RNA–Protein interactions for RNA: ENST00000338399.8

CDK5RAP3-201, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDK5RAP3, Length 1,866 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-201ENST00000338399 NISCHQ9Y2I1 1504 aa33.9■■■■□ 3.02
CDK5RAP3-201ENST00000338399 CCDC180Q9P1Z9 1646 aa29.66■■■□□ 2.34
CDK5RAP3-201ENST00000338399 ZCCHC6Q5VYS8 1495 aaKnown RBP28.43■■■□□ 2.14
CDK5RAP3-201ENST00000338399 ABCC9O60706 1549 aa28.27■■■□□ 2.12
CDK5RAP3-201ENST00000338399 DCAF8L2P0C7V8 631 aa28.12■■■□□ 2.09
CDK5RAP3-201ENST00000338399 DCAF1Q9Y4B6 1507 aa28■■■□□ 2.07
CDK5RAP3-201ENST00000338399 MYO15BQ96JP2 1530 aa27.74■■■□□ 2.03
CDK5RAP3-201ENST00000338399 NACADO15069 1562 aa27.67■■■□□ 2.02
CDK5RAP3-201ENST00000338399 SHROOM4Q9ULL8 1493 aa27.54■■■□□ 2
CDK5RAP3-201ENST00000338399 RB1CC1Q8TDY2 1594 aa27.5■■□□□ 1.99
CDK5RAP3-201ENST00000338399 SCRIBQ14160 1630 aa27.27■■□□□ 1.96
CDK5RAP3-201ENST00000338399 UNC13AQ9UPW8 1703 aa26.98■■□□□ 1.91
CDK5RAP3-201ENST00000338399 BICRAQ9NZM4 1560 aa26.68■■□□□ 1.86
CDK5RAP3-201ENST00000338399 PABPN1Q86U42 306 aaKnown RBP eCLIP26.62■■□□□ 1.852e-10■■□□□ 14.3
CDK5RAP3-201ENST00000338399 SUPT5HO00267 1087 aaKnown RBP26.39■■□□□ 1.82
CDK5RAP3-201ENST00000338399 CECR2Q9BXF3 1484 aa26.37■■□□□ 1.81
CDK5RAP3-201ENST00000338399 RSF1Q96T23 1441 aaPredicted RBP26.21■■□□□ 1.79
CDK5RAP3-201ENST00000338399 MROH2BQ7Z745 1585 aa26.19■■□□□ 1.78
CDK5RAP3-201ENST00000338399 BAZ1AQ9NRL2 1556 aaPredicted RBP26.19■■□□□ 1.78
CDK5RAP3-201ENST00000338399 SMARCA4P51532 1647 aa26.11■■□□□ 1.77
CDK5RAP3-201ENST00000338399 WIZO95785 1651 aa25.99■■□□□ 1.75
CDK5RAP3-201ENST00000338399 EIF4G1Q04637 1599 aaKnown RBP25.89■■□□□ 1.73
CDK5RAP3-201ENST00000338399 PEG3Q9GZU2 1588 aa25.78■■□□□ 1.72
CDK5RAP3-201ENST00000338399 ATAD2BQ9ULI0 1458 aa25.73■■□□□ 1.71
CDK5RAP3-201ENST00000338399 SMARCA2P51531 1590 aa25.71■■□□□ 1.71
CDK5RAP3-201ENST00000338399 TOP2AP11388 1531 aaKnown RBP25.68■■□□□ 1.7
CDK5RAP3-201ENST00000338399 CC2D2AQ9P2K1 1620 aa25.58■■□□□ 1.69
CDK5RAP3-201ENST00000338399 BAZ1BQ9UIG0 1483 aaKnown RBP25.58■■□□□ 1.68
CDK5RAP3-201ENST00000338399 NCAPD3P42695 1498 aa25.53■■□□□ 1.68
CDK5RAP3-201ENST00000338399 HMGXB3Q12766 1538 aa25.48■■□□□ 1.67
CDK5RAP3-201ENST00000338399 CCDC88BA6NC98 1476 aa25.43■■□□□ 1.66
CDK5RAP3-201ENST00000338399 CHIC1Q5VXU3 224 aa25.13■■□□□ 1.61
CDK5RAP3-201ENST00000338399 DNAJC5BQ9UF47 199 aa25.13■■□□□ 1.61
CDK5RAP3-201ENST00000338399 CFTRP13569 1480 aa24.91■■□□□ 1.58
CDK5RAP3-201ENST00000338399 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
CDK5RAP3-201ENST00000338399 ABCC8Q09428 1581 aa24.84■■□□□ 1.57
CDK5RAP3-201ENST00000338399 PRDM2Q13029 1718 aa24.81■■□□□ 1.56
CDK5RAP3-201ENST00000338399 TRIM41Q8WV44 630 aa24.81■■□□□ 1.56
CDK5RAP3-201ENST00000338399 NESP48681 1621 aa24.75■■□□□ 1.55
CDK5RAP3-201ENST00000338399 LAMC3Q9Y6N6 1575 aa24.72■■□□□ 1.55
CDK5RAP3-201ENST00000338399 WRNQ14191 1432 aaPredicted RBP eCLIP24.68■■□□□ 1.54
CDK5RAP3-201ENST00000338399 FANCD2Q9BXW9 1451 aa24.61■■□□□ 1.53
CDK5RAP3-201ENST00000338399 SYNJ1O43426 1573 aa24.6■■□□□ 1.53
CDK5RAP3-201ENST00000338399 PDS5BQ9NTI5 1447 aa24.53■■□□□ 1.52
CDK5RAP3-201ENST00000338399 TOP2BQ02880 1626 aa24.51■■□□□ 1.51
CDK5RAP3-201ENST00000338399 CUX1P39880 1505 aa24.5■■□□□ 1.51
CDK5RAP3-201ENST00000338399 BIVM-ERCC5R4GMW8 1640 aa24.49■■□□□ 1.51
CDK5RAP3-201ENST00000338399 CEP164Q9UPV0 1460 aa24.47■■□□□ 1.51
CDK5RAP3-201ENST00000338399 KIF21AQ7Z4S6 1674 aa24.47■■□□□ 1.51
CDK5RAP3-201ENST00000338399 FAM9AQ8IZU1 332 aaPredicted RBP24.38■■□□□ 1.49
CDK5RAP3-201ENST00000338399 DNMBPQ6XZF7 1577 aa24.35■■□□□ 1.49
CDK5RAP3-201ENST00000338399 TOPBP1Q92547 1522 aa24.32■■□□□ 1.48
CDK5RAP3-201ENST00000338399 URB2Q14146 1524 aaKnown RBP24.32■■□□□ 1.48
CDK5RAP3-201ENST00000338399 SOGA1O94964 1423 aa24.31■■□□□ 1.48
CDK5RAP3-201ENST00000338399 FGD5Q6ZNL6 1462 aa24.27■■□□□ 1.48
CDK5RAP3-201ENST00000338399 RUSC2Q8N2Y8 1516 aa24.25■■□□□ 1.47
CDK5RAP3-201ENST00000338399 ERCC6Q03468 1493 aa24.25■■□□□ 1.47
CDK5RAP3-201ENST00000338399 MRC2Q9UBG0 1479 aa24.22■■□□□ 1.47
CDK5RAP3-201ENST00000338399 EEA1Q15075 1411 aa24.19■■□□□ 1.46
CDK5RAP3-201ENST00000338399 POLA1P09884 1462 aaPredicted RBP24.18■■□□□ 1.46
CDK5RAP3-201ENST00000338399 LOC105371045A0A1W2PR82 267 aa24.18■■□□□ 1.46
CDK5RAP3-201ENST00000338399 RAD54L2Q9Y4B4 1467 aa24.12■■□□□ 1.45
CDK5RAP3-201ENST00000338399 CSRNP3Q8WYN3 585 aa24.11■■□□□ 1.45
CDK5RAP3-201ENST00000338399 WDR62O43379 1518 aa24.11■■□□□ 1.45
CDK5RAP3-201ENST00000338399 THOC2Q8NI27 1593 aaKnown RBP24.09■■□□□ 1.45
CDK5RAP3-201ENST00000338399 CUX2O14529 1486 aa24.08■■□□□ 1.44
CDK5RAP3-201ENST00000338399 KIF27Q86VH2 1401 aa24.07■■□□□ 1.44
CDK5RAP3-201ENST00000338399 EHMT2Q96KQ7 1210 aa24.07■■□□□ 1.44
CDK5RAP3-201ENST00000338399 ABCA10Q8WWZ4 1543 aa24.04■■□□□ 1.44
CDK5RAP3-201ENST00000338399 WDR97A6NE52 1622 aa24■■□□□ 1.43
CDK5RAP3-201ENST00000338399 TARBP1Q13395 1621 aaKnown RBP23.97■■□□□ 1.43
CDK5RAP3-201ENST00000338399 KIF21BO75037 1637 aa23.91■■□□□ 1.42
CDK5RAP3-201ENST00000338399 TDRD9Q8NDG6 1382 aaKnown RBP23.9■■□□□ 1.42
CDK5RAP3-201ENST00000338399 IFT140Q96RY7 1462 aa23.89■■□□□ 1.42
CDK5RAP3-201ENST00000338399 IGF1RP08069 1367 aa23.89■■□□□ 1.42
CDK5RAP3-201ENST00000338399 ABCA5Q8WWZ7 1642 aa23.87■■□□□ 1.41
CDK5RAP3-201ENST00000338399 GOLGA3Q08378 1498 aa23.87■■□□□ 1.41
CDK5RAP3-201ENST00000338399 PRXQ9BXM0 1461 aa23.85■■□□□ 1.41
CDK5RAP3-201ENST00000338399 GAPVD1Q14C86 1478 aa23.84■■□□□ 1.41
CDK5RAP3-201ENST00000338399 RAPGEF2Q9Y4G8 1499 aa23.83■■□□□ 1.41
CDK5RAP3-201ENST00000338399 UBTFP17480 764 aaKnown RBP23.81■■□□□ 1.4
CDK5RAP3-201ENST00000338399 ZNF608Q9ULD9 1512 aaPredicted RBP23.79■■□□□ 1.4
CDK5RAP3-201ENST00000338399 AQRO60306 1485 aaKnown RBP eCLIP23.79■■□□□ 1.41e-7■■■■□ 24.7
CDK5RAP3-201ENST00000338399 ERICH3Q5RHP9 1530 aa23.78■■□□□ 1.4
CDK5RAP3-201ENST00000338399 CARMIL1Q5VZK9 1371 aa23.77■■□□□ 1.39
CDK5RAP3-201ENST00000338399 TNIKQ9UKE5 1360 aa23.75■■□□□ 1.39
CDK5RAP3-201ENST00000338399 PBRM1Q86U86 1689 aa23.74■■□□□ 1.39
CDK5RAP3-201ENST00000338399 CUL7Q14999 1698 aa23.73■■□□□ 1.39
CDK5RAP3-201ENST00000338399 EIF4G3O43432 1585 aaKnown RBP23.7■■□□□ 1.39
CDK5RAP3-201ENST00000338399 GRIN2BQ13224 1484 aa23.68■■□□□ 1.38
CDK5RAP3-201ENST00000338399 CEP162Q5TB80 1403 aa23.61■■□□□ 1.37
CDK5RAP3-201ENST00000338399 ADAMTS12P58397 1594 aa23.58■■□□□ 1.36
CDK5RAP3-201ENST00000338399 FHAD1B1AJZ9 1412 aa23.56■■□□□ 1.36
CDK5RAP3-201ENST00000338399 SNAPC4Q5SXM2 1469 aa23.55■■□□□ 1.36
CDK5RAP3-201ENST00000338399 RANGAP1P46060 587 aaPredicted RBP23.51■■□□□ 1.35
CDK5RAP3-201ENST00000338399 MAGI1Q96QZ7 1491 aaPredicted RBP23.49■■□□□ 1.35
CDK5RAP3-201ENST00000338399 CLIP1P30622 1438 aa23.48■■□□□ 1.35
CDK5RAP3-201ENST00000338399 CTTNBP2Q8WZ74 1663 aa23.46■■□□□ 1.35
CDK5RAP3-201ENST00000338399 SYNJ2O15056 1496 aa23.41■■□□□ 1.34
CDK5RAP3-201ENST00000338399 CHMP7Q8WUX9 453 aaPredicted RBP23.39■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms