RNA–Protein interactions for RNA: ENST00000584168.5

CDK5RAP3-232, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 2,684 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-232ENST00000584168 NISCHQ9Y2I1 1504 aa24.6■■□□□ 1.53
CDK5RAP3-232ENST00000584168 CCDC180Q9P1Z9 1646 aa21.65■■□□□ 1.06
CDK5RAP3-232ENST00000584168 PELP1Q8IZL8 1130 aaKnown RBP21.16■□□□□ 0.98
CDK5RAP3-232ENST00000584168 DCAF8L2P0C7V8 631 aa20.84■□□□□ 0.93
CDK5RAP3-232ENST00000584168 MYT1Q01538 1121 aa20.75■□□□□ 0.91
CDK5RAP3-232ENST00000584168 ABCC9O60706 1549 aa20.63■□□□□ 0.89
CDK5RAP3-232ENST00000584168 ZCCHC6Q5VYS8 1495 aaKnown RBP20.61■□□□□ 0.89
CDK5RAP3-232ENST00000584168 SHROOM4Q9ULL8 1493 aa20.47■□□□□ 0.87
CDK5RAP3-232ENST00000584168 DCAF1Q9Y4B6 1507 aa20.4■□□□□ 0.86
CDK5RAP3-232ENST00000584168 MYO15BQ96JP2 1530 aa20.28■□□□□ 0.84
CDK5RAP3-232ENST00000584168 NACADO15069 1562 aa20.22■□□□□ 0.83
CDK5RAP3-232ENST00000584168 RB1CC1Q8TDY2 1594 aa20.11■□□□□ 0.81
CDK5RAP3-232ENST00000584168 HRCP23327 699 aa19.89■□□□□ 0.78
CDK5RAP3-232ENST00000584168 TTBK1Q5TCY1 1321 aaPredicted RBP19.89■□□□□ 0.77
CDK5RAP3-232ENST00000584168 SCRIBQ14160 1630 aa19.79■□□□□ 0.76
CDK5RAP3-232ENST00000584168 UNC13AQ9UPW8 1703 aa19.67■□□□□ 0.74
CDK5RAP3-232ENST00000584168 SUPT5HO00267 1087 aaKnown RBP19.66■□□□□ 0.74
CDK5RAP3-232ENST00000584168 PABPN1Q86U42 306 aaKnown RBP eCLIP19.54■□□□□ 0.722e-10■■□□□ 14.3
CDK5RAP3-232ENST00000584168 SCAF1Q9H7N4 1312 aaKnown RBP19.49■□□□□ 0.71
CDK5RAP3-232ENST00000584168 BICRAQ9NZM4 1560 aa19.47■□□□□ 0.71
CDK5RAP3-232ENST00000584168 PRKCSHP14314 528 aaPredicted RBP19.43■□□□□ 0.7
CDK5RAP3-232ENST00000584168 PPARGC1BQ86YN6 1023 aaKnown RBP19.34■□□□□ 0.69
CDK5RAP3-232ENST00000584168 CECR2Q9BXF3 1484 aa19.21■□□□□ 0.67
CDK5RAP3-232ENST00000584168 BCL11AQ9H165 835 aa19.15■□□□□ 0.66
CDK5RAP3-232ENST00000584168 BAZ1AQ9NRL2 1556 aaPredicted RBP19.04■□□□□ 0.64
CDK5RAP3-232ENST00000584168 RSF1Q96T23 1441 aaPredicted RBP19.03■□□□□ 0.64
CDK5RAP3-232ENST00000584168 MROH2BQ7Z745 1585 aa19■□□□□ 0.63
CDK5RAP3-232ENST00000584168 ERICH6Q7L0X2 663 aa19■□□□□ 0.63
CDK5RAP3-232ENST00000584168 SMARCA4P51532 1647 aa18.98■□□□□ 0.63
CDK5RAP3-232ENST00000584168 FAM9AQ8IZU1 332 aaPredicted RBP18.93■□□□□ 0.62
CDK5RAP3-232ENST00000584168 EIF4G1Q04637 1599 aaKnown RBP18.92■□□□□ 0.62
CDK5RAP3-232ENST00000584168 APLP2Q06481 763 aa18.9■□□□□ 0.62
CDK5RAP3-232ENST00000584168 WIZO95785 1651 aa18.84■□□□□ 0.61
CDK5RAP3-232ENST00000584168 PCGF6Q9BYE7 350 aa18.8■□□□□ 0.6
CDK5RAP3-232ENST00000584168 PEG3Q9GZU2 1588 aa18.79■□□□□ 0.6
CDK5RAP3-232ENST00000584168 SMARCA2P51531 1590 aa18.75■□□□□ 0.59
CDK5RAP3-232ENST00000584168 ATAD2BQ9ULI0 1458 aa18.73■□□□□ 0.59
CDK5RAP3-232ENST00000584168 CC2D2AQ9P2K1 1620 aa18.71■□□□□ 0.59
CDK5RAP3-232ENST00000584168 CENPBP07199 599 aaPredicted RBP18.71■□□□□ 0.59
CDK5RAP3-232ENST00000584168 ACIN1Q9UKV3 1341 aaKnown RBP18.65■□□□□ 0.58
CDK5RAP3-232ENST00000584168 TOP2AP11388 1531 aaKnown RBP18.64■□□□□ 0.57
CDK5RAP3-232ENST00000584168 NCAPD3P42695 1498 aa18.64■□□□□ 0.57
CDK5RAP3-232ENST00000584168 BAZ1BQ9UIG0 1483 aaKnown RBP18.61■□□□□ 0.57
CDK5RAP3-232ENST00000584168 CHIC1Q5VXU3 224 aa18.61■□□□□ 0.57
CDK5RAP3-232ENST00000584168 HMGXB3Q12766 1538 aa18.61■□□□□ 0.57
CDK5RAP3-232ENST00000584168 GTF3C3Q9Y5Q9 886 aa18.54■□□□□ 0.56
CDK5RAP3-232ENST00000584168 NEUROD1Q13562 356 aa18.5■□□□□ 0.55
CDK5RAP3-232ENST00000584168 CCDC88BA6NC98 1476 aa18.44■□□□□ 0.54
CDK5RAP3-232ENST00000584168 SLC24A1O60721 1099 aa18.44■□□□□ 0.54
CDK5RAP3-232ENST00000584168 DNAJC5BQ9UF47 199 aa18.43■□□□□ 0.54
CDK5RAP3-232ENST00000584168 ZEB1P37275 1124 aaPredicted RBP18.33■□□□□ 0.52
CDK5RAP3-232ENST00000584168 ANP32EQ9BTT0 268 aa18.31■□□□□ 0.52
CDK5RAP3-232ENST00000584168 TRIM41Q8WV44 630 aa18.28■□□□□ 0.52
CDK5RAP3-232ENST00000584168 EHMT2Q96KQ7 1210 aa18.25■□□□□ 0.51
CDK5RAP3-232ENST00000584168 ABCC8Q09428 1581 aa18.17■□□□□ 0.5
CDK5RAP3-232ENST00000584168 CFTRP13569 1480 aa18.14■□□□□ 0.49
CDK5RAP3-232ENST00000584168 LOC105371045A0A1W2PR82 267 aa18.13■□□□□ 0.49
CDK5RAP3-232ENST00000584168 CADPSQ9ULU8 1353 aa18.13■□□□□ 0.49
CDK5RAP3-232ENST00000584168 CSRNP3Q8WYN3 585 aa18.12■□□□□ 0.49
CDK5RAP3-232ENST00000584168 LAMC3Q9Y6N6 1575 aa18.08■□□□□ 0.48
CDK5RAP3-232ENST00000584168 PRDM2Q13029 1718 aa18.07■□□□□ 0.48
CDK5RAP3-232ENST00000584168 NESP48681 1621 aa18.01■□□□□ 0.47
CDK5RAP3-232ENST00000584168 PDS5BQ9NTI5 1447 aa17.93■□□□□ 0.46
CDK5RAP3-232ENST00000584168 FANCD2Q9BXW9 1451 aa17.92■□□□□ 0.46
CDK5RAP3-232ENST00000584168 TRIM26Q12899 539 aaPredicted RBP17.92■□□□□ 0.46
CDK5RAP3-232ENST00000584168 WRNQ14191 1432 aaPredicted RBP eCLIP17.9■□□□□ 0.46
CDK5RAP3-232ENST00000584168 CEP164Q9UPV0 1460 aa17.85■□□□□ 0.45
CDK5RAP3-232ENST00000584168 DAXXQ9UER7 740 aaPredicted RBP17.85■□□□□ 0.45
CDK5RAP3-232ENST00000584168 SOGA1O94964 1423 aa17.84■□□□□ 0.45
CDK5RAP3-232ENST00000584168 KIF21AQ7Z4S6 1674 aa17.84■□□□□ 0.45
CDK5RAP3-232ENST00000584168 SYNJ1O43426 1573 aa17.84■□□□□ 0.45
CDK5RAP3-232ENST00000584168 RUSC2Q8N2Y8 1516 aa17.83■□□□□ 0.44
CDK5RAP3-232ENST00000584168 EIF5BO60841 1220 aaKnown RBP17.83■□□□□ 0.44
CDK5RAP3-232ENST00000584168 ANO8Q9HCE9 1232 aaPredicted RBP17.78■□□□□ 0.44
CDK5RAP3-232ENST00000584168 ERCC6Q03468 1493 aa17.77■□□□□ 0.43
CDK5RAP3-232ENST00000584168 TOP2BQ02880 1626 aa17.76■□□□□ 0.43
CDK5RAP3-232ENST00000584168 BIVM-ERCC5R4GMW8 1640 aa17.76■□□□□ 0.43
CDK5RAP3-232ENST00000584168 CUX1P39880 1505 aa17.76■□□□□ 0.43
CDK5RAP3-232ENST00000584168 DNMBPQ6XZF7 1577 aa17.73■□□□□ 0.43
CDK5RAP3-232ENST00000584168 MRC2Q9UBG0 1479 aa17.72■□□□□ 0.43
CDK5RAP3-232ENST00000584168 UBE2Q2Q8WVN8 375 aa17.71■□□□□ 0.43
CDK5RAP3-232ENST00000584168 URB2Q14146 1524 aaKnown RBP17.71■□□□□ 0.42
CDK5RAP3-232ENST00000584168 TOPBP1Q92547 1522 aa17.7■□□□□ 0.42
CDK5RAP3-232ENST00000584168 RANGAP1P46060 587 aaPredicted RBP17.65■□□□□ 0.42
CDK5RAP3-232ENST00000584168 THOC2Q8NI27 1593 aaKnown RBP17.65■□□□□ 0.42
CDK5RAP3-232ENST00000584168 WDR62O43379 1518 aa17.65■□□□□ 0.42
CDK5RAP3-232ENST00000584168 DIEXFQ68CQ4 756 aaKnown RBP17.63■□□□□ 0.41
CDK5RAP3-232ENST00000584168 TSHZ2Q9NRE2 1034 aa17.63■□□□□ 0.41
CDK5RAP3-232ENST00000584168 FGD5Q6ZNL6 1462 aa17.61■□□□□ 0.41
CDK5RAP3-232ENST00000584168 POLA1P09884 1462 aaPredicted RBP17.58■□□□□ 0.4
CDK5RAP3-232ENST00000584168 UBTFP17480 764 aaKnown RBP17.58■□□□□ 0.4
CDK5RAP3-232ENST00000584168 RAD54L2Q9Y4B4 1467 aa17.57■□□□□ 0.4
CDK5RAP3-232ENST00000584168 CUX2O14529 1486 aa17.49■□□□□ 0.39
CDK5RAP3-232ENST00000584168 ABCA10Q8WWZ4 1543 aa17.48■□□□□ 0.39
CDK5RAP3-232ENST00000584168 EEA1Q15075 1411 aa17.48■□□□□ 0.39
CDK5RAP3-232ENST00000584168 WDR97A6NE52 1622 aa17.46■□□□□ 0.39
CDK5RAP3-232ENST00000584168 TARBP1Q13395 1621 aaKnown RBP17.46■□□□□ 0.39
CDK5RAP3-232ENST00000584168 TDRD9Q8NDG6 1382 aaKnown RBP17.46■□□□□ 0.39
CDK5RAP3-232ENST00000584168 IFT140Q96RY7 1462 aa17.46■□□□□ 0.39
CDK5RAP3-232ENST00000584168 PLEKHG5O94827 1062 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms