RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 NISCHQ9Y2I1 1504 aa20.21■□□□□ 0.83
VPS39-214ENST00000614932 PELP1Q8IZL8 1130 aaKnown RBP18.02■□□□□ 0.47
VPS39-214ENST00000614932 MYT1Q01538 1121 aa17.62■□□□□ 0.41
VPS39-214ENST00000614932 SHROOM4Q9ULL8 1493 aa17.43■□□□□ 0.38
VPS39-214ENST00000614932 DCAF8L2P0C7V8 631 aa17.27■□□□□ 0.35
VPS39-214ENST00000614932 HRCP23327 699 aa17.26■□□□□ 0.35
VPS39-214ENST00000614932 CCDC180Q9P1Z9 1646 aa17.13■□□□□ 0.33
VPS39-214ENST00000614932 ZCCHC6Q5VYS8 1495 aaKnown RBP17.02■□□□□ 0.31
VPS39-214ENST00000614932 SUPT5HO00267 1087 aaKnown RBP16.98■□□□□ 0.31
VPS39-214ENST00000614932 TTBK1Q5TCY1 1321 aaPredicted RBP16.82■□□□□ 0.28
VPS39-214ENST00000614932 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
VPS39-214ENST00000614932 PPARGC1BQ86YN6 1023 aaKnown RBP16.75■□□□□ 0.27
VPS39-214ENST00000614932 ABCC9O60706 1549 aa16.43■□□□□ 0.22
VPS39-214ENST00000614932 PCGF6Q9BYE7 350 aa16.42■□□□□ 0.22
VPS39-214ENST00000614932 DCAF1Q9Y4B6 1507 aa16.41■□□□□ 0.22
VPS39-214ENST00000614932 SCRIBQ14160 1630 aa16.3■□□□□ 0.2
VPS39-214ENST00000614932 PRKCSHP14314 528 aaPredicted RBP16.24■□□□□ 0.19
VPS39-214ENST00000614932 CHIC1Q5VXU3 224 aa16.23■□□□□ 0.19
VPS39-214ENST00000614932 BCL11AQ9H165 835 aa16.22■□□□□ 0.19
VPS39-214ENST00000614932 ACIN1Q9UKV3 1341 aaKnown RBP16.13■□□□□ 0.17
VPS39-214ENST00000614932 MYO15BQ96JP2 1530 aa16.11■□□□□ 0.17
VPS39-214ENST00000614932 CENPBP07199 599 aaPredicted RBP16.04■□□□□ 0.16
VPS39-214ENST00000614932 FAM9AQ8IZU1 332 aaPredicted RBP16.04■□□□□ 0.16
VPS39-214ENST00000614932 GTF3C3Q9Y5Q9 886 aa16■□□□□ 0.15
VPS39-214ENST00000614932 NEUROD1Q13562 356 aa15.99■□□□□ 0.15
VPS39-214ENST00000614932 ZEB1P37275 1124 aaPredicted RBP15.98■□□□□ 0.15
VPS39-214ENST00000614932 RSF1Q96T23 1441 aaPredicted RBP15.97■□□□□ 0.15
VPS39-214ENST00000614932 ERICH6Q7L0X2 663 aa15.97■□□□□ 0.15
VPS39-214ENST00000614932 NACADO15069 1562 aa15.97■□□□□ 0.15
VPS39-214ENST00000614932 CECR2Q9BXF3 1484 aa15.92■□□□□ 0.14
VPS39-214ENST00000614932 LOC105371045A0A1W2PR82 267 aa15.89■□□□□ 0.13
VPS39-214ENST00000614932 APLP2Q06481 763 aa15.82■□□□□ 0.12
VPS39-214ENST00000614932 RB1CC1Q8TDY2 1594 aa15.8■□□□□ 0.12
VPS39-214ENST00000614932 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
VPS39-214ENST00000614932 EHMT2Q96KQ7 1210 aa15.78■□□□□ 0.12
VPS39-214ENST00000614932 PABPN1Q86U42 306 aaKnown RBP eCLIP15.78■□□□□ 0.12
VPS39-214ENST00000614932 TRIM26Q12899 539 aaPredicted RBP15.76■□□□□ 0.11
VPS39-214ENST00000614932 TRIM41Q8WV44 630 aa15.72■□□□□ 0.11
VPS39-214ENST00000614932 WIZO95785 1651 aa15.69■□□□□ 0.1
VPS39-214ENST00000614932 ANP32EQ9BTT0 268 aa15.69■□□□□ 0.1
VPS39-214ENST00000614932 UNC13AQ9UPW8 1703 aa15.56■□□□□ 0.08
VPS39-214ENST00000614932 BAZ1AQ9NRL2 1556 aaPredicted RBP15.52■□□□□ 0.07
VPS39-214ENST00000614932 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
VPS39-214ENST00000614932 SMARCA4P51532 1647 aa15.43■□□□□ 0.06
VPS39-214ENST00000614932 BICRAQ9NZM4 1560 aa15.41■□□□□ 0.06
VPS39-214ENST00000614932 DIEXFQ68CQ4 756 aaKnown RBP15.38■□□□□ 0.05
VPS39-214ENST00000614932 CCDC88BA6NC98 1476 aa15.37■□□□□ 0.05
VPS39-214ENST00000614932 TOP2AP11388 1531 aaKnown RBP15.34■□□□□ 0.05
VPS39-214ENST00000614932 ABCC8Q09428 1581 aa15.33■□□□□ 0.04
VPS39-214ENST00000614932 SMARCA2P51531 1590 aa15.28■□□□□ 0.04
VPS39-214ENST00000614932 EIF4G1Q04637 1599 aaKnown RBP15.21■□□□□ 0.03
VPS39-214ENST00000614932 TSHZ2Q9NRE2 1034 aa15.21■□□□□ 0.03
VPS39-214ENST00000614932 SOGA1O94964 1423 aa15.15■□□□□ 0.02
VPS39-214ENST00000614932 YTHDC1Q96MU7 727 aaKnown RBP15.15■□□□□ 0.02
VPS39-214ENST00000614932 ATAD2BQ9ULI0 1458 aa15.14■□□□□ 0.01
VPS39-214ENST00000614932 BAZ1BQ9UIG0 1483 aaKnown RBP15.12■□□□□ 0.01
VPS39-214ENST00000614932 CLSPNQ9HAW4 1339 aa15.11■□□□□ 0.01
VPS39-214ENST00000614932 SLC24A1O60721 1099 aa15.11■□□□□ 0.01
VPS39-214ENST00000614932 RUSC2Q8N2Y8 1516 aa15.1■□□□□ 0.01
VPS39-214ENST00000614932 ANO8Q9HCE9 1232 aaPredicted RBP15.08■□□□□ 0.01
VPS39-214ENST00000614932 UBTFP17480 764 aaKnown RBP15.06■□□□□ 0
VPS39-214ENST00000614932 SUPT16HQ9Y5B9 1047 aaKnown RBP15.04■□□□□ -0
VPS39-214ENST00000614932 RANGAP1P46060 587 aaPredicted RBP15.03■□□□□ -0
VPS39-214ENST00000614932 PEG3Q9GZU2 1588 aa15.03■□□□□ -0
VPS39-214ENST00000614932 WRNQ14191 1432 aaPredicted RBP eCLIP15.03■□□□□ -0
VPS39-214ENST00000614932 UBE2Q2Q8WVN8 375 aa14.99□□□□□ -0.01
VPS39-214ENST00000614932 CCER1Q8TC90 406 aaPredicted RBP14.96□□□□□ -0.02
VPS39-214ENST00000614932 SYNJ1O43426 1573 aa14.94□□□□□ -0.02
VPS39-214ENST00000614932 CEP162Q5TB80 1403 aa14.91□□□□□ -0.02
VPS39-214ENST00000614932 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.91□□□□□ -0.02
VPS39-214ENST00000614932 EIF5BO60841 1220 aaKnown RBP14.91□□□□□ -0.02
VPS39-214ENST00000614932 ZNF316A6NFI3 1004 aaPredicted RBP14.9□□□□□ -0.02
VPS39-214ENST00000614932 MIER1Q8N108 512 aa14.87□□□□□ -0.03
VPS39-214ENST00000614932 MYT1LQ9UL68 1186 aa14.85□□□□□ -0.03
VPS39-214ENST00000614932 TNIKQ9UKE5 1360 aa14.83□□□□□ -0.04
VPS39-214ENST00000614932 NCAPD3P42695 1498 aa14.82□□□□□ -0.04
VPS39-214ENST00000614932 SALL2Q9Y467 1007 aaPredicted RBP14.82□□□□□ -0.04
VPS39-214ENST00000614932 EEA1Q15075 1411 aa14.8□□□□□ -0.04
VPS39-214ENST00000614932 ERICH6BQ5W0A0 696 aa14.79□□□□□ -0.04
VPS39-214ENST00000614932 GOLGA3Q08378 1498 aa14.79□□□□□ -0.04
VPS39-214ENST00000614932 DAXXQ9UER7 740 aaPredicted RBP14.78□□□□□ -0.04
VPS39-214ENST00000614932 RBM19Q9Y4C8 960 aaKnown RBP14.77□□□□□ -0.04
VPS39-214ENST00000614932 RAPGEF2Q9Y4G8 1499 aa14.75□□□□□ -0.05
VPS39-214ENST00000614932 HMGXB3Q12766 1538 aa14.74□□□□□ -0.05
VPS39-214ENST00000614932 DEKP35659 375 aaKnown RBP14.73□□□□□ -0.05
VPS39-214ENST00000614932 CEP164Q9UPV0 1460 aa14.72□□□□□ -0.05
VPS39-214ENST00000614932 CCDC136Q96JN2 1154 aa14.71□□□□□ -0.05
VPS39-214ENST00000614932 MSH5O43196 834 aa14.7□□□□□ -0.06
VPS39-214ENST00000614932 TOP2BQ02880 1626 aa14.69□□□□□ -0.06
VPS39-214ENST00000614932 CLIP1P30622 1438 aa14.69□□□□□ -0.06
VPS39-214ENST00000614932 CUX1P39880 1505 aa14.69□□□□□ -0.06
VPS39-214ENST00000614932 CFTRP13569 1480 aa14.67□□□□□ -0.06
VPS39-214ENST00000614932 CC2D2AQ9P2K1 1620 aa14.66□□□□□ -0.06
VPS39-214ENST00000614932 HNRNPUL2Q1KMD3 747 aaKnown RBP14.64□□□□□ -0.07
VPS39-214ENST00000614932 DNAJC5BQ9UF47 199 aa14.63□□□□□ -0.07
VPS39-214ENST00000614932 KIF21BO75037 1637 aa14.62□□□□□ -0.07
VPS39-214ENST00000614932 PKNOX2Q96KN3 472 aa14.61□□□□□ -0.07
VPS39-214ENST00000614932 CADPSQ9ULU8 1353 aa14.61□□□□□ -0.07
VPS39-214ENST00000614932 BIVM-ERCC5R4GMW8 1640 aa14.6□□□□□ -0.07
VPS39-214ENST00000614932 FANCIQ9NVI1 1328 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 144.6 ms