RNA–Protein interactions for RNA: ENST00000536708.6

CDK5RAP3-202, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2 BASIC

Gene CDK5RAP3, Length 1,975 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-202ENST00000536708 NISCHQ9Y2I1 1504 aa29.75■■■□□ 2.35
CDK5RAP3-202ENST00000536708 CCDC180Q9P1Z9 1646 aa26.12■■□□□ 1.77
CDK5RAP3-202ENST00000536708 ZCCHC6Q5VYS8 1495 aaKnown RBP24.96■■□□□ 1.59
CDK5RAP3-202ENST00000536708 ABCC9O60706 1549 aa24.95■■□□□ 1.58
CDK5RAP3-202ENST00000536708 DCAF8L2P0C7V8 631 aa24.6■■□□□ 1.53
CDK5RAP3-202ENST00000536708 DCAF1Q9Y4B6 1507 aa24.53■■□□□ 1.52
CDK5RAP3-202ENST00000536708 MYO15BQ96JP2 1530 aa24.32■■□□□ 1.48
CDK5RAP3-202ENST00000536708 NACADO15069 1562 aa24.31■■□□□ 1.48
CDK5RAP3-202ENST00000536708 RB1CC1Q8TDY2 1594 aa24.2■■□□□ 1.46
CDK5RAP3-202ENST00000536708 SHROOM4Q9ULL8 1493 aa24.15■■□□□ 1.46
CDK5RAP3-202ENST00000536708 SCRIBQ14160 1630 aa24.05■■□□□ 1.44
CDK5RAP3-202ENST00000536708 UNC13AQ9UPW8 1703 aa23.9■■□□□ 1.42
CDK5RAP3-202ENST00000536708 BICRAQ9NZM4 1560 aa23.55■■□□□ 1.36
CDK5RAP3-202ENST00000536708 PABPN1Q86U42 306 aaKnown RBP eCLIP23.41■■□□□ 1.342e-10■■□□□ 14.3
CDK5RAP3-202ENST00000536708 CECR2Q9BXF3 1484 aa23.18■■□□□ 1.3
CDK5RAP3-202ENST00000536708 MROH2BQ7Z745 1585 aa23.02■■□□□ 1.28
CDK5RAP3-202ENST00000536708 SUPT5HO00267 1087 aaKnown RBP23■■□□□ 1.27
CDK5RAP3-202ENST00000536708 SMARCA4P51532 1647 aa22.99■■□□□ 1.27
CDK5RAP3-202ENST00000536708 BAZ1AQ9NRL2 1556 aaPredicted RBP22.98■■□□□ 1.27
CDK5RAP3-202ENST00000536708 RSF1Q96T23 1441 aaPredicted RBP22.95■■□□□ 1.27
CDK5RAP3-202ENST00000536708 WIZO95785 1651 aa22.87■■□□□ 1.25
CDK5RAP3-202ENST00000536708 EIF4G1Q04637 1599 aaKnown RBP22.84■■□□□ 1.25
CDK5RAP3-202ENST00000536708 PEG3Q9GZU2 1588 aa22.66■■□□□ 1.22
CDK5RAP3-202ENST00000536708 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
CDK5RAP3-202ENST00000536708 CC2D2AQ9P2K1 1620 aa22.59■■□□□ 1.21
CDK5RAP3-202ENST00000536708 SMARCA2P51531 1590 aa22.57■■□□□ 1.2
CDK5RAP3-202ENST00000536708 TOP2AP11388 1531 aaKnown RBP22.56■■□□□ 1.2
CDK5RAP3-202ENST00000536708 BAZ1BQ9UIG0 1483 aaKnown RBP22.48■■□□□ 1.19
CDK5RAP3-202ENST00000536708 HMGXB3Q12766 1538 aa22.42■■□□□ 1.18
CDK5RAP3-202ENST00000536708 NCAPD3P42695 1498 aa22.4■■□□□ 1.18
CDK5RAP3-202ENST00000536708 CCDC88BA6NC98 1476 aa22.29■■□□□ 1.16
CDK5RAP3-202ENST00000536708 DNAJC5BQ9UF47 199 aa22.2■■□□□ 1.14
CDK5RAP3-202ENST00000536708 PRDM2Q13029 1718 aa21.91■■□□□ 1.1
CDK5RAP3-202ENST00000536708 CFTRP13569 1480 aa21.86■■□□□ 1.09
CDK5RAP3-202ENST00000536708 NESP48681 1621 aa21.85■■□□□ 1.09
CDK5RAP3-202ENST00000536708 ABCC8Q09428 1581 aa21.85■■□□□ 1.09
CDK5RAP3-202ENST00000536708 CHIC1Q5VXU3 224 aa21.83■■□□□ 1.09
CDK5RAP3-202ENST00000536708 CADPSQ9ULU8 1353 aa21.8■■□□□ 1.08
CDK5RAP3-202ENST00000536708 LAMC3Q9Y6N6 1575 aa21.75■■□□□ 1.07
CDK5RAP3-202ENST00000536708 KIF21AQ7Z4S6 1674 aa21.66■■□□□ 1.06
CDK5RAP3-202ENST00000536708 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
CDK5RAP3-202ENST00000536708 FANCD2Q9BXW9 1451 aa21.63■■□□□ 1.05
CDK5RAP3-202ENST00000536708 WRNQ14191 1432 aaPredicted RBP eCLIP21.61■■□□□ 1.05
CDK5RAP3-202ENST00000536708 TRIM41Q8WV44 630 aa21.57■■□□□ 1.04
CDK5RAP3-202ENST00000536708 CUX1P39880 1505 aa21.55■■□□□ 1.04
CDK5RAP3-202ENST00000536708 BIVM-ERCC5R4GMW8 1640 aa21.53■■□□□ 1.04
CDK5RAP3-202ENST00000536708 CEP164Q9UPV0 1460 aa21.52■■□□□ 1.04
CDK5RAP3-202ENST00000536708 TOP2BQ02880 1626 aa21.52■■□□□ 1.04
CDK5RAP3-202ENST00000536708 PDS5BQ9NTI5 1447 aa21.5■■□□□ 1.03
CDK5RAP3-202ENST00000536708 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
CDK5RAP3-202ENST00000536708 DNMBPQ6XZF7 1577 aa21.41■■□□□ 1.02
CDK5RAP3-202ENST00000536708 TOPBP1Q92547 1522 aa21.38■■□□□ 1.01
CDK5RAP3-202ENST00000536708 ERCC6Q03468 1493 aa21.37■■□□□ 1.01
CDK5RAP3-202ENST00000536708 FGD5Q6ZNL6 1462 aa21.33■■□□□ 1.01
CDK5RAP3-202ENST00000536708 THOC2Q8NI27 1593 aaKnown RBP21.33■■□□□ 1
CDK5RAP3-202ENST00000536708 MRC2Q9UBG0 1479 aa21.32■■□□□ 1
CDK5RAP3-202ENST00000536708 SOGA1O94964 1423 aa21.3■■□□□ 1
CDK5RAP3-202ENST00000536708 FAM9AQ8IZU1 332 aaPredicted RBP21.27■■□□□ 1
CDK5RAP3-202ENST00000536708 RUSC2Q8N2Y8 1516 aa21.27■■□□□ 1
CDK5RAP3-202ENST00000536708 POLA1P09884 1462 aaPredicted RBP21.27■■□□□ 1
CDK5RAP3-202ENST00000536708 WDR62O43379 1518 aa21.25■□□□□ 0.99
CDK5RAP3-202ENST00000536708 RAD54L2Q9Y4B4 1467 aa21.21■□□□□ 0.99
CDK5RAP3-202ENST00000536708 WDR97A6NE52 1622 aa21.19■□□□□ 0.98
CDK5RAP3-202ENST00000536708 TARBP1Q13395 1621 aaKnown RBP21.13■□□□□ 0.97
CDK5RAP3-202ENST00000536708 CUX2O14529 1486 aa21.12■□□□□ 0.97
CDK5RAP3-202ENST00000536708 ABCA10Q8WWZ4 1543 aa21.09■□□□□ 0.97
CDK5RAP3-202ENST00000536708 EEA1Q15075 1411 aa21.07■□□□□ 0.96
CDK5RAP3-202ENST00000536708 EHMT2Q96KQ7 1210 aa21.05■□□□□ 0.96
CDK5RAP3-202ENST00000536708 KIF27Q86VH2 1401 aa21.04■□□□□ 0.96
CDK5RAP3-202ENST00000536708 ABCA5Q8WWZ7 1642 aa21.04■□□□□ 0.96
CDK5RAP3-202ENST00000536708 LOC105371045A0A1W2PR82 267 aa21.03■□□□□ 0.96
CDK5RAP3-202ENST00000536708 IFT140Q96RY7 1462 aa20.98■□□□□ 0.95
CDK5RAP3-202ENST00000536708 TDRD9Q8NDG6 1382 aaKnown RBP20.98■□□□□ 0.95
CDK5RAP3-202ENST00000536708 ZNF608Q9ULD9 1512 aaPredicted RBP20.97■□□□□ 0.95
CDK5RAP3-202ENST00000536708 CSRNP3Q8WYN3 585 aa20.97■□□□□ 0.95
CDK5RAP3-202ENST00000536708 PBRM1Q86U86 1689 aa20.96■□□□□ 0.95
CDK5RAP3-202ENST00000536708 EIF4G3O43432 1585 aaKnown RBP20.95■□□□□ 0.94
CDK5RAP3-202ENST00000536708 KIF21BO75037 1637 aa20.94■□□□□ 0.94
CDK5RAP3-202ENST00000536708 AQRO60306 1485 aaKnown RBP eCLIP20.92■□□□□ 0.941e-7■■■■□ 24.7
CDK5RAP3-202ENST00000536708 GAPVD1Q14C86 1478 aa20.92■□□□□ 0.94
CDK5RAP3-202ENST00000536708 RAPGEF2Q9Y4G8 1499 aa20.88■□□□□ 0.93
CDK5RAP3-202ENST00000536708 IGF1RP08069 1367 aa20.87■□□□□ 0.93
CDK5RAP3-202ENST00000536708 PRXQ9BXM0 1461 aa20.87■□□□□ 0.93
CDK5RAP3-202ENST00000536708 GOLGA3Q08378 1498 aa20.85■□□□□ 0.93
CDK5RAP3-202ENST00000536708 CUL7Q14999 1698 aa20.85■□□□□ 0.93
CDK5RAP3-202ENST00000536708 ERICH3Q5RHP9 1530 aa20.84■□□□□ 0.93
CDK5RAP3-202ENST00000536708 ADAMTS12P58397 1594 aa20.78■□□□□ 0.92
CDK5RAP3-202ENST00000536708 GRIN2BQ13224 1484 aa20.78■□□□□ 0.92
CDK5RAP3-202ENST00000536708 CARMIL1Q5VZK9 1371 aa20.77■□□□□ 0.91
CDK5RAP3-202ENST00000536708 SNAPC4Q5SXM2 1469 aa20.74■□□□□ 0.91
CDK5RAP3-202ENST00000536708 UBTFP17480 764 aaKnown RBP20.71■□□□□ 0.91
CDK5RAP3-202ENST00000536708 TNIKQ9UKE5 1360 aa20.67■□□□□ 0.9
CDK5RAP3-202ENST00000536708 CTTNBP2Q8WZ74 1663 aa20.66■□□□□ 0.9
CDK5RAP3-202ENST00000536708 FHAD1B1AJZ9 1412 aa20.64■□□□□ 0.9
CDK5RAP3-202ENST00000536708 HRCP23327 699 aa20.64■□□□□ 0.89
CDK5RAP3-202ENST00000536708 MAGI1Q96QZ7 1491 aaPredicted RBP20.64■□□□□ 0.89
CDK5RAP3-202ENST00000536708 CEP162Q5TB80 1403 aa20.63■□□□□ 0.89
CDK5RAP3-202ENST00000536708 CHD1O14646 1710 aa20.59■□□□□ 0.89
CDK5RAP3-202ENST00000536708 SYNJ2O15056 1496 aa20.57■□□□□ 0.88
CDK5RAP3-202ENST00000536708 GRIN2AQ12879 1464 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms