RNA–Protein interactions for RNA: ENST00000474766.1

SH3D21-202, Transcript of SH3 domain containing 21, humanhuman

TSL 1 (best)

Gene SH3D21, Length 2,043 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3D21-202ENST00000474766 NISCHQ9Y2I1 1504 aa46.68■■■■■ 5.06
SH3D21-202ENST00000474766 CCDC180Q9P1Z9 1646 aa41.4■■■■■ 4.22
SH3D21-202ENST00000474766 ABCC9O60706 1549 aa40.3■■■■■ 4.04
SH3D21-202ENST00000474766 ZCCHC6Q5VYS8 1495 aaKnown RBP38.95■■■■□ 3.83
SH3D21-202ENST00000474766 DCAF8L2P0C7V8 631 aa38.85■■■■□ 3.81
SH3D21-202ENST00000474766 NACADO15069 1562 aa38.83■■■■□ 3.81
SH3D21-202ENST00000474766 RB1CC1Q8TDY2 1594 aa38.83■■■■□ 3.81
SH3D21-202ENST00000474766 MYO15BQ96JP2 1530 aa38.66■■■■□ 3.78
SH3D21-202ENST00000474766 DCAF1Q9Y4B6 1507 aa38.6■■■■□ 3.77
SH3D21-202ENST00000474766 UNC13AQ9UPW8 1703 aa38.09■■■■□ 3.69
SH3D21-202ENST00000474766 SCRIBQ14160 1630 aa37.84■■■■□ 3.65
SH3D21-202ENST00000474766 BICRAQ9NZM4 1560 aa37.73■■■■□ 3.63
SH3D21-202ENST00000474766 PABPN1Q86U42 306 aaKnown RBP eCLIP37.68■■■■□ 3.62
SH3D21-202ENST00000474766 SHROOM4Q9ULL8 1493 aa37.23■■■■□ 3.55
SH3D21-202ENST00000474766 DNAJC5BQ9UF47 199 aa36.8■■■■□ 3.48
SH3D21-202ENST00000474766 EIF4G1Q04637 1599 aaKnown RBP36.67■■■■□ 3.46
SH3D21-202ENST00000474766 CC2D2AQ9P2K1 1620 aa36.48■■■■□ 3.43
SH3D21-202ENST00000474766 CECR2Q9BXF3 1484 aa36.38■■■■□ 3.41
SH3D21-202ENST00000474766 SUPT5HO00267 1087 aaKnown RBP36.29■■■■□ 3.4
SH3D21-202ENST00000474766 SMARCA4P51532 1647 aa36.2■■■■□ 3.39
SH3D21-202ENST00000474766 BAZ1AQ9NRL2 1556 aaPredicted RBP36.14■■■■□ 3.38
SH3D21-202ENST00000474766 MROH2BQ7Z745 1585 aa36.02■■■■□ 3.36
SH3D21-202ENST00000474766 ATAD2BQ9ULI0 1458 aa35.91■■■■□ 3.34
SH3D21-202ENST00000474766 SMARCA2P51531 1590 aa35.85■■■■□ 3.33
SH3D21-202ENST00000474766 NCAPD3P42695 1498 aa35.83■■■■□ 3.33
SH3D21-202ENST00000474766 PEG3Q9GZU2 1588 aa35.82■■■■□ 3.32
SH3D21-202ENST00000474766 HMGXB3Q12766 1538 aa35.7■■■■□ 3.3
SH3D21-202ENST00000474766 WIZO95785 1651 aa35.66■■■■□ 3.3
SH3D21-202ENST00000474766 RSF1Q96T23 1441 aaPredicted RBP35.65■■■■□ 3.3
SH3D21-202ENST00000474766 BAZ1BQ9UIG0 1483 aaKnown RBP35.62■■■■□ 3.29
SH3D21-202ENST00000474766 CHIC1Q5VXU3 224 aa35.35■■■■□ 3.25
SH3D21-202ENST00000474766 TOP2AP11388 1531 aaKnown RBP35.24■■■■□ 3.23
SH3D21-202ENST00000474766 HRCP23327 699 aa35.03■■■■□ 3.2
SH3D21-202ENST00000474766 NESP48681 1621 aa34.98■■■■□ 3.19
SH3D21-202ENST00000474766 LAMC3Q9Y6N6 1575 aa34.86■■■■□ 3.17
SH3D21-202ENST00000474766 CCDC88BA6NC98 1476 aa34.83■■■■□ 3.17
SH3D21-202ENST00000474766 CADPSQ9ULU8 1353 aa34.79■■■■□ 3.16
SH3D21-202ENST00000474766 ERCC6Q03468 1493 aa34.67■■■■□ 3.14
SH3D21-202ENST00000474766 CFTRP13569 1480 aa34.66■■■■□ 3.14
SH3D21-202ENST00000474766 KIF21AQ7Z4S6 1674 aa34.6■■■■□ 3.13
SH3D21-202ENST00000474766 PDS5BQ9NTI5 1447 aa34.57■■■■□ 3.12
SH3D21-202ENST00000474766 PRDM2Q13029 1718 aa34.48■■■■□ 3.11
SH3D21-202ENST00000474766 FANCD2Q9BXW9 1451 aa34.42■■■■□ 3.1
SH3D21-202ENST00000474766 THOC2Q8NI27 1593 aaKnown RBP34.4■■■■□ 3.1
SH3D21-202ENST00000474766 CEP164Q9UPV0 1460 aa34.35■■■■□ 3.09
SH3D21-202ENST00000474766 MRC2Q9UBG0 1479 aa34.25■■■■□ 3.07
SH3D21-202ENST00000474766 CUX2O14529 1486 aa34.21■■■■□ 3.07
SH3D21-202ENST00000474766 PCGF6Q9BYE7 350 aa34.19■■■■□ 3.06
SH3D21-202ENST00000474766 WDR62O43379 1518 aa34.15■■■■□ 3.06
SH3D21-202ENST00000474766 LOC105371045A0A1W2PR82 267 aa34.11■■■■□ 3.05
SH3D21-202ENST00000474766 URB2Q14146 1524 aaKnown RBP34.1■■■■□ 3.05
SH3D21-202ENST00000474766 TRIM41Q8WV44 630 aa33.97■■■■□ 3.03
SH3D21-202ENST00000474766 TOPBP1Q92547 1522 aa33.91■■■■□ 3.02
SH3D21-202ENST00000474766 DNMBPQ6XZF7 1577 aa33.88■■■■□ 3.01
SH3D21-202ENST00000474766 PPARGC1BQ86YN6 1023 aaKnown RBP33.86■■■■□ 3.01
SH3D21-202ENST00000474766 ABCC8Q09428 1581 aa33.84■■■■□ 3.01
SH3D21-202ENST00000474766 CUX1P39880 1505 aa33.77■■■■□ 3
SH3D21-202ENST00000474766 POLA1P09884 1462 aaPredicted RBP33.65■■■□□ 2.98
SH3D21-202ENST00000474766 FGD5Q6ZNL6 1462 aa33.6■■■□□ 2.97
SH3D21-202ENST00000474766 IFT140Q96RY7 1462 aa33.6■■■□□ 2.97
SH3D21-202ENST00000474766 WRNQ14191 1432 aaPredicted RBP eCLIP33.59■■■□□ 2.972e-6■■■■□ 22.3
SH3D21-202ENST00000474766 SYNJ1O43426 1573 aa33.57■■■□□ 2.96
SH3D21-202ENST00000474766 PELP1Q8IZL8 1130 aaKnown RBP33.57■■■□□ 2.96
SH3D21-202ENST00000474766 TARBP1Q13395 1621 aaKnown RBP33.55■■■□□ 2.96
SH3D21-202ENST00000474766 TRIM26Q12899 539 aaPredicted RBP33.53■■■□□ 2.96
SH3D21-202ENST00000474766 BIVM-ERCC5R4GMW8 1640 aa33.53■■■□□ 2.96
SH3D21-202ENST00000474766 TOP2BQ02880 1626 aa33.52■■■□□ 2.96
SH3D21-202ENST00000474766 RAD54L2Q9Y4B4 1467 aa33.51■■■□□ 2.95
SH3D21-202ENST00000474766 ZNF608Q9ULD9 1512 aaPredicted RBP33.5■■■□□ 2.95
SH3D21-202ENST00000474766 FAM9AQ8IZU1 332 aaPredicted RBP33.47■■■□□ 2.95
SH3D21-202ENST00000474766 SOGA1O94964 1423 aa33.46■■■□□ 2.95
SH3D21-202ENST00000474766 EIF4G3O43432 1585 aaKnown RBP33.39■■■□□ 2.93
SH3D21-202ENST00000474766 WDR97A6NE52 1622 aa33.36■■■□□ 2.93
SH3D21-202ENST00000474766 ZEB1P37275 1124 aaPredicted RBP33.36■■■□□ 2.93
SH3D21-202ENST00000474766 AQRO60306 1485 aaKnown RBP eCLIP33.31■■■□□ 2.92
SH3D21-202ENST00000474766 TDRD9Q8NDG6 1382 aaKnown RBP33.28■■■□□ 2.92
SH3D21-202ENST00000474766 ABCA10Q8WWZ4 1543 aa33.26■■■□□ 2.91
SH3D21-202ENST00000474766 ABCA5Q8WWZ7 1642 aa33.16■■■□□ 2.9
SH3D21-202ENST00000474766 GAPVD1Q14C86 1478 aa33.1■■■□□ 2.89
SH3D21-202ENST00000474766 PBRM1Q86U86 1689 aa33.08■■■□□ 2.89
SH3D21-202ENST00000474766 GRIN2BQ13224 1484 aa33.05■■■□□ 2.88
SH3D21-202ENST00000474766 SNAPC4Q5SXM2 1469 aa33.01■■■□□ 2.88
SH3D21-202ENST00000474766 EHMT2Q96KQ7 1210 aa33.01■■■□□ 2.87
SH3D21-202ENST00000474766 CHD1O14646 1710 aa32.94■■■□□ 2.86
SH3D21-202ENST00000474766 MAGI1Q96QZ7 1491 aaPredicted RBP32.94■■■□□ 2.86
SH3D21-202ENST00000474766 DNAJC5Q9H3Z4 198 aa32.88■■■□□ 2.85
SH3D21-202ENST00000474766 ERICH3Q5RHP9 1530 aa32.86■■■□□ 2.85
SH3D21-202ENST00000474766 EEA1Q15075 1411 aa32.84■■■□□ 2.85
SH3D21-202ENST00000474766 KIF27Q86VH2 1401 aa32.84■■■□□ 2.85
SH3D21-202ENST00000474766 SYNJ2O15056 1496 aa32.82■■■□□ 2.84
SH3D21-202ENST00000474766 FBLN2P98095 1184 aa32.82■■■□□ 2.84
SH3D21-202ENST00000474766 ADAMTS12P58397 1594 aa32.81■■■□□ 2.84
SH3D21-202ENST00000474766 OSCARQ8IYS5 282 aa32.8■■■□□ 2.84
SH3D21-202ENST00000474766 RUSC2Q8N2Y8 1516 aa32.76■■■□□ 2.83
SH3D21-202ENST00000474766 SCAF1Q9H7N4 1312 aaKnown RBP32.74■■■□□ 2.83
SH3D21-202ENST00000474766 CHMP7Q8WUX9 453 aaPredicted RBP32.74■■■□□ 2.83
SH3D21-202ENST00000474766 FHAD1B1AJZ9 1412 aa32.7■■■□□ 2.83
SH3D21-202ENST00000474766 IGF1RP08069 1367 aa32.7■■■□□ 2.83
SH3D21-202ENST00000474766 CSRNP3Q8WYN3 585 aa32.66■■■□□ 2.82
SH3D21-202ENST00000474766 GRIN2AQ12879 1464 aa32.66■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms