RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 DCAF8L2P0C7V8 631 aa18.76■□□□□ 0.59
SMARCA1-205ENST00000617310 NISCHQ9Y2I1 1504 aa18.01■□□□□ 0.47
SMARCA1-205ENST00000617310 SUPT5HO00267 1087 aaKnown RBP17.48■□□□□ 0.39
SMARCA1-205ENST00000617310 SHROOM4Q9ULL8 1493 aa17.42■□□□□ 0.38
SMARCA1-205ENST00000617310 EHMT2Q96KQ7 1210 aa17■□□□□ 0.31
SMARCA1-205ENST00000617310 FAM9AQ8IZU1 332 aaPredicted RBP16.53■□□□□ 0.24
SMARCA1-205ENST00000617310 RANGAP1P46060 587 aaPredicted RBP16.3■□□□□ 0.2
SMARCA1-205ENST00000617310 TTBK1Q5TCY1 1321 aaPredicted RBP16.3■□□□□ 0.2
SMARCA1-205ENST00000617310 APLP2Q06481 763 aa16.12■□□□□ 0.17
SMARCA1-205ENST00000617310 TRIM41Q8WV44 630 aa16.06■□□□□ 0.16
SMARCA1-205ENST00000617310 ATP1B4Q9UN42 357 aaPredicted RBP16■□□□□ 0.15
SMARCA1-205ENST00000617310 ABCC9O60706 1549 aa15.97■□□□□ 0.15
SMARCA1-205ENST00000617310 PABPN1Q86U42 306 aaKnown RBP eCLIP15.91■□□□□ 0.14
SMARCA1-205ENST00000617310 UBTFP17480 764 aaKnown RBP15.89■□□□□ 0.13
SMARCA1-205ENST00000617310 CCDC180Q9P1Z9 1646 aa15.81■□□□□ 0.12
SMARCA1-205ENST00000617310 PCGF6Q9BYE7 350 aa15.81■□□□□ 0.12
SMARCA1-205ENST00000617310 PPARGC1BQ86YN6 1023 aaKnown RBP15.74■□□□□ 0.11
SMARCA1-205ENST00000617310 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.51■□□□□ 0.07
SMARCA1-205ENST00000617310 HNRNPUL2Q1KMD3 747 aaKnown RBP15.51■□□□□ 0.07
SMARCA1-205ENST00000617310 LOC105371045A0A1W2PR82 267 aa15.51■□□□□ 0.07
SMARCA1-205ENST00000617310 CCER1Q8TC90 406 aaPredicted RBP15.46■□□□□ 0.07
SMARCA1-205ENST00000617310 ITGAEP38570 1179 aa15.43■□□□□ 0.06
SMARCA1-205ENST00000617310 CHIC1Q5VXU3 224 aa15.42■□□□□ 0.06
SMARCA1-205ENST00000617310 MYT1LQ9UL68 1186 aa15.38■□□□□ 0.05
SMARCA1-205ENST00000617310 FBLN2P98095 1184 aa15.24■□□□□ 0.03
SMARCA1-205ENST00000617310 ARID3CA6NKF2 412 aa15.07■□□□□ 0
SMARCA1-205ENST00000617310 POLR3GLQ9BT43 218 aa15.07■□□□□ 0
SMARCA1-205ENST00000617310 CNGB1Q14028 1251 aaPredicted RBP15.06■□□□□ 0
SMARCA1-205ENST00000617310 ZCCHC6Q5VYS8 1495 aaKnown RBP15.05■□□□□ -0
SMARCA1-205ENST00000617310 SCRIBQ14160 1630 aa15.04■□□□□ -0
SMARCA1-205ENST00000617310 TRIM26Q12899 539 aaPredicted RBP15.03■□□□□ -0
SMARCA1-205ENST00000617310 P3H3Q8IVL6 736 aa15.01□□□□□ -0.01
SMARCA1-205ENST00000617310 ZEB1P37275 1124 aaPredicted RBP15□□□□□ -0.01
SMARCA1-205ENST00000617310 YTHDC1Q96MU7 727 aaKnown RBP15□□□□□ -0.01
SMARCA1-205ENST00000617310 DCAF1Q9Y4B6 1507 aa14.99□□□□□ -0.01
SMARCA1-205ENST00000617310 FAM50AQ14320 339 aaKnown RBP14.97□□□□□ -0.01
SMARCA1-205ENST00000617310 PELP1Q8IZL8 1130 aaKnown RBP14.92□□□□□ -0.02
SMARCA1-205ENST00000617310 MYO15BQ96JP2 1530 aa14.83□□□□□ -0.03
SMARCA1-205ENST00000617310 TRIM52Q96A61 297 aa14.82□□□□□ -0.04
SMARCA1-205ENST00000617310 CENPBP07199 599 aaPredicted RBP14.8□□□□□ -0.04
SMARCA1-205ENST00000617310 CSRNP3Q8WYN3 585 aa14.8□□□□□ -0.04
SMARCA1-205ENST00000617310 SLC4A1APQ9BWU0 796 aaKnown RBP14.79□□□□□ -0.04
SMARCA1-205ENST00000617310 NEUROD1Q13562 356 aa14.73□□□□□ -0.05
SMARCA1-205ENST00000617310 HRCP23327 699 aa14.72□□□□□ -0.05
SMARCA1-205ENST00000617310 ZNF777Q9ULD5 760 aaPredicted RBP14.72□□□□□ -0.05
SMARCA1-205ENST00000617310 ZNF326Q5BKZ1 582 aaKnown RBP14.71□□□□□ -0.05
SMARCA1-205ENST00000617310 PLPPR3Q6T4P5 718 aa14.64□□□□□ -0.07
SMARCA1-205ENST00000617310 NEFLP07196 543 aa14.62□□□□□ -0.07
SMARCA1-205ENST00000617310 RB1CC1Q8TDY2 1594 aa14.55□□□□□ -0.08
SMARCA1-205ENST00000617310 CHMP7Q8WUX9 453 aaPredicted RBP14.53□□□□□ -0.08
SMARCA1-205ENST00000617310 BCANQ96GW7 911 aa14.52□□□□□ -0.09
SMARCA1-205ENST00000617310 NPM1P06748 294 aaKnown RBP eCLIP14.5□□□□□ -0.09
SMARCA1-205ENST00000617310 CDK11AQ9UQ88 783 aaPredicted RBP14.48□□□□□ -0.09
SMARCA1-205ENST00000617310 UNC13AQ9UPW8 1703 aa14.48□□□□□ -0.09
SMARCA1-205ENST00000617310 RSF1Q96T23 1441 aaPredicted RBP14.45□□□□□ -0.1
SMARCA1-205ENST00000617310 CHIC2Q9UKJ5 165 aa14.44□□□□□ -0.1
SMARCA1-205ENST00000617310 ERICH6Q7L0X2 663 aa14.44□□□□□ -0.1
SMARCA1-205ENST00000617310 NACADO15069 1562 aa14.42□□□□□ -0.1
SMARCA1-205ENST00000617310 CHGAP10645 457 aaKnown RBP14.42□□□□□ -0.1
SMARCA1-205ENST00000617310 ESF1Q9H501 851 aaKnown RBP14.39□□□□□ -0.11
SMARCA1-205ENST00000617310 DIEXFQ68CQ4 756 aaKnown RBP14.39□□□□□ -0.11
SMARCA1-205ENST00000617310 CECR2Q9BXF3 1484 aa14.38□□□□□ -0.11
SMARCA1-205ENST00000617310 KCNH8Q96L42 1107 aa14.38□□□□□ -0.11
SMARCA1-205ENST00000617310 SENP3Q9H4L4 574 aaPredicted RBP14.38□□□□□ -0.11
SMARCA1-205ENST00000617310 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.37□□□□□ -0.111e-9■■□□□ 11.5
SMARCA1-205ENST00000617310 BAZ1BQ9UIG0 1483 aaKnown RBP14.35□□□□□ -0.11
SMARCA1-205ENST00000617310 STAG3Q9UJ98 1225 aa14.3□□□□□ -0.12
SMARCA1-205ENST00000617310 SLC24A1O60721 1099 aa14.27□□□□□ -0.13
SMARCA1-205ENST00000617310 ERCC6Q03468 1493 aa14.27□□□□□ -0.13
SMARCA1-205ENST00000617310 MTUS2Q5JR59 1369 aa14.25□□□□□ -0.13
SMARCA1-205ENST00000617310 WRNQ14191 1432 aaPredicted RBP eCLIP14.24□□□□□ -0.13
SMARCA1-205ENST00000617310 TSPY4P0CV99 314 aa14.23□□□□□ -0.13
SMARCA1-205ENST00000617310 TSPY10P0CW01 314 aa14.23□□□□□ -0.13
SMARCA1-205ENST00000617310 BCL11AQ9H165 835 aa14.22□□□□□ -0.13
SMARCA1-205ENST00000617310 CLIP1P30622 1438 aa14.2□□□□□ -0.14
SMARCA1-205ENST00000617310 RRP7BPQ9NSQ0 103 aa14.19□□□□□ -0.14
SMARCA1-205ENST00000617310 ANP32CO43423 234 aa14.18□□□□□ -0.14
SMARCA1-205ENST00000617310 KDM2AQ9Y2K7 1162 aa14.17□□□□□ -0.14
SMARCA1-205ENST00000617310 PLEKHD1A6NEE1 506 aa14.16□□□□□ -0.14
SMARCA1-205ENST00000617310 PLEKHG5O94827 1062 aa14.14□□□□□ -0.15
SMARCA1-205ENST00000617310 CLSPNQ9HAW4 1339 aa14.13□□□□□ -0.15
SMARCA1-205ENST00000617310 BICRAQ9NZM4 1560 aa14.12□□□□□ -0.15
SMARCA1-205ENST00000617310 TONSLQ96HA7 1378 aa14.12□□□□□ -0.15
SMARCA1-205ENST00000617310 ZNF316A6NFI3 1004 aaPredicted RBP14.12□□□□□ -0.15
SMARCA1-205ENST00000617310 HIRIP3Q9BW71 556 aaPredicted RBP14.12□□□□□ -0.15
SMARCA1-205ENST00000617310 BAZ1AQ9NRL2 1556 aaPredicted RBP14.11□□□□□ -0.15
SMARCA1-205ENST00000617310 KIF27Q86VH2 1401 aa14.1□□□□□ -0.15
SMARCA1-205ENST00000617310 ARID4BQ4LE39 1312 aaPredicted RBP14.08□□□□□ -0.16
SMARCA1-205ENST00000617310 TRHP20396 242 aaPredicted RBP14.07□□□□□ -0.16
SMARCA1-205ENST00000617310 MROH2BQ7Z745 1585 aa14.07□□□□□ -0.16
SMARCA1-205ENST00000617310 DAXXQ9UER7 740 aaPredicted RBP14.07□□□□□ -0.16
SMARCA1-205ENST00000617310 RGL3Q3MIN7 710 aa14.06□□□□□ -0.16
SMARCA1-205ENST00000617310 CFDP1Q9UEE9 299 aaPredicted RBP14.05□□□□□ -0.16
SMARCA1-205ENST00000617310 TDRD9Q8NDG6 1382 aaKnown RBP14.05□□□□□ -0.16
SMARCA1-205ENST00000617310 DDX10Q13206 875 aaKnown RBP14.04□□□□□ -0.16
SMARCA1-205ENST00000617310 CEP162Q5TB80 1403 aa14.04□□□□□ -0.16
SMARCA1-205ENST00000617310 SALL2Q9Y467 1007 aaPredicted RBP14.04□□□□□ -0.16
SMARCA1-205ENST00000617310 CUX2O14529 1486 aa14.02□□□□□ -0.17
SMARCA1-205ENST00000617310 SOGA1O94964 1423 aa14.01□□□□□ -0.17
SMARCA1-205ENST00000617310 SCAF1Q9H7N4 1312 aaKnown RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms