF8L2P0C7V8 631 aa20.66■□□□□ 0.9
CDK5RAP3-231ENST00000584063 SHROOM4Q9ULL8 1493 aa20.44■□□□□ 0.86
CDK5RAP3-231ENST00000584063 ZCCHC6Q5VYS8 1495 aaKnown RBP20.15■□□□□ 0.82
CDK5RAP3-231ENST00000584063 ABCC9O60706 1549 aa20.09■□□□□ 0.81
CDK5RAP3-231ENST00000584063 SUPT5HO00267 1087 aaKnown RBP19.97■□□□□ 0.79
CDK5RAP3-231ENST00000584063 MYT1Q01538 1121 aa19.86■□□□□ 0.77
CDK5RAP3-231ENST00000584063 PELP1Q8IZL8 1130 aaKnown RBP19.83■□□□□ 0.76
CDK5RAP3-231ENST00000584063 PRKCSHP14314 528 aaPredicted RBP19.73■□□□□ 0.75
CDK5RAP3-231ENST00000584063 DCAF1Q9Y4B6 1507 aa19.58■□□□□ 0.72
CDK5RAP3-231ENST00000584063 SCRIBQ14160 1630 aa19.47■□□□□ 0.71
CDK5RAP3-231ENST00000584063 TTBK1Q5TCY1 1321 aaPredicted RBP19.47■□□□□ 0.71
CDK5RAP3-231ENST00000584063 NACADO15069 1562 aa19.35■□□□□ 0.69
CDK5RAP3-231ENST00000584063 DAXXQ9UER7 740 aaPredicted RBP19.27■□□□□ 0.68
CDK5RAP3-231ENST00000584063 MYO15BQ96JP2 1530 aa19.27■□□□□ 0.68
CDK5RAP3-231ENST00000584063 APLP2Q06481 763 aa19.27■□□□□ 0.67
CDK5RAP3-231ENST00000584063 RB1CC1Q8TDY2 1594 aa19.26■□□□□ 0.67
CDK5RAP3-231ENST00000584063 CHIC1Q5VXU3 224 aa19.25■□□□□ 0.67
CDK5RAP3-231ENST00000584063 ERICH6Q7L0X2 663 aa19.12■□□□□ 0.65
CDK5RAP3-231ENST00000584063 PABPN1Q86U42 306 aaKnown RBP eCLIP19.12■□□□□ 0.652e-10■■□□□ 14.3
CDK5RAP3-231ENST00000584063 PCGF6Q9BYE7 350 aa19.02■□□□□ 0.63
CDK5RAP3-231ENST00000584063 UNC13AQ9UPW8 1703 aa18.98■□□□□ 0.63
CDK5RAP3-231ENST00000584063 PPARGC1BQ86YN6 1023 aaKnown RBP18.89■□□□□ 0.62
CDK5RAP3-231ENST00000584063 CECR2Q9BXF3 1484 aa18.89■□□□□ 0.61
CDK5RAP3-231ENST00000584063 HRCP23327 699 aa18.87■□□□□ 0.61
CDK5RAP3-231ENST00000584063 LOC105371045A0A1W2PR82 267 aa18.87■□□□□ 0.61
CDK5RAP3-231ENST00000584063 RSF1Q96T23 1441 aaPredicted RBP18.85■□□□□ 0.61
CDK5RAP3-231ENST00000584063 BICRAQ9NZM4 1560 aa18.77■□□□□ 0.6
CDK5RAP3-231ENST00000584063 MROH2BQ7Z745 1585 aa18.7■□□□□ 0.58
CDK5RAP3-231ENST00000584063 EHMT2Q96KQ7 1210 aa18.6■□□□□ 0.57
CDK5RAP3-231ENST00000584063 WIZO95785 1651 aa18.58■□□□□ 0.56
CDK5RAP3-231ENST00000584063 PLPPR3Q6T4P5 718 aa18.57■□□□□ 0.56
CDK5RAP3-231ENST00000584063 FAM9AQ8IZU1 332 aaPredicted RBP18.54■□□□□ 0.56
CDK5RAP3-231ENST00000584063 BAZ1AQ9NRL2 1556 aaPredicted RBP18.5■□□□□ 0.55
CDK5RAP3-231ENST00000584063 SMARCA4P51532 1647 aa18.46■□□□□ 0.55
CDK5RAP3-231ENST00000584063 TRIM41Q8WV44 630 aa18.44■□□□□ 0.54
CDK5RAP3-231ENST00000584063 RTN4Q9NQC3 1192 aaKnown RBP18.34■□□□□ 0.53
CDK5RAP3-231ENST00000584063 NCBP3Q53F19 620 aaKnown RBP18.33■□□□□ 0.52
CDK5RAP3-231ENST00000584063 EIF5BO60841 1220 aaKnown RBP18.3■□□□□ 0.52
CDK5RAP3-231ENST00000584063 TRIM26Q12899 539 aaPredicted RBP18.25■□□□□ 0.51
CDK5RAP3-231ENST00000584063 BCL11AQ9H165 835 aa18.24■□□□□ 0.51
CDK5RAP3-231ENST00000584063 EIF4G1Q04637 1599 aaKnown RBP18.21■□□□□ 0.51
CDK5RAP3-231ENST00000584063 CCDC88BA6NC98 1476 aa18.2■□□□□ 0.5
CDK5RAP3-231ENST00000584063 ATAD2BQ9ULI0 1458 aa18.19■□□□□ 0.5
CDK5RAP3-231ENST00000584063 TOP2AP11388 1531 aaKnown RBP18.19■□□□□ 0.5
CDK5RAP3-231ENST00000584063 BAZ1BQ9UIG0 1483 aaKnown RBP18.13■□□□□ 0.49
CDK5RAP3-231ENST00000584063 SMARCA2P51531 1590 aa18.09■□□□□ 0.49
CDK5RAP3-231ENST00000584063 PLEKHG5O94827 1062 aa18.07■□□□□ 0.48
CDK5RAP3-231ENST00000584063 PEG3Q9GZU2 1588 aa18.04■□□□□ 0.48
CDK5RAP3-231ENST00000584063 CC2D2AQ9P2K1 1620 aa18■□□□□ 0.47
CDK5RAP3-231ENST00000584063 ABCC8Q09428 1581 aa17.99■□□□□ 0.47
CDK5RAP3-231ENST00000584063 DNAJC5BQ9UF47 199 aa17.95■□□□□ 0.46
CDK5RAP3-231ENST00000584063 NCAPD3P42695 1498 aa17.92■□□□□ 0.46
CDK5RAP3-231ENST00000584063 TIMELESSQ9UNS1 1208 aa17.9■□□□□ 0.46
CDK5RAP3-231ENST00000584063 HMGXB3Q12766 1538 aa17.83■□□□□ 0.45
CDK5RAP3-231ENST00000584063 KLHL34Q8N239 644 aa17.83■□□□□ 0.45
CDK5RAP3-231ENST00000584063 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.83■□□□□ 0.44
CDK5RAP3-231ENST00000584063 SOGA1O94964 1423 aa17.78■□□□□ 0.44
CDK5RAP3-231ENST00000584063 WRNQ14191 1432 aaPredicted RBP eCLIP17.78■□□□□ 0.44
CDK5RAP3-231ENST00000584063 ZEB1P37275 1124 aaPredicted RBP17.76■□□□□ 0.43
CDK5RAP3-231ENST00000584063 RUSC2Q8N2Y8 1516 aa17.74■□□□□ 0.43
CDK5RAP3-231ENST00000584063 ARXQ96QS3 562 aa17.74■□□□□ 0.43
CDK5RAP3-231ENST00000584063 SCAF1Q9H7N4 1312 aaKnown RBP17.72■□□□□ 0.43
CDK5RAP3-231ENST00000584063 UBTFP17480 764 aaKnown RBP17.68■□□□□ 0.42
CDK5RAP3-231ENST00000584063 CCER1Q8TC90 406 aaPredicted RBP17.68■□□□□ 0.42
CDK5RAP3-231ENST00000584063 RANGAP1P46060 587 aaPredicted RBP17.66■□□□□ 0.42
CDK5RAP3-231ENST00000584063 CSRNP3Q8WYN3 585 aa17.65■□□□□ 0.42
CDK5RAP3-231ENST00000584063 NESP48681 1621 aa17.65■□□□□ 0.42
CDK5RAP3-231ENST00000584063 SYNJ1O43426 1573 aa17.6■□□□□ 0.41
CDK5RAP3-231ENST00000584063 CADPSQ9ULU8 1353 aa17.58■□□□□ 0.41
CDK5RAP3-231ENST00000584063 CEP162Q5TB80 1403 aa17.58■□□□□ 0.41
CDK5RAP3-231ENST00000584063 CFTRP13569 1480 aa17.58■□□□□ 0.41
CDK5RAP3-231ENST00000584063 TULP1O00294 542 aaPredicted RBP17.55■□□□□ 0.4
CDK5RAP3-231ENST00000584063 TNIKQ9UKE5 1360 aa17.46■□□□□ 0.38
CDK5RAP3-231ENST00000584063 NEUROD1Q13562 356 aa17.45■□□□□ 0.38
CDK5RAP3-231ENST00000584063 CUX1P39880 1505 aa17.45■□□□□ 0.38
CDK5RAP3-231ENST00000584063 PODXL2Q9NZ53 605 aa17.45■□□□□ 0.38
CDK5RAP3-231ENST00000584063 FANCD2Q9BXW9 1451 aa17.44■□□□□ 0.38
CDK5RAP3-231ENST00000584063 EEA1Q15075 1411 aa17.4■□□□□ 0.38
CDK5RAP3-231ENST00000584063 DIEXFQ68CQ4 756 aaKnown RBP17.39■□□□□ 0.37
CDK5RAP3-231ENST00000584063 TOP2BQ02880 1626 aa17.39■□□□□ 0.37
CDK5RAP3-231ENST00000584063 AEBP2Q6ZN18 517 aaPredicted RBP17.37■□□□□ 0.37
CDK5RAP3-231ENST00000584063 GOLGA3Q08378 1498 aa17.36■□□□□ 0.37
CDK5RAP3-231ENST00000584063 YTHDC1Q96MU7 727 aaKnown RBP17.35■□□□□ 0.37
CDK5RAP3-231ENST00000584063 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
CDK5RAP3-231ENST00000584063 ACIN1Q9UKV3 1341 aaKnown RBP17.33■□□□□ 0.36
CDK5RAP3-231ENST00000584063 AMER1Q5JTC6 1135 aaPredicted RBP17.33■□□□□ 0.36
CDK5RAP3-231ENST00000584063 GTF3C3Q9Y5Q9 886 aa17.32■□□□□ 0.36
CDK5RAP3-231ENST00000584063 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
CDK5RAP3-231ENST00000584063 RAPGEF2Q9Y4G8 1499 aa17.3■□□□□ 0.36
CDK5RAP3-231ENST00000584063 BIVM-ERCC5R4GMW8 1640 aa17.3■□□□□ 0.36
CDK5RAP3-231ENST00000584063 KIF27Q86VH2 1401 aa17.29■□□□□ 0.36
CDK5RAP3-231ENST00000584063 CUX2O14529 1486 aa17.29■□□□□ 0.36
CDK5RAP3-231ENST00000584063 LAMC3Q9Y6N6 1575 aa17.28■□□□□ 0.36
CDK5RAP3-231ENST00000584063 CEP164Q9UPV0 1460 aa17.28■□□□□ 0.36
CDK5RAP3-231ENST00000584063 FGD5Q6ZNL6 1462 aa17.28■□□□□ 0.36
CDK5RAP3-231ENST00000584063 KIF21AQ7Z4S6 1674 aa17.27■□□□□ 0.36
CDK5RAP3-231ENST00000584063 RAD54L2Q9Y4B4 1467 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms