RNA–Protein interactions for RNA: ENST00000585163.5

CDK5RAP3-237, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,519 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-237ENST00000585163 NISCHQ9Y2I1 1504 aa29.3■■■□□ 2.28
CDK5RAP3-237ENST00000585163 CCDC180Q9P1Z9 1646 aa24.91■■□□□ 1.58
CDK5RAP3-237ENST00000585163 SHROOM4Q9ULL8 1493 aa24.9■■□□□ 1.58
CDK5RAP3-237ENST00000585163 ZCCHC6Q5VYS8 1495 aaKnown RBP24.82■■□□□ 1.56
CDK5RAP3-237ENST00000585163 SUPT5HO00267 1087 aaKnown RBP24.49■■□□□ 1.51
CDK5RAP3-237ENST00000585163 DCAF1Q9Y4B6 1507 aa24.11■■□□□ 1.45
CDK5RAP3-237ENST00000585163 DCAF8L2P0C7V8 631 aa24.09■■□□□ 1.45
CDK5RAP3-237ENST00000585163 CHIC1Q5VXU3 224 aa23.93■■□□□ 1.42
CDK5RAP3-237ENST00000585163 MYO15BQ96JP2 1530 aa23.85■■□□□ 1.41
CDK5RAP3-237ENST00000585163 ABCC9O60706 1549 aa23.43■■□□□ 1.34
CDK5RAP3-237ENST00000585163 HRCP23327 699 aa23.38■■□□□ 1.33
CDK5RAP3-237ENST00000585163 SCRIBQ14160 1630 aa23.26■■□□□ 1.31
CDK5RAP3-237ENST00000585163 PCGF6Q9BYE7 350 aa23.24■■□□□ 1.31
CDK5RAP3-237ENST00000585163 RSF1Q96T23 1441 aaPredicted RBP23.21■■□□□ 1.31
CDK5RAP3-237ENST00000585163 LOC105371045A0A1W2PR82 267 aa23.17■■□□□ 1.3
CDK5RAP3-237ENST00000585163 RB1CC1Q8TDY2 1594 aa23■■□□□ 1.27
CDK5RAP3-237ENST00000585163 NACADO15069 1562 aa22.99■■□□□ 1.27
CDK5RAP3-237ENST00000585163 TRIM41Q8WV44 630 aa22.85■■□□□ 1.25
CDK5RAP3-237ENST00000585163 TRIM26Q12899 539 aaPredicted RBP22.85■■□□□ 1.25
CDK5RAP3-237ENST00000585163 CECR2Q9BXF3 1484 aa22.8■■□□□ 1.24
CDK5RAP3-237ENST00000585163 PPARGC1BQ86YN6 1023 aaKnown RBP22.78■■□□□ 1.24
CDK5RAP3-237ENST00000585163 MROH2BQ7Z745 1585 aa22.75■■□□□ 1.23
CDK5RAP3-237ENST00000585163 WIZO95785 1651 aa22.63■■□□□ 1.21
CDK5RAP3-237ENST00000585163 FAM9AQ8IZU1 332 aaPredicted RBP22.59■■□□□ 1.21
CDK5RAP3-237ENST00000585163 BAZ1AQ9NRL2 1556 aaPredicted RBP22.55■■□□□ 1.2
CDK5RAP3-237ENST00000585163 EIF4G1Q04637 1599 aaKnown RBP22.43■■□□□ 1.18
CDK5RAP3-237ENST00000585163 ZEB1P37275 1124 aaPredicted RBP22.42■■□□□ 1.18
CDK5RAP3-237ENST00000585163 EHMT2Q96KQ7 1210 aa22.32■■□□□ 1.16
CDK5RAP3-237ENST00000585163 TOP2AP11388 1531 aaKnown RBP22.32■■□□□ 1.16
CDK5RAP3-237ENST00000585163 SMARCA4P51532 1647 aa22.29■■□□□ 1.16
CDK5RAP3-237ENST00000585163 UNC13AQ9UPW8 1703 aa22.24■■□□□ 1.15
CDK5RAP3-237ENST00000585163 CCDC88BA6NC98 1476 aa22.2■■□□□ 1.14
CDK5RAP3-237ENST00000585163 SMARCA2P51531 1590 aa22.19■■□□□ 1.14
CDK5RAP3-237ENST00000585163 ABCC8Q09428 1581 aa22.14■■□□□ 1.13
CDK5RAP3-237ENST00000585163 WRNQ14191 1432 aaPredicted RBP eCLIP21.99■■□□□ 1.11
CDK5RAP3-237ENST00000585163 SOGA1O94964 1423 aa21.96■■□□□ 1.11
CDK5RAP3-237ENST00000585163 BICRAQ9NZM4 1560 aa21.95■■□□□ 1.1
CDK5RAP3-237ENST00000585163 EEA1Q15075 1411 aa21.95■■□□□ 1.1
CDK5RAP3-237ENST00000585163 CEP162Q5TB80 1403 aa21.93■■□□□ 1.1
CDK5RAP3-237ENST00000585163 TNIKQ9UKE5 1360 aa21.92■■□□□ 1.1
CDK5RAP3-237ENST00000585163 PEG3Q9GZU2 1588 aa21.91■■□□□ 1.1
CDK5RAP3-237ENST00000585163 CSRNP3Q8WYN3 585 aa21.86■■□□□ 1.09
CDK5RAP3-237ENST00000585163 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.84■■□□□ 1.09
CDK5RAP3-237ENST00000585163 PABPN1Q86U42 306 aaKnown RBP eCLIP21.84■■□□□ 1.092e-10■■□□□ 14.3
CDK5RAP3-237ENST00000585163 RUSC2Q8N2Y8 1516 aa21.83■■□□□ 1.09
CDK5RAP3-237ENST00000585163 CCER1Q8TC90 406 aaPredicted RBP21.81■■□□□ 1.08
CDK5RAP3-237ENST00000585163 PELP1Q8IZL8 1130 aaKnown RBP21.79■■□□□ 1.08
CDK5RAP3-237ENST00000585163 GOLGA3Q08378 1498 aa21.76■■□□□ 1.07
CDK5RAP3-237ENST00000585163 UBTFP17480 764 aaKnown RBP21.73■■□□□ 1.07
CDK5RAP3-237ENST00000585163 SYNJ1O43426 1573 aa21.68■■□□□ 1.06
CDK5RAP3-237ENST00000585163 ATAD2BQ9ULI0 1458 aa21.68■■□□□ 1.06
CDK5RAP3-237ENST00000585163 TTBK1Q5TCY1 1321 aaPredicted RBP21.65■■□□□ 1.06
CDK5RAP3-237ENST00000585163 CEP164Q9UPV0 1460 aa21.64■■□□□ 1.05
CDK5RAP3-237ENST00000585163 KIF21BO75037 1637 aa21.64■■□□□ 1.05
CDK5RAP3-237ENST00000585163 BAZ1BQ9UIG0 1483 aaKnown RBP21.62■■□□□ 1.05
CDK5RAP3-237ENST00000585163 SCAF1Q9H7N4 1312 aaKnown RBP21.56■■□□□ 1.04
CDK5RAP3-237ENST00000585163 MYT1Q01538 1121 aa21.5■■□□□ 1.03
CDK5RAP3-237ENST00000585163 CLIP1P30622 1438 aa21.5■■□□□ 1.03
CDK5RAP3-237ENST00000585163 DIEXFQ68CQ4 756 aaKnown RBP21.46■■□□□ 1.03
CDK5RAP3-237ENST00000585163 VPS8Q8N3P4 1428 aa21.44■■□□□ 1.02
CDK5RAP3-237ENST00000585163 TOP2BQ02880 1626 aa21.44■■□□□ 1.02
CDK5RAP3-237ENST00000585163 RAPGEF2Q9Y4G8 1499 aa21.43■■□□□ 1.02
CDK5RAP3-237ENST00000585163 BIVM-ERCC5R4GMW8 1640 aa21.37■■□□□ 1.01
CDK5RAP3-237ENST00000585163 ACIN1Q9UKV3 1341 aaKnown RBP21.36■■□□□ 1.01
CDK5RAP3-237ENST00000585163 ZNF316A6NFI3 1004 aaPredicted RBP21.29■■□□□ 1
CDK5RAP3-237ENST00000585163 NEUROD1Q13562 356 aa21.29■■□□□ 1
CDK5RAP3-237ENST00000585163 APLP2Q06481 763 aa21.29■■□□□ 1
CDK5RAP3-237ENST00000585163 HMGXB3Q12766 1538 aa21.29■■□□□ 1
CDK5RAP3-237ENST00000585163 HNRNPUL2Q1KMD3 747 aaKnown RBP21.28■■□□□ 1
CDK5RAP3-237ENST00000585163 ERICH3Q5RHP9 1530 aa21.28■■□□□ 1
CDK5RAP3-237ENST00000585163 NCAPD3P42695 1498 aa21.27■■□□□ 1
CDK5RAP3-237ENST00000585163 PRXQ9BXM0 1461 aa21.26■□□□□ 0.99
CDK5RAP3-237ENST00000585163 CENPBP07199 599 aaPredicted RBP21.23■□□□□ 0.99
CDK5RAP3-237ENST00000585163 CUX1P39880 1505 aa21.18■□□□□ 0.98
CDK5RAP3-237ENST00000585163 RANGAP1P46060 587 aaPredicted RBP21.18■□□□□ 0.98
CDK5RAP3-237ENST00000585163 ARAP1Q96P48 1450 aa21.15■□□□□ 0.98
CDK5RAP3-237ENST00000585163 CFTRP13569 1480 aa21.12■□□□□ 0.97
CDK5RAP3-237ENST00000585163 KIF27Q86VH2 1401 aa21.12■□□□□ 0.97
CDK5RAP3-237ENST00000585163 GTF3C3Q9Y5Q9 886 aa21.08■□□□□ 0.97
CDK5RAP3-237ENST00000585163 CLSPNQ9HAW4 1339 aa21.03■□□□□ 0.96
CDK5RAP3-237ENST00000585163 KANK4Q5T7N3 995 aaPredicted RBP21.01■□□□□ 0.95
CDK5RAP3-237ENST00000585163 PRDM2Q13029 1718 aa20.98■□□□□ 0.95
CDK5RAP3-237ENST00000585163 RRBP1Q9P2E9 1410 aaKnown RBP20.98■□□□□ 0.95
CDK5RAP3-237ENST00000585163 DHX57Q6P158 1386 aaKnown RBP20.97■□□□□ 0.95
CDK5RAP3-237ENST00000585163 MIER1Q8N108 512 aa20.97■□□□□ 0.95
CDK5RAP3-237ENST00000585163 ARHGAP35Q9NRY4 1499 aa20.96■□□□□ 0.95
CDK5RAP3-237ENST00000585163 CUX2O14529 1486 aa20.89■□□□□ 0.93
CDK5RAP3-237ENST00000585163 YTHDC1Q96MU7 727 aaKnown RBP20.87■□□□□ 0.93
CDK5RAP3-237ENST00000585163 IGF1RP08069 1367 aa20.87■□□□□ 0.93
CDK5RAP3-237ENST00000585163 CCNB3Q8WWL7 1395 aa20.85■□□□□ 0.93
CDK5RAP3-237ENST00000585163 CADPSQ9ULU8 1353 aa20.85■□□□□ 0.93
CDK5RAP3-237ENST00000585163 MAP3K1Q13233 1512 aa20.8■□□□□ 0.92
CDK5RAP3-237ENST00000585163 FGD5Q6ZNL6 1462 aa20.78■□□□□ 0.92
CDK5RAP3-237ENST00000585163 CARMIL1Q5VZK9 1371 aa20.77■□□□□ 0.92
CDK5RAP3-237ENST00000585163 TIAM1Q13009 1591 aa20.76■□□□□ 0.91
CDK5RAP3-237ENST00000585163 LRRC9Q6ZRR7 1453 aa20.68■□□□□ 0.9
CDK5RAP3-237ENST00000585163 RAB3GAP2Q9H2M9 1393 aa20.66■□□□□ 0.9
CDK5RAP3-237ENST00000585163 ITGAEP38570 1179 aa20.66■□□□□ 0.9
CDK5RAP3-237ENST00000585163 FHAD1B1AJZ9 1412 aa20.65■□□□□ 0.9
CDK5RAP3-237ENST00000585163 FANCD2Q9BXW9 1451 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms